Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00010 * 2 1 4 4 C 1.39091 * 119.95811 * 180.02562 * 3 2 1 5 5 C 1.37829 * 120.04183 * 180.02562 * 4 3 2 6 6 C 1.39437 * 119.95752 * 359.97438 * 5 4 3 7 7 C 1.48325 * 120.03873 * 179.97438 * 6 5 4 8 8 C 1.38690 * 120.01817 * 130.00554 * 7 6 5 9 9 C 1.40529 * 119.65940 * 180.02562 * 8 7 6 10 10 C 1.41337 * 120.16001 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00538 * 154.65312 * 10 9 8 12 12 C 1.39894 * 119.99901 * 334.66305 * 10 9 8 13 13 N 1.30874 * 119.99787 * 342.88323 * 12 10 9 14 14 Si 1.86800 * 120.00174 * 162.88364 * 12 10 9 15 15 H 1.48501 * 109.46785 * 90.00185 * 14 12 10 16 16 H 1.48502 * 109.47063 * 209.99810 * 14 12 10 17 17 H 1.48492 * 109.47043 * 330.00103 * 14 12 10 18 18 C 1.40860 * 119.69149 * 359.97438 * 9 8 7 19 19 C 1.37572 * 120.02454 * 0.02569 * 18 9 8 20 20 C 1.38745 * 120.35006 * 0.25092 * 19 18 9 21 21 F 1.35102 * 119.84527 * 179.70254 * 20 19 18 22 22 C 1.39426 * 119.91511 * 0.25615 * 6 5 4 23 23 C 1.37826 * 119.96273 * 359.46691 * 22 6 5 24 24 H 1.08998 * 109.47096 * 299.99929 * 1 2 3 25 25 H 1.09004 * 109.46943 * 60.00070 * 1 2 3 26 26 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.98118 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.02417 * 180.02562 * 5 4 3 29 29 H 1.08002 * 120.16752 * 359.97013 * 8 7 6 30 30 H 0.96991 * 119.99792 * 179.97438 * 13 12 10 31 31 H 1.07997 * 119.98908 * 180.02562 * 18 9 8 32 32 H 1.08002 * 119.82584 * 179.97438 * 19 18 9 33 33 H 1.08006 * 120.01630 * 179.72511 * 22 6 5 34 34 H 1.08002 * 119.97812 * 180.25264 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5408 2.1225 -0.0005 5 6 3.8528 3.4650 0.0000 6 6 2.8337 4.4167 0.0005 7 6 3.1674 5.8619 0.0017 8 6 2.5715 6.7123 -0.9176 9 6 2.8936 8.0802 -0.9102 10 6 2.2922 8.9564 -1.8419 11 1 2.1968 10.0072 -1.6114 12 6 1.8203 8.4626 -3.0627 13 7 2.2189 7.2928 -3.4934 14 14 0.6213 9.4728 -4.0782 15 1 1.3769 10.3496 -5.0086 16 1 -0.2560 8.5631 -4.8580 17 1 -0.2101 10.3088 -3.1755 18 6 3.8179 8.5742 0.0310 19 6 4.4014 7.7191 0.9371 20 6 4.0887 6.3674 0.9272 21 9 4.6723 5.5358 1.8178 22 6 1.5007 4.0080 0.0059 23 6 1.1925 2.6647 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.3299 1.3851 -0.0005 28 1 4.8859 3.7796 -0.0008 29 1 1.8642 6.3251 -1.6361 30 1 1.8914 6.9502 -4.3397 31 1 4.0686 9.6246 0.0413 32 1 5.1099 8.1013 1.6570 33 1 0.7100 4.7438 0.0108 34 1 0.1600 2.3479 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239498029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -24.694676 kcal Electronic energy + Delta-G solvation = -19359.691390 eV Core-core repulsion = 16261.661448 eV Total energy + Delta-G solvation = -3098.029941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.33231 -40.31165 -38.88581 -35.55412 -33.60700 -32.24524 -31.29417 -30.10302 -29.46146 -26.99607 -24.47865 -23.75878 -22.71574 -21.79469 -19.32936 -18.67094 -18.02177 -17.32229 -16.91407 -16.48936 -16.23959 -15.72326 -15.66881 -15.43271 -14.78410 -14.71335 -14.52249 -14.36562 -13.93207 -13.81633 -13.64486 -13.40702 -13.15111 -12.82871 -12.70807 -12.57357 -12.37450 -12.03390 -11.78829 -11.40862 -11.18954 -11.07635 -10.72489 -10.01256 -9.46834 -9.27935 -8.69973 -8.24425 -6.38910 -0.04912 0.37511 0.57365 0.79469 0.94929 1.40213 1.46666 1.47108 1.55179 2.19418 2.54674 2.74135 3.54541 3.77851 3.85032 3.91310 3.93920 4.27100 4.27566 4.29859 4.37073 4.50071 4.63031 4.84465 4.86570 4.96954 4.99288 5.12890 5.16517 5.20238 5.25897 5.50719 5.58527 5.73721 5.85810 5.88672 5.99783 6.22083 6.54557 6.84059 6.87366 8.26917 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004898 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.680123 B = 5714.779390 C = 7147.295790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.135 6.135 3 C -0.098 4.098 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.048 4.048 7 C -0.070 4.070 8 C -0.142 4.142 9 C 0.075 3.925 10 C -0.487 4.487 11 H 0.086 0.914 12 C 0.037 3.963 13 N -0.820 5.820 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.268 1.268 17 H -0.256 1.256 18 C -0.211 4.211 19 C -0.116 4.116 20 C -0.046 4.046 21 F -0.164 7.164 22 C -0.099 4.099 23 C -0.128 4.128 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.290 0.710 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -10.099 2.879 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.106 5.894 3 C -0.210 4.210 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.050 4.050 7 C -0.071 4.071 8 C -0.162 4.162 9 C 0.073 3.927 10 C -0.515 4.515 11 H 0.104 0.896 12 C -0.179 4.179 13 N -0.446 5.446 14 Si 0.802 3.198 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.179 1.179 18 C -0.231 4.231 19 C -0.134 4.134 20 C -0.066 4.066 21 F -0.143 7.143 22 C -0.119 4.119 23 C -0.151 4.151 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.236 -11.369 2.711 12.431 hybrid contribution -0.771 1.648 -0.377 1.858 sum -5.006 -9.721 2.334 11.181 Atomic orbital electron populations 1.23796 0.91747 1.08648 1.06469 1.85287 1.09840 1.01437 1.92865 1.21890 0.96377 0.97659 1.05056 1.20818 0.95233 0.95248 1.01227 1.21178 0.98796 0.92557 0.99178 1.19013 0.94261 0.91890 0.99860 1.18745 0.98613 0.92606 0.97120 1.21244 1.02335 0.93588 0.99006 1.17962 0.90029 0.92730 0.91989 1.19857 1.34741 0.96569 1.00356 0.89635 1.26779 0.96183 0.96141 0.98753 1.69876 1.35600 1.19093 1.19984 0.85199 0.78037 0.78643 0.77905 1.18667 1.19239 1.17941 1.21124 1.01739 0.99282 1.00955 1.20751 1.01177 0.91278 1.00220 1.17458 1.04471 0.88440 0.96198 1.91289 1.83717 1.72093 1.67247 1.21219 0.95197 0.96260 0.99217 1.21275 0.99374 0.91912 1.02575 0.88925 0.89155 0.85128 0.83835 0.86229 0.86594 0.89892 0.86345 0.85079 0.85719 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.15 113.37 1.04 -1.02 16 2 S -0.14 -3.12 22.56 -56.49 -1.27 -4.39 16 3 C -0.10 -2.92 6.12 22.68 0.14 -2.78 16 4 C -0.10 -3.31 9.78 22.38 0.22 -3.09 16 5 C -0.10 -3.72 8.84 22.46 0.20 -3.52 16 6 C -0.05 -2.02 5.32 -20.02 -0.11 -2.13 16 7 C -0.07 -3.33 5.47 -20.05 -0.11 -3.44 16 8 C -0.14 -7.30 8.13 22.94 0.19 -7.11 16 9 C 0.08 3.91 5.56 -21.32 -0.12 3.79 16 10 C -0.49 -24.75 9.04 23.43 0.21 -24.54 16 11 H 0.09 4.12 7.90 -2.91 -0.02 4.10 16 12 C 0.04 1.79 5.14 85.24 0.44 2.22 16 13 N -0.82 -41.30 10.96 21.82 0.24 -41.06 16 14 Si 0.98 36.08 29.59 68.60 2.03 38.11 16 15 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 16 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 17 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 18 C -0.21 -9.97 9.78 22.75 0.22 -9.74 16 19 C -0.12 -5.14 9.99 22.23 0.22 -4.92 16 20 C -0.05 -2.14 7.18 22.83 0.16 -1.98 16 21 F -0.16 -7.32 15.84 44.97 0.71 -6.61 16 22 C -0.10 -3.67 9.49 22.46 0.21 -3.46 16 23 C -0.13 -3.88 9.35 22.38 0.21 -3.67 16 24 H 0.09 1.27 7.74 -2.39 -0.02 1.26 16 25 H 0.09 1.30 7.74 -2.39 -0.02 1.28 16 26 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.12 4.59 7.75 -2.91 -0.02 4.56 16 29 H 0.12 6.17 6.16 -2.91 -0.02 6.15 16 30 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 31 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 33 H 0.12 4.51 8.04 -2.91 -0.02 4.49 16 34 H 0.15 3.50 5.86 -2.91 -0.02 3.48 16 Total: -1.00 -58.08 310.41 5.95 -52.13 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 1.12 Total: 27.22 kcal Atomic # 6 Polarization: -68.52 SS G_CDS: 3.13 Total: -65.39 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.24 Total: -41.06 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.71 Total: -6.61 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -1.27 Total: -4.39 kcal Total: -58.08 5.95 -52.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -58.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds