Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 103.00170 * 2 1 4 4 C 1.39264 * 119.93885 * 179.97438 * 3 2 1 5 5 C 1.37642 * 120.06161 * 180.02562 * 4 3 2 6 6 C 1.39774 * 119.93868 * 0.02562 * 5 4 3 7 7 C 1.47822 * 120.06196 * 179.97438 * 6 5 4 8 8 C 1.40112 * 119.87015 * 179.97438 * 7 6 5 9 9 C 1.36138 * 120.17536 * 180.02562 * 8 7 6 10 10 C 1.40968 * 119.90501 * 0.26231 * 9 8 7 11 11 C 1.40904 * 120.12583 * 179.72049 * 10 9 8 12 12 H 1.08008 * 119.99664 * 204.83499 * 11 10 9 13 13 C 1.39935 * 120.00331 * 24.83994 * 11 10 9 14 14 N 1.30863 * 119.99799 * 17.89522 * 13 11 10 15 15 Si 1.86797 * 120.00109 * 197.90283 * 13 11 10 16 16 H 1.48504 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47414 * 119.99563 * 15 13 11 18 18 H 1.48506 * 109.46856 * 239.99609 * 15 13 11 19 19 C 1.41209 * 119.74458 * 359.41919 * 10 9 8 20 20 F 1.35105 * 120.08638 * 180.27759 * 19 10 9 21 21 C 1.36488 * 119.82215 * 0.59830 * 19 10 9 22 22 C 1.39774 * 119.87799 * 0.24766 * 6 5 4 23 23 C 1.37649 * 119.93756 * 359.47078 * 22 6 5 24 24 H 1.08996 * 109.46865 * 299.99736 * 1 2 3 25 25 H 1.09003 * 109.47104 * 59.99605 * 1 2 3 26 26 H 1.08993 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.96975 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.03344 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.91098 * 359.97438 * 8 7 6 30 30 H 1.07996 * 120.04777 * 179.97438 * 9 8 7 31 31 H 0.96996 * 119.99768 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.95452 * 179.71905 * 21 19 10 33 33 H 1.08000 * 120.03074 * 179.75024 * 22 6 5 34 34 H 1.07993 * 119.97313 * 180.25447 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5426 2.1225 0.0005 5 6 3.8552 3.4630 0.0011 6 6 2.8340 4.4174 0.0016 7 6 3.1665 5.8577 0.0028 8 6 2.1397 6.8110 0.0028 9 6 2.4389 8.1391 0.0033 10 6 3.7854 8.5561 -0.0018 11 6 4.1004 9.9295 -0.0072 12 1 5.0474 10.2648 -0.4038 13 6 3.1863 10.8590 0.5013 14 7 2.2172 10.4618 1.2858 15 14 3.3493 12.6668 0.0600 16 1 4.5195 12.8543 -0.8349 17 1 2.1172 13.1200 -0.6341 18 1 3.5411 13.4633 1.2986 19 6 4.8174 7.5923 0.0051 20 9 6.1103 7.9844 0.0060 21 6 4.5052 6.2636 0.0042 22 6 1.4977 4.0073 0.0069 23 6 1.1909 2.6655 0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.3313 1.3847 0.0014 28 1 4.8885 3.7771 0.0011 29 1 1.1080 6.4913 0.0015 30 1 1.6458 8.8720 0.0029 31 1 1.5833 11.1061 1.6380 32 1 5.2929 5.5246 0.0048 33 1 0.7067 4.7427 0.0114 34 1 0.1587 2.3481 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239497857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -24.560868 kcal Electronic energy + Delta-G solvation = -18962.240912 eV Core-core repulsion = 15864.216773 eV Total energy + Delta-G solvation = -3098.024139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.25938 -40.38783 -38.80101 -35.90625 -33.17684 -32.35554 -31.05645 -30.57570 -29.57308 -27.10852 -24.25691 -23.99805 -22.19218 -21.82019 -19.53004 -18.75279 -18.01862 -17.30488 -16.71441 -16.40477 -16.05959 -15.95656 -15.63783 -15.31554 -14.76703 -14.73045 -14.68847 -14.30369 -13.91725 -13.79406 -13.65017 -13.34532 -13.19924 -12.89053 -12.69383 -12.55048 -12.27036 -12.02953 -11.63008 -11.49573 -11.28154 -11.10675 -10.69244 -9.93431 -9.49952 -9.32973 -8.83027 -8.16874 -6.42302 -0.11817 0.48823 0.66345 0.86633 1.02258 1.36219 1.48145 1.52184 1.54672 2.14639 2.47906 2.94459 3.53967 3.79042 3.91466 3.99033 4.16451 4.26576 4.30020 4.32604 4.41875 4.50566 4.58373 4.85996 4.89746 4.93697 5.06344 5.10545 5.17061 5.25422 5.35711 5.51684 5.56637 5.74241 5.93326 6.03076 6.06179 6.13266 6.46008 6.64037 6.79343 8.12651 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.003331 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.375499 B = 8403.339653 C = 9110.676671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.150 6.150 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.128 4.128 6 C -0.012 4.012 7 C -0.172 4.172 8 C -0.082 4.082 9 C -0.169 4.169 10 C 0.064 3.936 11 C -0.476 4.476 12 H 0.075 0.925 13 C 0.039 3.961 14 N -0.801 5.801 15 Si 0.988 3.012 16 H -0.262 1.262 17 H -0.255 1.255 18 H -0.261 1.261 19 C -0.062 4.062 20 F -0.170 7.170 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.120 4.120 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.298 0.702 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -12.732 -1.713 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.091 5.909 3 C -0.229 4.229 4 C -0.118 4.118 5 C -0.147 4.147 6 C -0.014 4.014 7 C -0.173 4.173 8 C -0.101 4.101 9 C -0.188 4.188 10 C 0.061 3.939 11 C -0.503 4.503 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.424 5.424 15 Si 0.807 3.193 16 H -0.185 1.185 17 H -0.179 1.179 18 H -0.186 1.186 19 C -0.082 4.082 20 F -0.149 7.149 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.144 4.144 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.709 -13.705 -1.553 14.928 hybrid contribution -0.194 2.194 0.017 2.202 sum -5.903 -11.511 -1.536 13.028 Atomic orbital electron populations 1.23752 0.91815 1.08429 1.06383 1.85309 1.09813 1.02574 1.93222 1.21868 0.96575 0.97031 1.07471 1.20788 0.94922 0.95550 1.00525 1.21264 0.99309 0.92330 1.01829 1.18943 0.93857 0.91438 0.97208 1.18134 0.91790 0.91807 1.15609 1.20861 0.98392 0.92432 0.98388 1.20834 0.95355 0.95324 1.07322 1.18086 0.91988 0.93394 0.90471 1.19814 1.03583 0.91807 1.35138 0.90681 1.26824 0.92961 1.06551 0.91624 1.69834 1.12424 1.39711 1.20464 0.85064 0.79953 0.74776 0.79463 1.18543 1.17871 1.18585 1.17723 0.77759 0.93572 1.19176 1.91248 1.35831 1.92265 1.95592 1.20601 0.97072 0.93132 1.00916 1.21271 0.95601 0.96029 1.01350 1.21255 0.99033 0.92256 1.01817 0.89114 0.89054 0.85490 0.84431 0.85335 0.85551 0.86360 0.89093 0.85536 0.84857 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.14 113.37 1.04 -0.77 16 2 S -0.15 -3.20 22.56 -56.49 -1.27 -4.47 16 3 C -0.12 -3.15 6.13 22.76 0.14 -3.01 16 4 C -0.09 -2.71 9.77 22.38 0.22 -2.49 16 5 C -0.13 -4.15 9.41 22.50 0.21 -3.94 16 6 C -0.01 -0.44 5.88 -20.00 -0.12 -0.56 16 7 C -0.17 -7.33 5.90 -19.89 -0.12 -7.44 16 8 C -0.08 -3.60 9.35 22.24 0.21 -3.40 16 9 C -0.17 -8.43 8.62 22.45 0.19 -8.24 16 10 C 0.06 3.45 5.58 -21.23 -0.12 3.33 16 11 C -0.48 -25.50 8.75 23.33 0.20 -25.29 16 12 H 0.08 4.04 7.73 -2.91 -0.02 4.01 16 13 C 0.04 1.86 5.13 85.25 0.44 2.30 16 14 N -0.80 -39.13 10.97 21.83 0.24 -38.89 16 15 Si 0.99 36.32 29.60 68.60 2.03 38.35 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 17 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 19 C -0.06 -3.22 7.25 22.59 0.16 -3.05 16 20 F -0.17 -8.78 16.70 44.97 0.75 -8.03 16 21 C -0.10 -4.45 9.33 22.26 0.21 -4.24 16 22 C -0.12 -3.82 9.42 22.50 0.21 -3.61 16 23 C -0.12 -3.17 9.35 22.38 0.21 -2.96 16 24 H 0.09 1.12 7.74 -2.39 -0.02 1.10 16 25 H 0.09 1.12 7.74 -2.39 -0.02 1.10 16 26 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.13 3.97 6.17 -2.91 -0.02 3.95 16 29 H 0.13 4.69 6.16 -2.91 -0.02 4.67 16 30 H 0.12 5.99 6.17 -2.91 -0.02 5.97 16 31 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 32 H 0.13 5.02 6.16 -2.91 -0.02 5.01 16 33 H 0.13 3.82 6.17 -2.91 -0.02 3.80 16 34 H 0.15 2.90 5.86 -2.91 -0.02 2.88 16 Total: -1.00 -58.87 304.56 5.98 -52.89 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 1.14 Total: 23.53 kcal Atomic # 6 Polarization: -66.46 SS G_CDS: 3.09 Total: -63.37 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.24 Total: -38.89 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.75 Total: -8.03 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.27 Total: -4.47 kcal Total: -58.87 5.98 -52.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.333 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds