Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76198 * 103.00166 * 2 1 4 4 C 1.39079 * 119.95789 * 359.72660 * 3 2 1 5 5 C 1.37837 * 120.04392 * 180.27964 * 4 3 2 6 6 C 1.39423 * 119.95745 * 0.02562 * 5 4 3 7 7 C 1.48333 * 120.04174 * 180.02562 * 6 5 4 8 8 C 1.39604 * 120.02035 * 129.70382 * 7 6 5 9 9 C 1.38472 * 120.41829 * 179.73525 * 8 7 6 10 10 C 1.37659 * 120.45289 * 0.52201 * 9 8 7 11 11 C 1.40759 * 120.02172 * 359.75513 * 10 9 8 12 12 C 1.41319 * 120.20289 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99763 * 204.66060 * 12 11 10 14 14 C 1.39928 * 120.00281 * 24.66398 * 12 11 10 15 15 N 1.30849 * 119.99746 * 17.79668 * 14 12 11 16 16 Si 1.86800 * 119.99999 * 197.79640 * 14 12 11 17 17 H 1.48497 * 109.47212 * 60.00186 * 16 14 12 18 18 H 1.48504 * 109.46930 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47061 * 299.99602 * 16 14 12 20 20 C 1.39095 * 120.01483 * 309.97518 * 7 6 5 21 21 F 1.35092 * 120.22651 * 359.97438 * 20 7 6 22 22 C 1.39422 * 119.91639 * 359.97438 * 6 5 4 23 23 C 1.37833 * 119.95893 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47444 * 299.99573 * 1 2 3 25 25 H 1.08999 * 109.47260 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.97972 * 0.25691 * 4 3 2 28 28 H 1.07995 * 120.02089 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.79051 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.77164 * 180.23844 * 9 8 7 31 31 H 1.08003 * 119.98570 * 179.74078 * 10 9 8 32 32 H 0.96999 * 119.99782 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.01878 * 180.02562 * 22 6 5 34 34 H 1.08004 * 119.97521 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1925 2.6646 -0.0057 5 6 1.5006 4.0081 -0.0116 6 6 2.8336 4.4167 -0.0123 7 6 3.1673 5.8620 -0.0180 8 6 4.0761 6.3726 0.9106 9 6 4.3978 7.7195 0.9092 10 6 3.8177 8.5744 -0.0006 11 6 2.8946 8.0806 -0.9416 12 6 2.2964 8.9549 -1.8770 13 1 1.3406 8.7061 -2.3141 14 6 2.9424 10.1428 -2.2369 15 7 4.2205 10.2906 -1.9986 16 14 1.9802 11.5177 -3.0574 17 1 0.8868 11.9627 -2.1565 18 1 2.8879 12.6598 -3.3351 19 1 1.4010 11.0238 -4.3325 20 6 2.5706 6.7102 -0.9449 21 9 1.6867 6.2226 -1.8426 22 6 3.8526 3.4651 -0.0065 23 6 3.5406 2.1225 0.0004 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.1600 2.3477 -0.0060 28 1 0.7100 4.7437 -0.0156 29 1 4.5342 5.7123 1.6322 30 1 5.1051 8.1027 1.6298 31 1 4.0709 9.6242 0.0077 32 1 4.6683 11.1142 -2.2478 33 1 4.8857 3.7797 -0.0066 34 1 4.3297 1.3852 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239497965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -24.963913 kcal Electronic energy + Delta-G solvation = -19266.488151 eV Core-core repulsion = 16168.446535 eV Total energy + Delta-G solvation = -3098.041616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.23046 -40.29087 -38.83986 -35.79362 -33.31908 -32.21609 -31.53965 -29.97608 -29.32916 -27.28847 -24.45177 -23.69245 -22.45775 -21.98459 -19.32374 -18.64029 -17.96236 -17.22596 -17.04587 -16.42341 -16.15478 -15.89376 -15.58430 -15.45615 -14.75122 -14.71577 -14.65927 -14.39388 -13.86082 -13.73162 -13.63321 -13.41945 -13.11204 -12.90526 -12.74044 -12.51020 -12.26821 -12.09356 -11.72084 -11.49387 -11.18925 -11.11781 -10.71611 -10.00180 -9.46434 -9.23198 -8.73758 -8.23770 -6.45154 -0.04734 0.38453 0.58242 0.80091 0.94704 1.35632 1.46338 1.46714 1.50075 2.17080 2.56195 2.74427 3.46991 3.79149 3.87547 3.92285 4.00354 4.26271 4.29181 4.38748 4.44212 4.53619 4.63233 4.77383 4.86212 4.93866 5.00007 5.10857 5.19552 5.23892 5.24848 5.53719 5.61741 5.75278 5.86368 5.98381 6.01055 6.14830 6.52423 6.74382 6.84428 8.23077 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.003744 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.328186 B = 7476.115635 C = 8116.823295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.133 6.133 3 C -0.098 4.098 4 C -0.130 4.130 5 C -0.099 4.099 6 C -0.050 4.050 7 C -0.061 4.061 8 C -0.195 4.195 9 C -0.107 4.107 10 C -0.164 4.164 11 C 0.057 3.943 12 C -0.497 4.497 13 H 0.069 0.931 14 C 0.041 3.959 15 N -0.815 5.815 16 Si 0.984 3.016 17 H -0.258 1.258 18 H -0.260 1.260 19 H -0.264 1.264 20 C -0.045 4.045 21 F -0.166 7.166 22 C -0.094 4.094 23 C -0.101 4.101 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.294 0.706 33 H 0.138 0.862 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -12.936 4.466 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.108 5.892 3 C -0.210 4.210 4 C -0.153 4.153 5 C -0.119 4.119 6 C -0.052 4.052 7 C -0.062 4.062 8 C -0.214 4.214 9 C -0.125 4.125 10 C -0.183 4.183 11 C 0.054 3.946 12 C -0.526 4.526 13 H 0.087 0.913 14 C -0.176 4.176 15 N -0.440 5.440 16 Si 0.804 3.196 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.188 1.188 20 C -0.065 4.065 21 F -0.145 7.145 22 C -0.114 4.114 23 C -0.124 4.124 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.784 -13.872 4.394 14.815 hybrid contribution -1.248 2.013 -0.724 2.476 sum -4.032 -11.859 3.670 13.053 Atomic orbital electron populations 1.23791 0.92009 1.08602 1.06382 1.85291 1.09591 1.01536 1.92796 1.21919 0.96614 0.97470 1.04976 1.21231 0.99362 0.91916 1.02824 1.21171 0.95528 0.96074 0.99089 1.18974 0.94080 0.91778 1.00355 1.18622 0.99211 0.91521 0.96872 1.20660 1.02961 0.95620 1.02147 1.21020 0.99436 0.93550 0.98487 1.21255 1.01268 0.99813 0.95978 1.17911 0.93337 0.89787 0.93521 1.19645 1.05853 1.04462 1.22619 0.91274 1.26702 0.95309 1.00792 0.94752 1.69825 1.10123 1.27421 1.36657 0.85230 0.78978 0.76479 0.78947 1.18267 1.18346 1.18832 1.18137 1.00304 0.92326 0.95713 1.91226 1.67570 1.88303 1.67430 1.21281 0.99206 0.92012 0.98900 1.20888 0.94978 0.95580 1.00962 0.88967 0.89337 0.85170 0.83624 0.86881 0.85074 0.85255 0.86671 0.89533 0.84447 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.14 113.37 1.04 -0.92 16 2 S -0.13 -2.84 22.56 -56.49 -1.27 -4.11 16 3 C -0.10 -2.68 6.12 22.67 0.14 -2.54 16 4 C -0.13 -3.77 9.35 22.38 0.21 -3.56 16 5 C -0.10 -3.54 8.85 22.46 0.20 -3.34 16 6 C -0.05 -1.92 5.31 -20.02 -0.11 -2.03 16 7 C -0.06 -2.77 5.47 -20.05 -0.11 -2.88 16 8 C -0.19 -8.12 9.51 22.66 0.22 -7.90 16 9 C -0.11 -4.65 10.01 22.19 0.22 -4.43 16 10 C -0.16 -8.35 8.69 22.75 0.20 -8.15 16 11 C 0.06 3.16 5.57 -21.27 -0.12 3.04 16 12 C -0.50 -27.61 8.78 23.44 0.21 -27.41 16 13 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 14 C 0.04 2.05 5.14 85.25 0.44 2.49 16 15 N -0.82 -41.65 10.96 21.82 0.24 -41.41 16 16 Si 0.98 38.14 29.60 68.60 2.03 40.17 16 17 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 C -0.04 -2.33 7.16 23.11 0.17 -2.17 16 21 F -0.17 -8.75 15.32 44.97 0.69 -8.06 16 22 C -0.09 -3.10 9.49 22.46 0.21 -2.88 16 23 C -0.10 -2.85 9.78 22.37 0.22 -2.64 16 24 H 0.09 1.19 7.75 -2.39 -0.02 1.18 16 25 H 0.09 1.23 7.73 -2.39 -0.02 1.21 16 26 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.15 3.33 5.86 -2.91 -0.02 3.31 16 28 H 0.11 4.23 7.77 -2.91 -0.02 4.20 16 29 H 0.13 4.59 8.04 -2.91 -0.02 4.56 16 30 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.12 6.03 6.16 -2.91 -0.02 6.01 16 32 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 33 H 0.14 4.14 8.04 -2.91 -0.02 4.12 16 34 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -61.40 309.75 5.93 -55.47 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.12 Total: 23.26 kcal Atomic # 6 Polarization: -68.45 SS G_CDS: 3.12 Total: -65.32 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.24 Total: -41.41 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.69 Total: -8.06 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.27 Total: -4.11 kcal Total: -61.40 5.93 -55.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.509 kcal (2) G-P(sol) polarization free energy of solvation -61.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds