Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99783 * 2 1 4 4 C 1.38572 * 120.02003 * 0.25563 * 3 2 1 5 5 C 1.39524 * 119.80083 * 180.25159 * 4 3 2 6 6 C 1.47951 * 120.08485 * 179.76933 * 5 4 3 7 7 C 1.39959 * 119.88435 * 179.72239 * 6 5 4 8 8 C 1.36237 * 120.12149 * 180.02562 * 7 6 5 9 9 C 1.40939 * 119.87734 * 359.97438 * 8 7 6 10 10 C 1.41003 * 120.11448 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99980 * 150.18166 * 10 9 8 12 12 C 1.39989 * 120.00216 * 329.90581 * 10 9 8 13 13 N 1.30809 * 120.00062 * 161.79147 * 12 10 9 14 14 Si 1.86798 * 119.99807 * 341.79427 * 12 10 9 15 15 H 1.48505 * 109.47022 * 95.40895 * 14 12 10 16 16 H 1.48499 * 109.47107 * 215.40319 * 14 12 10 17 17 H 1.48499 * 109.47072 * 335.40550 * 14 12 10 18 18 C 1.40938 * 119.76788 * 0.27320 * 9 8 7 19 19 C 1.36235 * 119.87837 * 359.46406 * 18 9 8 20 20 C 1.39683 * 119.83183 * 359.49678 * 5 4 3 21 21 C 1.37972 * 120.02418 * 0.25157 * 20 5 4 22 22 C 1.38446 * 120.20058 * 359.97438 * 21 20 5 23 23 F 1.35107 * 119.91063 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47447 * 59.99569 * 1 2 3 25 25 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47083 * 300.00389 * 1 2 3 27 27 H 1.07997 * 120.09398 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.94183 * 0.02562 * 7 6 5 29 29 H 1.07999 * 120.06254 * 179.97438 * 8 7 6 30 30 H 0.96999 * 119.99927 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.06033 * 179.70419 * 18 9 8 32 32 H 1.08007 * 119.93767 * 180.27433 * 19 18 9 33 33 H 1.08000 * 119.99403 * 180.27395 * 20 5 4 34 34 H 1.08006 * 119.89596 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1972 2.6623 0.0054 5 6 1.5161 4.0205 0.0000 6 6 0.4394 5.0352 0.0005 7 6 0.7642 6.3966 0.0010 8 6 -0.2234 7.3351 0.0020 9 6 -1.5742 6.9328 0.0020 10 6 -2.6004 7.8998 0.0025 11 1 -3.5500 7.6798 -0.4626 12 6 -2.3904 9.1430 0.6109 13 7 -3.1681 10.1536 0.3193 14 14 -0.9995 9.3587 1.8390 15 1 0.1941 9.9045 1.1442 16 1 -1.4236 10.2993 2.9070 17 1 -0.6633 8.0440 2.4420 18 6 -1.8957 5.5606 0.0068 19 6 -0.9003 4.6303 0.0003 20 6 2.8546 4.4200 -0.0001 21 6 3.8578 3.4727 -0.0001 22 6 3.5426 2.1246 0.0005 23 9 4.5296 1.2020 -0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.1638 2.3485 0.0099 28 1 1.7996 6.7038 0.0006 29 1 0.0282 8.3853 0.0028 30 1 -3.0223 11.0151 0.7405 31 1 -2.9291 5.2470 0.0116 32 1 -1.1456 3.5785 -0.0005 33 1 3.1045 5.4707 0.0003 34 1 4.8920 3.7839 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238960878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = -20.687942 kcal Electronic energy + Delta-G solvation = -19134.535533 eV Core-core repulsion = 16036.679336 eV Total energy + Delta-G solvation = -3097.856196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.86671 -40.52313 -38.97374 -35.70471 -33.37915 -32.77464 -31.55917 -30.45235 -29.73558 -26.73835 -24.70712 -23.81561 -22.54437 -21.88249 -19.51767 -19.08284 -18.08208 -17.50753 -17.35202 -16.65350 -16.42336 -15.83401 -15.56917 -15.23646 -14.98389 -14.63587 -14.61232 -14.46303 -14.18753 -14.05650 -14.01516 -13.46597 -13.39658 -12.96290 -12.72463 -12.58942 -12.27188 -12.03135 -11.79361 -11.42801 -11.30363 -11.02707 -10.86338 -10.22975 -9.65722 -8.99418 -8.97448 -8.42231 -6.50854 -0.23405 0.13243 0.46502 0.89056 0.93086 1.26469 1.38456 1.41749 1.48656 2.08597 2.37127 2.80885 3.22257 3.53721 3.71908 3.86183 4.11689 4.21040 4.23514 4.24082 4.27230 4.37501 4.64777 4.69401 4.82885 4.89746 4.92396 4.94624 5.02951 5.16734 5.25375 5.39539 5.57676 5.68133 5.86451 5.91141 6.03710 6.17108 6.32215 6.66005 6.75769 8.07722 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.003975 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.505166 B = 7042.328084 C = 7830.257794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.132 6.132 3 C -0.118 4.118 4 C -0.128 4.128 5 C 0.006 3.994 6 C -0.190 4.190 7 C -0.055 4.055 8 C -0.253 4.253 9 C 0.081 3.919 10 C -0.472 4.472 11 H 0.061 0.939 12 C 0.050 3.950 13 N -0.836 5.836 14 Si 0.965 3.035 15 H -0.254 1.254 16 H -0.277 1.277 17 H -0.252 1.252 18 C -0.223 4.223 19 C -0.058 4.058 20 C -0.116 4.116 21 C -0.117 4.117 22 C 0.065 3.935 23 F -0.142 7.142 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.091 0.909 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.297 0.703 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.107 -13.193 1.254 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.110 5.890 3 C -0.231 4.231 4 C -0.152 4.152 5 C 0.004 3.996 6 C -0.191 4.191 7 C -0.073 4.073 8 C -0.272 4.272 9 C 0.078 3.922 10 C -0.500 4.500 11 H 0.080 0.920 12 C -0.167 4.167 13 N -0.461 5.461 14 Si 0.788 3.212 15 H -0.179 1.179 16 H -0.204 1.204 17 H -0.176 1.176 18 C -0.243 4.243 19 C -0.076 4.076 20 C -0.136 4.136 21 C -0.137 4.137 22 C 0.040 3.960 23 F -0.121 7.121 24 H 0.110 0.890 25 H 0.150 0.850 26 H 0.110 0.890 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.620 -14.029 1.249 17.639 hybrid contribution -0.813 1.541 0.243 1.759 sum 9.807 -12.487 1.492 15.948 Atomic orbital electron populations 1.23833 0.91622 1.08795 1.06578 1.85513 1.09823 1.01129 1.92553 1.21790 0.94905 0.98676 1.07741 1.21203 0.98626 0.91617 1.03705 1.18882 0.93136 0.92003 0.95558 1.18337 0.92098 0.91989 1.16717 1.20805 0.98724 0.92138 0.95624 1.20845 0.93257 0.98454 1.14621 1.17990 0.92485 0.93221 0.88517 1.19577 1.00584 0.97288 1.32580 0.92044 1.26902 0.98618 0.93819 0.97367 1.69704 1.37557 1.02447 1.36377 0.85488 0.78141 0.79574 0.78036 1.17858 1.20352 1.17602 1.20907 0.98602 0.92572 1.12188 1.20776 0.91873 0.98745 0.96215 1.21353 0.90875 1.00663 1.00757 1.21169 1.01853 0.89614 1.01028 1.17341 0.83213 0.86979 1.08440 1.91456 1.60499 1.65794 1.94303 0.88994 0.84965 0.89002 0.83823 0.85073 0.88111 0.89192 0.87528 0.85477 0.83239 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.15 113.37 1.04 -1.22 16 2 S -0.13 -3.11 22.16 -56.49 -1.25 -4.37 16 3 C -0.12 -3.27 6.11 22.61 0.14 -3.13 16 4 C -0.13 -3.61 8.74 22.66 0.20 -3.41 16 5 C 0.01 0.19 5.88 -20.04 -0.12 0.07 16 6 C -0.19 -6.89 5.90 -19.87 -0.12 -7.01 16 7 C -0.06 -2.09 9.36 22.22 0.21 -1.88 16 8 C -0.25 -11.17 7.11 22.47 0.16 -11.01 16 9 C 0.08 3.89 5.10 -21.28 -0.11 3.78 16 10 C -0.47 -25.15 9.55 23.37 0.22 -24.93 16 11 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 12 C 0.05 2.53 5.40 85.27 0.46 2.99 16 13 N -0.84 -43.63 13.93 21.83 0.30 -43.33 16 14 Si 0.96 40.40 24.52 68.60 1.68 42.09 16 15 H -0.25 -9.92 6.71 99.48 0.67 -9.26 16 16 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.25 -10.85 6.87 99.48 0.68 -10.17 16 18 C -0.22 -9.62 9.73 22.46 0.22 -9.40 16 19 C -0.06 -2.15 9.36 22.22 0.21 -1.94 16 20 C -0.12 -3.10 9.42 22.56 0.21 -2.89 16 21 C -0.12 -2.86 10.00 22.26 0.22 -2.63 16 22 C 0.07 1.81 7.28 22.58 0.16 1.98 16 23 F -0.14 -4.02 16.75 44.97 0.75 -3.27 16 24 H 0.09 1.43 7.76 -2.39 -0.02 1.41 16 25 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.43 7.73 -2.39 -0.02 1.41 16 27 H 0.14 3.58 3.99 -2.91 -0.01 3.57 16 28 H 0.13 4.05 6.17 -2.91 -0.02 4.04 16 29 H 0.10 4.43 4.75 -2.91 -0.01 4.42 16 30 H 0.30 13.85 8.30 -92.71 -0.77 13.09 16 31 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.13 3.80 6.17 -2.91 -0.02 3.78 16 33 H 0.15 3.44 6.17 -2.91 -0.02 3.42 16 34 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -57.43 299.45 5.68 -51.75 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.08 Total: 17.77 kcal Atomic # 6 Polarization: -63.74 SS G_CDS: 3.11 Total: -60.64 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.30 Total: -43.33 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.75 Total: -3.27 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.68 Total: 42.09 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.25 Total: -4.37 kcal Total: -57.43 5.68 -51.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238960878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.062 kcal (2) G-P(sol) polarization free energy of solvation -57.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds