Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 103.00124 * 2 1 4 4 C 1.39279 * 119.93466 * 359.72542 * 3 2 1 5 5 C 1.37642 * 120.06377 * 180.27428 * 4 3 2 6 6 C 1.39801 * 119.93216 * 0.02562 * 5 4 3 7 7 C 1.47763 * 120.06135 * 180.02562 * 6 5 4 8 8 C 1.40044 * 119.90035 * 309.97708 * 7 6 5 9 9 C 1.36175 * 120.13130 * 179.97438 * 8 7 6 10 10 C 1.41000 * 119.93514 * 0.02562 * 9 8 7 11 11 C 1.40972 * 120.09567 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99942 * 150.08620 * 11 10 9 13 13 C 1.39928 * 119.99773 * 330.08108 * 11 10 9 14 14 N 1.30854 * 119.99613 * 161.72251 * 13 11 10 15 15 Si 1.86793 * 120.00136 * 341.72715 * 13 11 10 16 16 H 1.48505 * 109.47280 * 95.41155 * 15 13 11 17 17 H 1.48497 * 109.47175 * 215.41520 * 15 13 11 18 18 H 1.48506 * 109.47391 * 335.41601 * 15 13 11 19 19 C 1.40904 * 119.81232 * 359.97438 * 10 9 8 20 20 C 1.36414 * 119.86238 * 359.74525 * 19 10 9 21 21 F 1.35097 * 119.96680 * 180.27241 * 20 19 10 22 22 C 1.39799 * 119.87786 * 359.97438 * 6 5 4 23 23 C 1.37635 * 119.93771 * 0.02562 * 22 6 5 24 24 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47219 * 299.99441 * 1 2 3 26 26 H 1.08998 * 109.47812 * 59.99724 * 1 2 3 27 27 H 1.08003 * 119.97008 * 0.27461 * 4 3 2 28 28 H 1.07998 * 120.03238 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.93710 * 359.95834 * 8 7 6 30 30 H 1.08000 * 120.02846 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99672 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.06720 * 180.02562 * 19 10 9 33 33 H 1.08004 * 120.03369 * 180.02562 * 22 6 5 34 34 H 1.07997 * 119.97128 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1907 2.6655 -0.0058 5 6 1.4974 4.0073 -0.0115 6 6 2.8339 4.4175 -0.0120 7 6 3.1663 5.8572 -0.0176 8 6 2.5642 6.7091 -0.9519 9 6 2.8667 8.0368 -0.9609 10 6 3.7885 8.5548 -0.0280 11 6 4.1045 9.9286 -0.0347 12 1 4.3843 10.4227 0.8840 13 6 4.0559 10.6519 -1.2315 14 7 3.9923 11.9586 -1.2041 15 14 4.0817 9.7521 -2.8683 16 1 2.6900 9.5612 -3.3502 17 1 4.8439 10.5516 -3.8607 18 1 4.7315 8.4280 -2.6952 19 6 4.3928 7.6953 0.9108 20 6 4.0796 6.3676 0.9164 21 9 4.6536 5.5427 1.8193 22 6 3.8552 3.4629 -0.0062 23 6 3.5427 2.1226 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 0.1584 2.3481 -0.0058 28 1 0.7063 4.7426 -0.0156 29 1 1.8587 6.3124 -1.6668 30 1 2.4010 8.6924 -1.6819 31 1 3.9582 12.4599 -2.0338 32 1 5.0991 8.0877 1.6275 33 1 4.8886 3.7770 -0.0062 34 1 4.3313 1.3847 0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239497298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -24.467521 kcal Electronic energy + Delta-G solvation = -19185.623266 eV Core-core repulsion = 16087.603175 eV Total energy + Delta-G solvation = -3098.020091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.72544 -40.31968 -39.11002 -35.72576 -33.61886 -32.23096 -31.36198 -30.86517 -29.63605 -27.10464 -23.96163 -23.82353 -22.81921 -22.08816 -19.75055 -18.76645 -17.96091 -17.23925 -16.99941 -16.84432 -16.50251 -15.89724 -15.62323 -15.46124 -14.95873 -14.71440 -14.67136 -14.52299 -14.19661 -14.04679 -13.68593 -13.57111 -13.25451 -12.94003 -12.73212 -12.66460 -12.25319 -12.07854 -11.74593 -11.54392 -11.20465 -11.15516 -10.64177 -9.96775 -9.69111 -9.37881 -9.03342 -8.25274 -6.62090 -0.04358 0.44314 0.61723 0.66629 0.69488 1.26284 1.40836 1.48870 1.51488 2.07698 2.38937 2.76589 3.30160 3.57869 3.89572 3.91749 3.98502 4.16248 4.29322 4.31503 4.41440 4.48369 4.55336 4.67566 4.76602 4.83355 4.88857 5.07357 5.11936 5.19806 5.28213 5.44010 5.48200 5.58405 5.76536 5.80352 5.95708 6.06666 6.22858 6.54945 6.64885 8.03324 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.003758 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.446628 B = 7448.040380 C = 7867.675115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.147 6.147 3 C -0.104 4.104 4 C -0.126 4.126 5 C -0.103 4.103 6 C -0.026 4.026 7 C -0.218 4.218 8 C -0.028 4.028 9 C -0.253 4.253 10 C 0.103 3.897 11 C -0.465 4.465 12 H 0.064 0.936 13 C 0.052 3.948 14 N -0.828 5.828 15 Si 0.963 3.037 16 H -0.247 1.247 17 H -0.274 1.274 18 H -0.253 1.253 19 C -0.265 4.265 20 C 0.142 3.858 21 F -0.153 7.153 22 C -0.108 4.108 23 C -0.102 4.102 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.300 0.700 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -18.322 -2.326 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.094 5.906 3 C -0.216 4.216 4 C -0.150 4.150 5 C -0.123 4.123 6 C -0.028 4.028 7 C -0.220 4.220 8 C -0.046 4.046 9 C -0.272 4.272 10 C 0.100 3.900 11 C -0.493 4.493 12 H 0.082 0.918 13 C -0.166 4.166 14 N -0.452 5.452 15 Si 0.786 3.214 16 H -0.172 1.172 17 H -0.200 1.200 18 H -0.177 1.177 19 C -0.285 4.285 20 C 0.123 3.877 21 F -0.132 7.132 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.145 0.855 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.537 -19.111 -2.356 20.335 hybrid contribution -0.196 1.608 -0.009 1.619 sum -6.733 -17.504 -2.366 18.903 Atomic orbital electron populations 1.23774 0.91631 1.08517 1.06510 1.85390 1.09970 1.02306 1.92947 1.21936 0.96477 0.97258 1.05942 1.21302 0.99115 0.92242 1.02298 1.21334 0.95274 0.96045 0.99641 1.18806 0.93865 0.91114 0.99050 1.18317 1.07070 0.93322 1.03252 1.20591 0.96435 0.91913 0.95680 1.20906 1.04596 0.96286 1.05415 1.17617 0.89219 0.92437 0.90741 1.19502 1.40519 0.92833 0.96467 0.91781 1.26911 0.89835 0.95275 1.04547 1.69703 1.33698 1.08831 1.32964 0.85511 0.80393 0.79516 0.76028 1.17187 1.20041 1.17683 1.20753 1.08084 0.91879 1.07766 1.17392 0.94265 0.87496 0.88579 1.91375 1.83381 1.72471 1.65999 1.21257 0.98942 0.92528 1.00057 1.20774 0.95054 0.95449 1.01203 0.85473 0.89020 0.88863 0.83291 0.84583 0.84384 0.86930 0.88862 0.87128 0.86457 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.14 113.37 1.04 -0.59 16 2 S -0.15 -2.97 22.56 -56.49 -1.27 -4.25 16 3 C -0.10 -2.65 6.13 22.77 0.14 -2.52 16 4 C -0.13 -3.08 9.35 22.38 0.21 -2.87 16 5 C -0.10 -2.98 9.49 22.51 0.21 -2.76 16 6 C -0.03 -0.89 5.31 -20.00 -0.11 -1.00 16 7 C -0.22 -8.67 5.50 -19.83 -0.11 -8.78 16 8 C -0.03 -1.10 9.43 22.23 0.21 -0.89 16 9 C -0.25 -11.18 7.10 22.47 0.16 -11.02 16 10 C 0.10 5.07 5.10 -21.28 -0.11 4.96 16 11 C -0.47 -24.80 9.54 23.35 0.22 -24.58 16 12 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 13 C 0.05 2.62 5.40 85.25 0.46 3.08 16 14 N -0.83 -42.46 13.93 21.82 0.30 -42.16 16 15 Si 0.96 39.59 24.51 68.60 1.68 41.27 16 16 H -0.25 -9.33 6.70 99.48 0.67 -8.66 16 17 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.25 -10.81 6.87 99.48 0.68 -10.13 16 19 C -0.26 -12.47 9.70 22.50 0.22 -12.26 16 20 C 0.14 6.18 7.10 22.33 0.16 6.34 16 21 F -0.15 -6.41 15.87 44.97 0.71 -5.69 16 22 C -0.11 -3.51 8.84 22.50 0.20 -3.31 16 23 C -0.10 -2.85 9.77 22.38 0.22 -2.63 16 24 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 1.00 7.75 -2.39 -0.02 0.98 16 26 H 0.09 0.99 7.73 -2.39 -0.02 0.97 16 27 H 0.15 2.65 5.86 -2.91 -0.02 2.63 16 28 H 0.14 3.53 8.03 -2.91 -0.02 3.51 16 29 H 0.14 4.44 8.03 -2.91 -0.02 4.41 16 30 H 0.11 4.81 4.73 -2.91 -0.01 4.80 16 31 H 0.30 13.66 8.30 -92.71 -0.77 12.90 16 32 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 33 H 0.12 3.87 7.79 -2.91 -0.02 3.85 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -56.83 305.00 5.61 -51.23 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.06 Total: 18.42 kcal Atomic # 6 Polarization: -61.93 SS G_CDS: 3.12 Total: -58.81 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.30 Total: -42.16 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.71 Total: -5.69 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.68 Total: 41.27 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -1.27 Total: -4.25 kcal Total: -56.83 5.61 -51.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.758 kcal (2) G-P(sol) polarization free energy of solvation -56.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds