Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00010 * 2 1 4 4 C 1.39091 * 119.95811 * 180.02562 * 3 2 1 5 5 C 1.37829 * 120.04183 * 180.02562 * 4 3 2 6 6 C 1.39437 * 119.95752 * 359.97438 * 5 4 3 7 7 C 1.48325 * 120.03873 * 179.97438 * 6 5 4 8 8 C 1.38690 * 120.01817 * 130.00554 * 7 6 5 9 9 C 1.40529 * 119.65940 * 180.02562 * 8 7 6 10 10 C 1.41337 * 120.16001 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00538 * 154.65312 * 10 9 8 12 12 C 1.39894 * 119.99901 * 334.66305 * 10 9 8 13 13 N 1.30874 * 119.99787 * 342.88323 * 12 10 9 14 14 Si 1.86800 * 120.00174 * 162.88364 * 12 10 9 15 15 H 1.48501 * 109.46785 * 90.00185 * 14 12 10 16 16 H 1.48502 * 109.47063 * 209.99810 * 14 12 10 17 17 H 1.48492 * 109.47043 * 330.00103 * 14 12 10 18 18 C 1.40860 * 119.69149 * 359.97438 * 9 8 7 19 19 C 1.37572 * 120.02454 * 0.02569 * 18 9 8 20 20 C 1.38745 * 120.35006 * 0.25092 * 19 18 9 21 21 F 1.35102 * 119.84527 * 179.70254 * 20 19 18 22 22 C 1.39426 * 119.91511 * 0.25615 * 6 5 4 23 23 C 1.37826 * 119.96273 * 359.46691 * 22 6 5 24 24 H 1.08998 * 109.47096 * 299.99929 * 1 2 3 25 25 H 1.09004 * 109.46943 * 60.00070 * 1 2 3 26 26 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.98118 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.02417 * 180.02562 * 5 4 3 29 29 H 1.08002 * 120.16752 * 359.97013 * 8 7 6 30 30 H 0.96991 * 119.99792 * 179.97438 * 13 12 10 31 31 H 1.07997 * 119.98908 * 180.02562 * 18 9 8 32 32 H 1.08002 * 119.82584 * 179.97438 * 19 18 9 33 33 H 1.08006 * 120.01630 * 179.72511 * 22 6 5 34 34 H 1.08002 * 119.97812 * 180.25264 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5408 2.1225 -0.0005 5 6 3.8528 3.4650 0.0000 6 6 2.8337 4.4167 0.0005 7 6 3.1674 5.8619 0.0017 8 6 2.5715 6.7123 -0.9176 9 6 2.8936 8.0802 -0.9102 10 6 2.2922 8.9564 -1.8419 11 1 2.1968 10.0072 -1.6114 12 6 1.8203 8.4626 -3.0627 13 7 2.2189 7.2928 -3.4934 14 14 0.6213 9.4728 -4.0782 15 1 1.3769 10.3496 -5.0086 16 1 -0.2560 8.5631 -4.8580 17 1 -0.2101 10.3088 -3.1755 18 6 3.8179 8.5742 0.0310 19 6 4.4014 7.7191 0.9371 20 6 4.0887 6.3674 0.9272 21 9 4.6723 5.5358 1.8178 22 6 1.5007 4.0080 0.0059 23 6 1.1925 2.6647 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.3299 1.3851 -0.0005 28 1 4.8859 3.7796 -0.0008 29 1 1.8642 6.3251 -1.6361 30 1 1.8914 6.9502 -4.3397 31 1 4.0686 9.6246 0.0413 32 1 5.1099 8.1013 1.6570 33 1 0.7100 4.7438 0.0108 34 1 0.1600 2.3479 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239498029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -14.803264 kcal Electronic energy + Delta-G solvation = -19359.262466 eV Core-core repulsion = 16261.661448 eV Total energy + Delta-G solvation = -3097.601017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.54871 -38.85531 -37.18962 -33.77091 -32.05782 -30.94090 -29.48309 -29.00286 -28.13030 -25.17096 -22.93868 -22.33150 -21.01165 -20.14611 -17.69709 -17.31006 -16.27046 -15.69183 -15.37349 -14.98600 -14.52815 -14.45483 -14.12762 -13.98954 -13.86577 -13.40091 -13.02559 -12.86037 -12.55204 -12.36100 -12.03286 -12.00565 -11.56074 -11.21995 -11.17160 -11.04666 -10.89104 -10.37725 -10.21422 -10.06931 -9.61671 -9.45359 -9.19204 -8.65629 -7.81834 -7.46872 -7.02802 -6.90076 -4.50730 1.39921 1.59816 1.73757 2.46339 2.54310 2.71492 2.99413 3.00077 3.06622 3.81624 4.07198 4.40832 4.94880 4.96616 5.10207 5.19403 5.36400 5.42388 5.52103 5.67920 5.78508 5.81968 6.01711 6.05079 6.34364 6.51109 6.55688 6.68310 6.80289 6.85259 7.02476 7.08701 7.22542 7.32469 7.56498 7.67910 7.83554 8.03338 8.38281 8.67995 8.71381 10.02305 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004898 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.680123 B = 5714.779390 C = 7147.295790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.137 6.137 3 C -0.098 4.098 4 C -0.099 4.099 5 C -0.087 4.087 6 C -0.010 4.010 7 C -0.073 4.073 8 C -0.121 4.121 9 C 0.101 3.899 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.075 3.925 13 N -0.789 5.789 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.259 1.259 18 C -0.200 4.200 19 C -0.118 4.118 20 C -0.030 4.030 21 F -0.168 7.168 22 C -0.091 4.091 23 C -0.132 4.132 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.284 0.716 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -8.775 2.959 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.103 5.897 3 C -0.210 4.210 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.012 4.012 7 C -0.074 4.074 8 C -0.140 4.140 9 C 0.098 3.902 10 C -0.485 4.485 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.414 5.414 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.183 1.183 18 C -0.220 4.220 19 C -0.137 4.137 20 C -0.050 4.050 21 F -0.147 7.147 22 C -0.110 4.110 23 C -0.155 4.155 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.937 -10.029 2.775 10.813 hybrid contribution -1.173 1.427 -0.461 1.904 sum -4.110 -8.603 2.314 9.811 Atomic orbital electron populations 1.23609 0.95038 1.06592 1.05683 1.85229 1.06250 1.04660 1.93530 1.21532 0.96700 0.95396 1.07367 1.20583 0.93927 0.95870 1.01812 1.21175 0.99438 0.91606 0.98450 1.18966 0.92740 0.92942 0.96601 1.18497 0.99605 0.91127 0.98176 1.21346 1.01236 0.93229 0.98181 1.17582 0.89313 0.92162 0.91133 1.19566 1.33283 0.96252 0.99411 0.89990 1.25945 0.95195 0.95167 0.98075 1.69810 1.34683 1.17580 1.19295 0.86287 0.80489 0.80267 0.79649 1.19333 1.19982 1.18319 1.20917 1.01783 0.98310 1.00966 1.20466 1.01314 0.91683 1.00240 1.17237 1.04020 0.87898 0.95879 1.91293 1.83810 1.72138 1.67459 1.21137 0.96091 0.94884 0.98929 1.20978 0.97663 0.93068 1.03829 0.89863 0.89806 0.87802 0.85910 0.85539 0.85195 0.90512 0.87842 0.87869 0.85536 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.15 101.05 0.92 -0.40 16 2 S -0.14 -1.78 22.56 -107.50 -2.43 -4.21 16 3 C -0.10 -1.55 6.12 -38.95 -0.24 -1.79 16 4 C -0.10 -1.64 9.78 -39.41 -0.39 -2.03 16 5 C -0.09 -1.64 8.84 -39.28 -0.35 -1.98 16 6 C -0.01 -0.21 5.32 -104.86 -0.56 -0.77 16 7 C -0.07 -1.68 5.47 -104.91 -0.57 -2.25 16 8 C -0.12 -2.96 8.13 -38.55 -0.31 -3.27 16 9 C 0.10 2.52 5.56 -106.86 -0.59 1.93 16 10 C -0.46 -11.32 9.04 -37.78 -0.34 -11.66 16 11 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 12 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 13 N -0.79 -19.38 10.96 55.54 0.61 -18.77 16 14 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 C -0.20 -4.63 9.78 -38.83 -0.38 -5.01 16 19 C -0.12 -2.61 9.99 -39.64 -0.40 -3.01 16 20 C -0.03 -0.70 7.18 -38.72 -0.28 -0.98 16 21 F -0.17 -3.70 15.84 2.25 0.04 -3.67 16 22 C -0.09 -1.66 9.49 -39.29 -0.37 -2.04 16 23 C -0.13 -2.10 9.35 -39.42 -0.37 -2.47 16 24 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 25 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 26 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.13 2.34 7.75 -52.49 -0.41 1.94 16 29 H 0.13 3.28 6.16 -52.49 -0.32 2.95 16 30 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 31 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.13 2.22 8.04 -52.48 -0.42 1.80 16 34 H 0.12 1.56 5.86 -52.49 -0.31 1.25 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -26.40 310.41 -9.95 -36.34 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.50 Total: 7.10 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -4.31 Total: -34.06 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.61 Total: -18.77 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.43 Total: -4.21 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.40 -9.95 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.541 kcal (2) G-P(sol) polarization free energy of solvation -26.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds