Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 103.00170 * 2 1 4 4 C 1.39264 * 119.93885 * 179.97438 * 3 2 1 5 5 C 1.37642 * 120.06161 * 180.02562 * 4 3 2 6 6 C 1.39774 * 119.93868 * 0.02562 * 5 4 3 7 7 C 1.47822 * 120.06196 * 179.97438 * 6 5 4 8 8 C 1.40112 * 119.87015 * 179.97438 * 7 6 5 9 9 C 1.36138 * 120.17536 * 180.02562 * 8 7 6 10 10 C 1.40968 * 119.90501 * 0.26231 * 9 8 7 11 11 C 1.40904 * 120.12583 * 179.72049 * 10 9 8 12 12 H 1.08008 * 119.99664 * 204.83499 * 11 10 9 13 13 C 1.39935 * 120.00331 * 24.83994 * 11 10 9 14 14 N 1.30863 * 119.99799 * 17.89522 * 13 11 10 15 15 Si 1.86797 * 120.00109 * 197.90283 * 13 11 10 16 16 H 1.48504 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47414 * 119.99563 * 15 13 11 18 18 H 1.48506 * 109.46856 * 239.99609 * 15 13 11 19 19 C 1.41209 * 119.74458 * 359.41919 * 10 9 8 20 20 F 1.35105 * 120.08638 * 180.27759 * 19 10 9 21 21 C 1.36488 * 119.82215 * 0.59830 * 19 10 9 22 22 C 1.39774 * 119.87799 * 0.24766 * 6 5 4 23 23 C 1.37649 * 119.93756 * 359.47078 * 22 6 5 24 24 H 1.08996 * 109.46865 * 299.99736 * 1 2 3 25 25 H 1.09003 * 109.47104 * 59.99605 * 1 2 3 26 26 H 1.08993 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.96975 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.03344 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.91098 * 359.97438 * 8 7 6 30 30 H 1.07996 * 120.04777 * 179.97438 * 9 8 7 31 31 H 0.96996 * 119.99768 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.95452 * 179.71905 * 21 19 10 33 33 H 1.08000 * 120.03074 * 179.75024 * 22 6 5 34 34 H 1.07993 * 119.97313 * 180.25447 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5426 2.1225 0.0005 5 6 3.8552 3.4630 0.0011 6 6 2.8340 4.4174 0.0016 7 6 3.1665 5.8577 0.0028 8 6 2.1397 6.8110 0.0028 9 6 2.4389 8.1391 0.0033 10 6 3.7854 8.5561 -0.0018 11 6 4.1004 9.9295 -0.0072 12 1 5.0474 10.2648 -0.4038 13 6 3.1863 10.8590 0.5013 14 7 2.2172 10.4618 1.2858 15 14 3.3493 12.6668 0.0600 16 1 4.5195 12.8543 -0.8349 17 1 2.1172 13.1200 -0.6341 18 1 3.5411 13.4633 1.2986 19 6 4.8174 7.5923 0.0051 20 9 6.1103 7.9844 0.0060 21 6 4.5052 6.2636 0.0042 22 6 1.4977 4.0073 0.0069 23 6 1.1909 2.6655 0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.3313 1.3847 0.0014 28 1 4.8885 3.7771 0.0011 29 1 1.1080 6.4913 0.0015 30 1 1.6458 8.8720 0.0029 31 1 1.5833 11.1061 1.6380 32 1 5.2929 5.5246 0.0048 33 1 0.7067 4.7427 0.0114 34 1 0.1587 2.3481 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239497857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -14.457963 kcal Electronic energy + Delta-G solvation = -18961.802817 eV Core-core repulsion = 15864.216773 eV Total energy + Delta-G solvation = -3097.586044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.36161 -38.95791 -37.17927 -34.21129 -31.65648 -31.05590 -29.48863 -29.03222 -28.59076 -25.44358 -22.73232 -22.55278 -20.62185 -20.19687 -17.86519 -17.41552 -16.47497 -15.64200 -15.11479 -15.04370 -14.55933 -14.16549 -14.14774 -13.96580 -13.87777 -13.56594 -13.28424 -12.76886 -12.67547 -12.38990 -12.07752 -11.95288 -11.52660 -11.47903 -11.15593 -11.06812 -10.73602 -10.61003 -10.19527 -9.93976 -9.71803 -9.66807 -9.21560 -8.68585 -7.85116 -7.63557 -7.14946 -6.88267 -4.59069 1.28839 1.63357 1.74857 2.50609 2.55785 2.75303 2.91569 2.97333 3.00445 3.69802 4.03596 4.49119 4.94172 4.95430 5.07790 5.18049 5.33275 5.45555 5.50759 5.67169 5.78606 5.88671 5.94600 6.07991 6.31413 6.37898 6.56783 6.66112 6.70766 6.81415 6.87907 7.06573 7.24862 7.32124 7.51014 7.76227 7.81510 7.88139 8.28039 8.42804 8.60280 9.79233 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.003331 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.375499 B = 8403.339653 C = 9110.676671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.144 6.144 3 C -0.124 4.124 4 C -0.085 4.085 5 C -0.129 4.129 6 C 0.025 3.975 7 C -0.188 4.188 8 C -0.078 4.078 9 C -0.156 4.156 10 C 0.094 3.906 11 C -0.430 4.430 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.770 5.770 15 Si 0.917 3.083 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.270 1.270 19 C -0.031 4.031 20 F -0.163 7.163 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.288 0.712 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -10.331 -1.602 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.096 5.904 3 C -0.236 4.236 4 C -0.108 4.108 5 C -0.149 4.149 6 C 0.023 3.977 7 C -0.189 4.189 8 C -0.097 4.097 9 C -0.176 4.176 10 C 0.091 3.909 11 C -0.458 4.458 12 H 0.107 0.893 13 C -0.149 4.149 14 N -0.392 5.392 15 Si 0.740 3.260 16 H -0.179 1.179 17 H -0.192 1.192 18 H -0.195 1.195 19 C -0.051 4.051 20 F -0.142 7.142 21 C -0.110 4.110 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.856 -11.263 -1.445 11.992 hybrid contribution -0.652 1.955 -0.021 2.061 sum -4.508 -9.308 -1.466 10.446 Atomic orbital electron populations 1.23577 0.95177 1.06463 1.05523 1.85179 1.06122 1.05207 1.93908 1.21455 0.96627 0.95023 1.10517 1.20539 0.93812 0.95845 1.00573 1.21135 0.99337 0.91729 1.02680 1.18974 0.92297 0.92876 0.93573 1.17778 0.92361 0.90050 1.18716 1.20570 0.96734 0.93225 0.99161 1.20821 0.96040 0.94375 1.06333 1.17763 0.91060 0.92740 0.89382 1.19729 1.02856 0.90921 1.32253 0.89301 1.26068 0.93711 1.02669 0.92444 1.69830 1.11617 1.37957 1.19833 0.86093 0.79947 0.80266 0.79673 1.17942 1.19239 1.19517 1.17403 0.77970 0.92489 1.17268 1.91291 1.35485 1.92046 1.95366 1.20345 0.95808 0.93682 1.01200 1.21085 0.96275 0.94733 1.02491 1.20940 0.97419 0.93164 1.02555 0.89961 0.89975 0.87931 0.86297 0.85707 0.88307 0.85570 0.90087 0.87596 0.85760 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.14 101.05 0.92 -0.33 16 2 S -0.14 -1.81 22.56 -107.50 -2.43 -4.24 16 3 C -0.12 -1.88 6.13 -38.82 -0.24 -2.12 16 4 C -0.08 -1.32 9.77 -39.42 -0.39 -1.70 16 5 C -0.13 -2.20 9.41 -39.23 -0.37 -2.57 16 6 C 0.02 0.46 5.88 -104.83 -0.62 -0.15 16 7 C -0.19 -4.00 5.90 -104.66 -0.62 -4.62 16 8 C -0.08 -1.70 9.35 -39.63 -0.37 -2.07 16 9 C -0.16 -3.76 8.62 -39.30 -0.34 -4.10 16 10 C 0.09 2.41 5.58 -106.73 -0.60 1.81 16 11 C -0.43 -10.87 8.75 -37.94 -0.33 -11.20 16 12 H 0.09 2.22 7.73 -52.48 -0.41 1.81 16 13 C 0.07 1.68 5.13 -17.33 -0.09 1.59 16 14 N -0.77 -18.22 10.97 55.55 0.61 -17.61 16 15 Si 0.92 17.28 29.60 -169.99 -5.03 12.25 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 19 C -0.03 -0.77 7.25 -39.09 -0.28 -1.05 16 20 F -0.16 -3.98 16.70 2.25 0.04 -3.95 16 21 C -0.09 -2.02 9.33 -39.60 -0.37 -2.39 16 22 C -0.13 -2.12 9.42 -39.22 -0.37 -2.49 16 23 C -0.12 -1.76 9.35 -39.42 -0.37 -2.13 16 24 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 25 H 0.08 0.71 7.74 -51.92 -0.40 0.30 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.13 2.00 6.17 -52.49 -0.32 1.67 16 29 H 0.10 1.88 6.16 -52.48 -0.32 1.56 16 30 H 0.13 3.06 6.17 -52.49 -0.32 2.74 16 31 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 32 H 0.11 2.09 6.16 -52.48 -0.32 1.76 16 33 H 0.12 1.95 6.17 -52.49 -0.32 1.62 16 34 H 0.12 1.42 5.86 -52.49 -0.31 1.12 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -26.15 304.56 -9.75 -35.90 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.12 Total: 6.58 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -4.42 Total: -33.53 kcal Atomic # 7 Polarization: -18.22 SS G_CDS: 0.61 Total: -17.61 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.43 Total: -4.24 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.15 -9.75 -35.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.442 kcal (2) G-P(sol) polarization free energy of solvation -26.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds