Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 103.00124 * 2 1 4 4 C 1.39279 * 119.93466 * 359.72542 * 3 2 1 5 5 C 1.37642 * 120.06377 * 180.27428 * 4 3 2 6 6 C 1.39801 * 119.93216 * 0.02562 * 5 4 3 7 7 C 1.47763 * 120.06135 * 180.02562 * 6 5 4 8 8 C 1.40044 * 119.90035 * 309.97708 * 7 6 5 9 9 C 1.36175 * 120.13130 * 179.97438 * 8 7 6 10 10 C 1.41000 * 119.93514 * 0.02562 * 9 8 7 11 11 C 1.40972 * 120.09567 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99942 * 150.08620 * 11 10 9 13 13 C 1.39928 * 119.99773 * 330.08108 * 11 10 9 14 14 N 1.30854 * 119.99613 * 161.72251 * 13 11 10 15 15 Si 1.86793 * 120.00136 * 341.72715 * 13 11 10 16 16 H 1.48505 * 109.47280 * 95.41155 * 15 13 11 17 17 H 1.48497 * 109.47175 * 215.41520 * 15 13 11 18 18 H 1.48506 * 109.47391 * 335.41601 * 15 13 11 19 19 C 1.40904 * 119.81232 * 359.97438 * 10 9 8 20 20 C 1.36414 * 119.86238 * 359.74525 * 19 10 9 21 21 F 1.35097 * 119.96680 * 180.27241 * 20 19 10 22 22 C 1.39799 * 119.87786 * 359.97438 * 6 5 4 23 23 C 1.37635 * 119.93771 * 0.02562 * 22 6 5 24 24 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47219 * 299.99441 * 1 2 3 26 26 H 1.08998 * 109.47812 * 59.99724 * 1 2 3 27 27 H 1.08003 * 119.97008 * 0.27461 * 4 3 2 28 28 H 1.07998 * 120.03238 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.93710 * 359.95834 * 8 7 6 30 30 H 1.08000 * 120.02846 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99672 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.06720 * 180.02562 * 19 10 9 33 33 H 1.08004 * 120.03369 * 180.02562 * 22 6 5 34 34 H 1.07997 * 119.97128 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1907 2.6655 -0.0058 5 6 1.4974 4.0073 -0.0115 6 6 2.8339 4.4175 -0.0120 7 6 3.1663 5.8572 -0.0176 8 6 2.5642 6.7091 -0.9519 9 6 2.8667 8.0368 -0.9609 10 6 3.7885 8.5548 -0.0280 11 6 4.1045 9.9286 -0.0347 12 1 4.3843 10.4227 0.8840 13 6 4.0559 10.6519 -1.2315 14 7 3.9923 11.9586 -1.2041 15 14 4.0817 9.7521 -2.8683 16 1 2.6900 9.5612 -3.3502 17 1 4.8439 10.5516 -3.8607 18 1 4.7315 8.4280 -2.6952 19 6 4.3928 7.6953 0.9108 20 6 4.0796 6.3676 0.9164 21 9 4.6536 5.5427 1.8193 22 6 3.8552 3.4629 -0.0062 23 6 3.5427 2.1226 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 0.1584 2.3481 -0.0058 28 1 0.7063 4.7426 -0.0156 29 1 1.8587 6.3124 -1.6668 30 1 2.4010 8.6924 -1.6819 31 1 3.9582 12.4599 -2.0338 32 1 5.0991 8.0877 1.6275 33 1 4.8886 3.7770 -0.0062 34 1 4.3313 1.3847 0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239497298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -13.891377 kcal Electronic energy + Delta-G solvation = -19185.164650 eV Core-core repulsion = 16087.603175 eV Total energy + Delta-G solvation = -3097.561475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.01298 -38.94239 -37.51841 -33.98787 -32.08835 -31.06061 -29.65343 -29.42946 -28.79346 -25.46758 -22.53833 -22.36858 -21.28049 -20.52025 -17.95073 -17.63311 -16.51138 -15.65728 -15.32488 -15.18046 -14.94546 -14.59912 -14.41391 -14.18808 -13.94763 -13.44046 -13.23653 -12.97689 -12.95918 -12.62184 -12.36459 -12.22812 -11.82107 -11.38767 -11.24420 -10.95888 -10.88740 -10.52610 -10.24013 -10.04045 -9.82837 -9.58826 -9.26010 -8.77293 -8.00205 -7.74426 -7.24608 -7.11713 -4.76111 1.29290 1.52932 1.64396 2.31853 2.39770 2.43391 2.95421 3.07603 3.16560 3.77970 3.92832 4.24610 4.87324 4.88392 4.99862 5.07567 5.15825 5.29614 5.35576 5.44161 5.66124 5.72544 5.83647 5.99004 6.20278 6.26786 6.43270 6.46056 6.51467 6.58062 6.86937 6.91293 7.07355 7.18538 7.31664 7.42180 7.59671 7.84975 8.06051 8.34562 8.48641 9.75456 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.003758 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.446628 B = 7448.040380 C = 7867.675115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.138 6.138 3 C -0.107 4.107 4 C -0.128 4.128 5 C -0.106 4.106 6 C 0.011 3.989 7 C -0.241 4.241 8 C -0.028 4.028 9 C -0.248 4.248 10 C 0.115 3.885 11 C -0.424 4.424 12 H 0.097 0.903 13 C 0.082 3.918 14 N -0.788 5.788 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.241 1.241 19 C -0.250 4.250 20 C 0.153 3.847 21 F -0.157 7.157 22 C -0.102 4.102 23 C -0.093 4.093 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.291 0.709 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -14.733 -1.053 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.219 4.219 4 C -0.151 4.151 5 C -0.126 4.126 6 C 0.009 3.991 7 C -0.243 4.243 8 C -0.046 4.046 9 C -0.267 4.267 10 C 0.111 3.889 11 C -0.451 4.451 12 H 0.115 0.885 13 C -0.140 4.140 14 N -0.410 5.410 15 Si 0.740 3.260 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.163 1.163 19 C -0.271 4.271 20 C 0.134 3.866 21 F -0.136 7.136 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.338 -15.509 -1.094 16.142 hybrid contribution -0.782 0.918 -0.533 1.318 sum -5.120 -14.591 -1.627 15.549 Atomic orbital electron populations 1.23602 0.95071 1.06606 1.05594 1.85255 1.06203 1.04757 1.93592 1.21581 0.96657 0.95318 1.08390 1.20979 0.97557 0.93151 1.03431 1.21182 0.96125 0.94744 1.00561 1.18832 0.92331 0.92549 0.95400 1.17941 1.09479 0.91664 1.05240 1.20245 0.96225 0.92748 0.95400 1.20762 1.05056 0.95197 1.05719 1.17518 0.88692 0.92852 0.89853 1.19583 1.36976 0.91764 0.96776 0.88519 1.26312 0.90502 0.94810 1.02355 1.69691 1.31703 1.07844 1.31732 0.86237 0.79476 0.81175 0.79080 1.19196 1.21400 1.16343 1.20652 1.07696 0.91137 1.07569 1.17267 0.93507 0.87838 0.87964 1.91375 1.83379 1.72776 1.66072 1.21254 0.99398 0.91683 0.99793 1.20585 0.93873 0.95928 1.01263 0.87801 0.89880 0.89902 0.86436 0.85790 0.87773 0.87502 0.89816 0.86785 0.85729 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.14 101.05 0.92 -0.26 16 2 S -0.14 -1.66 22.56 -107.50 -2.43 -4.09 16 3 C -0.11 -1.56 6.13 -38.81 -0.24 -1.80 16 4 C -0.13 -1.82 9.35 -39.41 -0.37 -2.19 16 5 C -0.11 -1.71 9.49 -39.21 -0.37 -2.08 16 6 C 0.01 0.20 5.31 -104.84 -0.56 -0.36 16 7 C -0.24 -4.96 5.50 -104.57 -0.58 -5.54 16 8 C -0.03 -0.57 9.43 -39.65 -0.37 -0.94 16 9 C -0.25 -5.56 7.10 -39.28 -0.28 -5.84 16 10 C 0.11 2.73 5.10 -106.81 -0.54 2.19 16 11 C -0.42 -10.67 9.54 -37.91 -0.36 -11.03 16 12 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 13 C 0.08 2.00 5.40 -17.34 -0.09 1.90 16 14 N -0.79 -19.44 13.93 55.55 0.77 -18.66 16 15 Si 0.91 19.28 24.51 -169.99 -4.17 15.12 16 16 H -0.27 -5.40 6.70 56.52 0.38 -5.02 16 17 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.24 -5.24 6.87 56.52 0.39 -4.85 16 19 C -0.25 -5.71 9.70 -39.23 -0.38 -6.09 16 20 C 0.15 3.33 7.10 -39.48 -0.28 3.05 16 21 F -0.16 -3.28 15.87 2.25 0.04 -3.24 16 22 C -0.10 -1.73 8.84 -39.22 -0.35 -2.08 16 23 C -0.09 -1.42 9.77 -39.42 -0.39 -1.81 16 24 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.08 0.67 7.75 -51.92 -0.40 0.27 16 26 H 0.08 0.66 7.73 -51.92 -0.40 0.26 16 27 H 0.12 1.36 5.86 -52.48 -0.31 1.05 16 28 H 0.12 1.85 8.03 -52.49 -0.42 1.42 16 29 H 0.10 1.86 8.03 -52.49 -0.42 1.44 16 30 H 0.11 2.35 4.73 -52.49 -0.25 2.10 16 31 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 32 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 33 H 0.12 2.09 7.79 -52.48 -0.41 1.68 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -25.61 305.00 -8.89 -34.50 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.47 Total: 4.64 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -4.23 Total: -32.87 kcal Atomic # 7 Polarization: -19.44 SS G_CDS: 0.77 Total: -18.66 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.17 Total: 15.12 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.43 Total: -4.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.61 -8.89 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.605 kcal (2) G-P(sol) polarization free energy of solvation -25.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds