Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76198 * 103.00166 * 2 1 4 4 C 1.39079 * 119.95789 * 359.72660 * 3 2 1 5 5 C 1.37837 * 120.04392 * 180.27964 * 4 3 2 6 6 C 1.39423 * 119.95745 * 0.02562 * 5 4 3 7 7 C 1.48333 * 120.04174 * 180.02562 * 6 5 4 8 8 C 1.39604 * 120.02035 * 129.70382 * 7 6 5 9 9 C 1.38472 * 120.41829 * 179.73525 * 8 7 6 10 10 C 1.37659 * 120.45289 * 0.52201 * 9 8 7 11 11 C 1.40759 * 120.02172 * 359.75513 * 10 9 8 12 12 C 1.41319 * 120.20289 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99763 * 204.66060 * 12 11 10 14 14 C 1.39928 * 120.00281 * 24.66398 * 12 11 10 15 15 N 1.30849 * 119.99746 * 17.79668 * 14 12 11 16 16 Si 1.86800 * 119.99999 * 197.79640 * 14 12 11 17 17 H 1.48497 * 109.47212 * 60.00186 * 16 14 12 18 18 H 1.48504 * 109.46930 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47061 * 299.99602 * 16 14 12 20 20 C 1.39095 * 120.01483 * 309.97518 * 7 6 5 21 21 F 1.35092 * 120.22651 * 359.97438 * 20 7 6 22 22 C 1.39422 * 119.91639 * 359.97438 * 6 5 4 23 23 C 1.37833 * 119.95893 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47444 * 299.99573 * 1 2 3 25 25 H 1.08999 * 109.47260 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.97972 * 0.25691 * 4 3 2 28 28 H 1.07995 * 120.02089 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.79051 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.77164 * 180.23844 * 9 8 7 31 31 H 1.08003 * 119.98570 * 179.74078 * 10 9 8 32 32 H 0.96999 * 119.99782 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.01878 * 180.02562 * 22 6 5 34 34 H 1.08004 * 119.97521 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1925 2.6646 -0.0057 5 6 1.5006 4.0081 -0.0116 6 6 2.8336 4.4167 -0.0123 7 6 3.1673 5.8620 -0.0180 8 6 4.0761 6.3726 0.9106 9 6 4.3978 7.7195 0.9092 10 6 3.8177 8.5744 -0.0006 11 6 2.8946 8.0806 -0.9416 12 6 2.2964 8.9549 -1.8770 13 1 1.3406 8.7061 -2.3141 14 6 2.9424 10.1428 -2.2369 15 7 4.2205 10.2906 -1.9986 16 14 1.9802 11.5177 -3.0574 17 1 0.8868 11.9627 -2.1565 18 1 2.8879 12.6598 -3.3351 19 1 1.4010 11.0238 -4.3325 20 6 2.5706 6.7102 -0.9449 21 9 1.6867 6.2226 -1.8426 22 6 3.8526 3.4651 -0.0065 23 6 3.5406 2.1225 0.0004 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.1600 2.3477 -0.0060 28 1 0.7100 4.7437 -0.0156 29 1 4.5342 5.7123 1.6322 30 1 5.1051 8.1027 1.6298 31 1 4.0709 9.6242 0.0077 32 1 4.6683 11.1142 -2.2478 33 1 4.8857 3.7797 -0.0066 34 1 4.3297 1.3852 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239497965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -13.975784 kcal Electronic energy + Delta-G solvation = -19266.011670 eV Core-core repulsion = 16168.446535 eV Total energy + Delta-G solvation = -3097.565135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.31972 -38.91419 -37.13278 -34.00428 -31.80633 -30.98939 -29.73584 -29.00585 -27.90873 -25.42626 -22.95071 -22.36431 -20.72420 -20.34660 -17.73884 -17.31151 -16.12597 -15.66545 -15.40360 -14.90924 -14.69389 -14.36106 -14.17247 -13.91441 -13.90869 -13.47149 -13.07647 -12.90459 -12.60250 -12.50250 -11.93211 -11.85711 -11.52109 -11.35086 -11.12840 -10.92985 -10.82365 -10.54307 -10.26996 -9.91940 -9.68482 -9.41314 -9.27655 -8.74064 -7.73561 -7.50741 -7.04850 -6.88367 -4.50652 1.32258 1.54021 1.65365 2.40247 2.60424 2.66585 3.00279 3.03115 3.10603 3.83762 4.00542 4.45014 4.90575 4.92303 5.04421 5.11599 5.28931 5.39314 5.47821 5.66620 5.75097 5.80548 5.98342 6.15507 6.27767 6.46509 6.47691 6.54957 6.76028 6.83854 7.02089 7.10103 7.16919 7.41107 7.50244 7.81857 7.87148 7.98118 8.42100 8.63750 8.72374 10.02722 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.003744 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.328186 B = 7476.115635 C = 8116.823295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.136 6.136 3 C -0.098 4.098 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.014 4.014 7 C -0.069 4.069 8 C -0.200 4.200 9 C -0.111 4.111 10 C -0.141 4.141 11 C 0.085 3.915 12 C -0.455 4.455 13 H 0.083 0.917 14 C 0.077 3.923 15 N -0.788 5.788 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.010 4.010 21 F -0.158 7.158 22 C -0.094 4.094 23 C -0.100 4.100 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.284 0.716 33 H 0.129 0.871 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -11.082 3.789 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.104 5.896 3 C -0.210 4.210 4 C -0.154 4.154 5 C -0.106 4.106 6 C -0.016 4.016 7 C -0.070 4.070 8 C -0.220 4.220 9 C -0.130 4.130 10 C -0.161 4.161 11 C 0.082 3.918 12 C -0.483 4.483 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.413 5.413 16 Si 0.737 3.263 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.030 4.030 21 F -0.137 7.137 22 C -0.113 4.113 23 C -0.123 4.123 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.665 -11.992 3.704 12.831 hybrid contribution -1.273 1.712 -0.594 2.215 sum -3.938 -10.280 3.110 11.439 Atomic orbital electron populations 1.23617 0.94960 1.06654 1.05724 1.85241 1.06342 1.04523 1.93465 1.21554 0.96722 0.95483 1.07242 1.21002 0.97742 0.93042 1.03654 1.21173 0.96281 0.94905 0.98268 1.19002 0.92714 0.93034 0.96851 1.18282 1.00492 0.89931 0.98251 1.20246 1.03845 0.95489 1.02414 1.20666 0.99865 0.93448 0.99020 1.21262 1.00221 0.99764 0.94823 1.17549 0.92444 0.88948 0.92830 1.19485 1.05578 1.02367 1.20903 0.89912 1.25911 0.94522 0.99233 0.94521 1.69802 1.09033 1.26430 1.36045 0.86272 0.80305 0.79437 0.80274 1.18624 1.20148 1.18798 1.17811 0.98955 0.91901 0.94360 1.91274 1.67137 1.88286 1.66959 1.21182 0.99379 0.91540 0.99240 1.20597 0.93947 0.95901 1.01858 0.89835 0.89774 0.87747 0.86237 0.85604 0.88272 0.88449 0.85581 0.90460 0.85299 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.14 101.05 0.92 -0.33 16 2 S -0.14 -1.67 22.56 -107.50 -2.43 -4.10 16 3 C -0.10 -1.47 6.12 -38.96 -0.24 -1.71 16 4 C -0.13 -2.01 9.35 -39.42 -0.37 -2.38 16 5 C -0.09 -1.55 8.85 -39.29 -0.35 -1.90 16 6 C -0.01 -0.27 5.31 -104.86 -0.56 -0.83 16 7 C -0.07 -1.53 5.47 -104.92 -0.57 -2.10 16 8 C -0.20 -4.25 9.51 -38.99 -0.37 -4.62 16 9 C -0.11 -2.45 10.01 -39.71 -0.40 -2.84 16 10 C -0.14 -3.49 8.69 -38.84 -0.34 -3.82 16 11 C 0.09 2.24 5.57 -106.80 -0.60 1.65 16 12 C -0.45 -11.96 8.78 -37.78 -0.33 -12.29 16 13 H 0.08 2.15 7.74 -52.48 -0.41 1.75 16 14 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 15 N -0.79 -19.61 10.96 55.55 0.61 -19.00 16 16 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.01 -0.25 7.16 -38.29 -0.27 -0.52 16 21 F -0.16 -3.92 15.32 2.25 0.03 -3.89 16 22 C -0.09 -1.60 9.49 -39.29 -0.37 -1.97 16 23 C -0.10 -1.53 9.78 -39.42 -0.39 -1.91 16 24 H 0.08 0.70 7.75 -51.92 -0.40 0.30 16 25 H 0.08 0.73 7.73 -51.92 -0.40 0.33 16 26 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.12 1.51 5.86 -52.48 -0.31 1.21 16 28 H 0.13 2.26 7.77 -52.49 -0.41 1.85 16 29 H 0.10 1.85 8.04 -52.48 -0.42 1.43 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.13 3.17 6.16 -52.48 -0.32 2.85 16 32 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 33 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 34 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -27.17 309.75 -9.95 -37.13 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.49 Total: 5.76 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -4.32 Total: -33.79 kcal Atomic # 7 Polarization: -19.61 SS G_CDS: 0.61 Total: -19.00 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.03 Total: -3.89 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.43 Total: -4.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.17 -9.95 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.150 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds