Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76193 * 103.00064 * 2 1 4 4 C 1.38563 * 120.01391 * 359.72886 * 3 2 1 5 5 C 1.39577 * 119.79486 * 179.70138 * 4 3 2 6 6 C 1.47832 * 120.08888 * 180.31820 * 5 4 3 7 7 C 1.39192 * 120.33966 * 310.24821 * 6 5 4 8 8 C 1.38063 * 119.98308 * 179.97438 * 7 6 5 9 9 C 1.38940 * 120.67779 * 0.02562 * 8 7 6 10 10 C 1.36419 * 120.69020 * 0.02562 * 9 8 7 11 11 C 1.40755 * 119.99116 * 359.70238 * 10 9 8 12 12 C 1.40867 * 120.33242 * 180.27802 * 11 10 9 13 13 H 1.07995 * 119.99537 * 153.71397 * 12 11 10 14 14 C 1.40045 * 120.00104 * 333.70959 * 12 11 10 15 15 N 1.30794 * 119.99834 * 342.99329 * 14 12 11 16 16 Si 1.86795 * 120.00219 * 162.99057 * 14 12 11 17 17 H 1.48499 * 109.47055 * 60.00265 * 16 14 12 18 18 H 1.48501 * 109.47503 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47345 * 300.00138 * 16 14 12 20 20 C 1.39732 * 119.82206 * 0.56686 * 5 4 3 21 21 C 1.37959 * 120.01602 * 359.70951 * 20 5 4 22 22 C 1.38453 * 120.20946 * 0.02562 * 21 20 5 23 23 F 1.35096 * 119.90681 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47522 * 59.99877 * 1 2 3 25 25 H 1.08998 * 109.47074 * 299.99725 * 1 2 3 26 26 H 1.09002 * 109.47602 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.10001 * 359.97438 * 4 3 2 28 28 H 1.08001 * 120.00450 * 0.02562 * 7 6 5 29 29 H 1.08003 * 119.65568 * 179.97438 * 8 7 6 30 30 H 1.07996 * 119.64905 * 180.02562 * 9 8 7 31 31 H 1.08005 * 120.00145 * 179.97438 * 10 9 8 32 32 H 0.97002 * 119.99956 * 180.02562 * 15 14 12 33 33 H 1.07990 * 119.98996 * 179.72737 * 20 5 4 34 34 H 1.08004 * 119.89068 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1972 2.6620 -0.0057 5 6 1.5164 4.0208 0.0007 6 6 0.4406 5.0348 0.0018 7 6 -0.6009 4.9559 -0.9183 8 6 -1.6020 5.9066 -0.9104 9 6 -1.5835 6.9479 0.0093 10 6 -0.5755 7.0524 0.9226 11 6 0.4567 6.0957 0.9438 12 6 1.4979 6.1933 1.8876 13 1 2.0278 5.3059 2.2007 14 6 1.8460 7.4411 2.4197 15 7 1.4577 8.5381 1.8224 16 14 2.8646 7.5389 3.9824 17 1 4.1699 6.8648 3.7654 18 1 3.0950 8.9630 4.3349 19 1 2.1384 6.8667 5.0896 20 6 2.8554 4.4201 0.0007 21 6 3.8581 3.4726 0.0005 22 6 3.5427 2.1244 -0.0002 23 9 4.5295 1.2018 0.0002 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.1638 2.3483 -0.0105 28 1 -0.6262 4.1508 -1.6377 29 1 -2.4074 5.8406 -1.6269 30 1 -2.3753 7.6823 0.0009 31 1 -0.5719 7.8667 1.6322 32 1 1.6991 9.4024 2.1908 33 1 3.1054 5.4707 0.0011 34 1 4.8924 3.7834 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238964942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -20.327728 kcal Electronic energy + Delta-G solvation = -19681.752757 eV Core-core repulsion = 16583.912181 eV Total energy + Delta-G solvation = -3097.840576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87093 -40.36357 -38.67935 -35.59634 -33.16882 -32.52086 -31.39253 -29.85489 -29.33102 -27.14872 -24.18451 -23.98019 -22.58708 -21.62757 -19.30816 -18.74612 -17.99069 -17.44821 -16.98917 -16.64302 -16.49081 -15.85322 -15.27074 -15.15034 -15.03020 -14.59368 -14.56084 -14.36125 -14.24788 -13.50913 -13.39514 -13.31841 -13.21832 -12.91484 -12.78337 -12.55297 -12.19441 -12.05095 -11.53827 -11.46236 -11.13541 -11.06112 -10.73527 -9.94226 -9.32525 -9.04258 -8.65427 -8.37131 -6.31471 0.01104 0.19944 0.49235 0.99599 1.14927 1.38225 1.41928 1.46842 1.53329 2.18197 2.61707 2.74721 3.23211 3.71000 3.82590 4.02019 4.25329 4.25839 4.31077 4.37786 4.45666 4.59959 4.73614 4.82949 4.85103 4.95092 5.09187 5.13673 5.24834 5.31238 5.44069 5.65921 5.69851 5.83940 6.05410 6.12700 6.20096 6.35801 6.67491 6.91446 7.01728 8.28517 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.006124 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.264588 B = 4571.130276 C = 5854.539724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.128 6.128 3 C -0.125 4.125 4 C -0.115 4.115 5 C 0.013 3.987 6 C -0.199 4.199 7 C -0.075 4.075 8 C -0.241 4.241 9 C -0.105 4.105 10 C -0.185 4.185 11 C 0.104 3.896 12 C -0.474 4.474 13 H 0.077 0.923 14 C 0.044 3.956 15 N -0.815 5.815 16 Si 0.965 3.035 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.264 1.264 20 C -0.085 4.085 21 C -0.133 4.133 22 C 0.076 3.924 23 F -0.140 7.140 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.126 0.874 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -9.459 -1.934 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.112 5.888 3 C -0.238 4.238 4 C -0.138 4.138 5 C 0.011 3.989 6 C -0.200 4.200 7 C -0.093 4.093 8 C -0.260 4.260 9 C -0.123 4.123 10 C -0.204 4.204 11 C 0.101 3.899 12 C -0.503 4.503 13 H 0.095 0.905 14 C -0.172 4.172 15 N -0.440 5.440 16 Si 0.786 3.214 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.189 1.189 20 C -0.105 4.105 21 C -0.153 4.153 22 C 0.051 3.949 23 F -0.118 7.118 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.462 -10.290 -1.929 10.479 hybrid contribution -0.209 1.582 0.697 1.742 sum 0.253 -8.707 -1.233 8.798 Atomic orbital electron populations 1.23803 0.91620 1.08714 1.06448 1.85352 1.09817 1.00697 1.92901 1.21731 0.94610 0.98865 1.08611 1.21251 0.98393 0.91327 1.02863 1.18815 0.93087 0.92020 0.94939 1.18794 0.98403 1.01040 1.01792 1.20886 0.93324 0.98040 0.97052 1.20654 1.02085 0.98930 1.04341 1.20774 0.97782 0.97780 0.95976 1.21029 0.95476 1.01939 1.01944 1.17834 0.91747 0.90030 0.90253 1.19628 1.15536 0.94197 1.20894 0.90535 1.26599 0.96357 0.94594 0.99688 1.69835 1.37592 0.99635 1.36949 0.85490 0.79173 0.78458 0.78244 1.18336 1.19165 1.18872 1.21285 0.91699 0.99706 0.97797 1.21114 1.01446 0.89992 1.02734 1.17225 0.83383 0.86503 1.07806 1.91443 1.60534 1.65586 1.94285 0.88917 0.89476 0.84738 0.84001 0.86687 0.86328 0.87331 0.88131 0.89970 0.85602 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.15 113.37 1.04 -1.62 16 2 S -0.13 -3.53 22.16 -56.49 -1.25 -4.78 16 3 C -0.13 -4.21 6.11 22.61 0.14 -4.07 16 4 C -0.12 -4.04 8.83 22.67 0.20 -3.84 16 5 C 0.01 0.54 4.92 -20.05 -0.10 0.44 16 6 C -0.20 -8.95 5.52 -19.61 -0.11 -9.06 16 7 C -0.07 -3.06 9.50 22.46 0.21 -2.85 16 8 C -0.24 -9.73 10.03 22.40 0.22 -9.50 16 9 C -0.10 -4.59 9.96 22.01 0.22 -4.37 16 10 C -0.18 -9.18 8.62 22.46 0.19 -8.99 16 11 C 0.10 5.22 5.55 -21.12 -0.12 5.10 16 12 C -0.47 -23.68 7.13 23.35 0.17 -23.51 16 13 H 0.08 3.80 6.64 -2.91 -0.02 3.78 16 14 C 0.04 2.10 5.14 85.29 0.44 2.54 16 15 N -0.81 -40.20 11.03 21.85 0.24 -39.96 16 16 Si 0.96 36.78 29.59 68.60 2.03 38.81 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 C -0.08 -3.32 8.00 22.56 0.18 -3.14 16 21 C -0.13 -4.57 10.00 22.25 0.22 -4.34 16 22 C 0.08 2.63 7.28 22.58 0.16 2.79 16 23 F -0.14 -4.73 16.74 44.97 0.75 -3.98 16 24 H 0.09 1.70 7.73 -2.39 -0.02 1.68 16 25 H 0.09 1.72 7.76 -2.39 -0.02 1.70 16 26 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.14 4.44 5.85 -2.91 -0.02 4.42 16 28 H 0.12 4.03 8.04 -2.91 -0.02 4.00 16 29 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 31 H 0.10 5.24 6.26 -2.91 -0.02 5.23 16 32 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 33 H 0.13 5.31 7.32 -2.92 -0.02 5.29 16 34 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -54.81 306.79 5.97 -48.84 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.13 Total: 25.49 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 3.07 Total: -64.42 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.24 Total: -39.96 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.75 Total: -3.98 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.25 Total: -4.78 kcal Total: -54.81 5.97 -48.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238964942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.508 kcal (2) G-P(sol) polarization free energy of solvation -54.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds