Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76204 * 103.00359 * 2 1 4 4 C 1.39270 * 119.92874 * 359.72824 * 3 2 1 5 5 C 1.37636 * 120.06301 * 180.27469 * 4 3 2 6 6 C 1.39812 * 119.93596 * 0.02562 * 5 4 3 7 7 C 1.47702 * 120.06773 * 179.97438 * 6 5 4 8 8 C 1.39194 * 120.27310 * 129.70494 * 7 6 5 9 9 C 1.38042 * 120.16683 * 179.74303 * 8 7 6 10 10 C 1.38882 * 120.72884 * 0.51060 * 9 8 7 11 11 C 1.37679 * 120.54377 * 359.77160 * 10 9 8 12 12 F 1.35099 * 120.09597 * 179.97438 * 11 10 9 13 13 C 1.41038 * 119.80523 * 359.96993 * 11 10 9 14 14 C 1.40752 * 120.34735 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00177 * 136.21289 * 14 13 11 16 16 C 1.40012 * 119.99876 * 316.20688 * 14 13 11 17 17 N 1.30834 * 119.99579 * 160.87095 * 16 14 13 18 18 Si 1.86802 * 120.00391 * 340.86986 * 16 14 13 19 19 H 1.48499 * 109.46686 * 95.26780 * 18 16 14 20 20 H 1.48493 * 109.46935 * 215.26959 * 18 16 14 21 21 H 1.48499 * 109.46711 * 335.27149 * 18 16 14 22 22 C 1.39817 * 119.86788 * 359.97438 * 6 5 4 23 23 C 1.37634 * 119.93301 * 359.97438 * 22 6 5 24 24 H 1.08997 * 109.47452 * 59.99474 * 1 2 3 25 25 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47242 * 299.99894 * 1 2 3 27 27 H 1.08000 * 119.96712 * 0.27719 * 4 3 2 28 28 H 1.07998 * 120.03441 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.91491 * 359.97365 * 8 7 6 30 30 H 1.07997 * 119.63656 * 180.23647 * 9 8 7 31 31 H 1.07996 * 119.72832 * 179.73795 * 10 9 8 32 32 H 0.97001 * 119.99265 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.03088 * 180.02562 * 22 6 5 34 34 H 1.08005 * 119.96877 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1907 2.6655 -0.0057 5 6 1.4973 4.0072 -0.0115 6 6 2.8339 4.4176 -0.0121 7 6 3.1662 5.8567 -0.0188 8 6 4.0713 6.3722 0.9045 9 6 4.3843 7.7166 0.8929 10 6 3.7967 8.5741 -0.0281 11 6 2.8931 8.0970 -0.9509 12 9 2.3265 8.9393 -1.8423 13 6 2.5609 6.7263 -0.9629 14 6 1.6390 6.2263 -1.9015 15 1 1.8437 5.3008 -2.4193 16 6 0.4565 6.9285 -2.1640 17 7 -0.2116 6.6962 -3.2646 18 14 -0.1673 8.1969 -0.9427 19 1 0.2996 9.5467 -1.3492 20 1 -1.6519 8.1730 -0.9191 21 1 0.3546 7.8793 0.4107 22 6 3.8553 3.4628 -0.0063 23 6 3.5426 2.1225 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.1585 2.3479 -0.0056 28 1 0.7062 4.7425 -0.0155 29 1 4.5328 5.7179 1.6294 30 1 5.0907 8.1067 1.6107 31 1 4.0501 9.6238 -0.0200 32 1 -1.0307 7.1830 -3.4466 33 1 4.8887 3.7769 -0.0063 34 1 4.3312 1.3845 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239498980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -3.550985 kcal Electronic energy + Delta-G solvation = -19858.219198 eV Core-core repulsion = 16761.106116 eV Total energy + Delta-G solvation = -3097.113082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.73395 -38.90305 -37.13506 -33.73695 -31.94763 -30.91582 -30.11237 -28.93201 -28.09101 -25.41355 -22.82000 -22.08797 -20.90990 -20.16573 -17.90731 -17.32806 -16.47550 -15.69341 -15.19688 -14.98173 -14.48578 -14.41005 -14.18094 -14.08684 -13.73685 -13.61427 -13.06671 -12.93762 -12.58014 -12.41563 -12.10649 -11.82792 -11.63037 -11.40381 -11.10702 -10.81205 -10.68481 -10.38959 -10.23376 -10.00386 -9.69680 -9.30066 -9.13222 -8.48652 -7.85738 -7.61671 -6.99787 -6.94694 -4.59073 1.48604 1.74036 1.93511 2.34854 2.39806 2.60200 3.12240 3.15743 3.22197 3.94984 4.18590 4.39000 4.99486 5.06855 5.10055 5.29868 5.34754 5.44855 5.63809 5.66064 5.77348 5.90292 6.01977 6.04573 6.20629 6.30516 6.53259 6.58763 6.72713 6.77876 7.02746 7.10411 7.16342 7.29057 7.34479 7.52389 7.60254 7.87144 8.21854 8.43455 8.62800 10.00430 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.005804 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.395238 B = 4823.370327 C = 5897.377757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.144 6.144 3 C -0.102 4.102 4 C -0.134 4.134 5 C -0.067 4.067 6 C 0.010 3.990 7 C -0.139 4.139 8 C -0.075 4.075 9 C -0.210 4.210 10 C -0.115 4.115 11 C -0.016 4.016 12 F -0.146 7.146 13 C 0.082 3.918 14 C -0.451 4.451 15 H 0.099 0.901 16 C 0.093 3.907 17 N -0.797 5.797 18 Si 0.898 3.102 19 H -0.257 1.257 20 H -0.290 1.290 21 H -0.250 1.250 22 C -0.109 4.109 23 C -0.102 4.102 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.286 0.714 33 H 0.123 0.877 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 -6.697 6.834 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.096 5.904 3 C -0.214 4.214 4 C -0.157 4.157 5 C -0.087 4.087 6 C 0.008 3.992 7 C -0.140 4.140 8 C -0.093 4.093 9 C -0.230 4.230 10 C -0.134 4.134 11 C -0.036 4.036 12 F -0.125 7.125 13 C 0.078 3.922 14 C -0.479 4.479 15 H 0.117 0.883 16 C -0.128 4.128 17 N -0.420 5.420 18 Si 0.723 3.277 19 H -0.182 1.182 20 H -0.217 1.217 21 H -0.174 1.174 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.917 -7.721 6.580 10.324 hybrid contribution -1.337 1.911 0.092 2.334 sum 0.580 -5.810 6.672 8.866 Atomic orbital electron populations 1.23593 0.94990 1.06420 1.05780 1.85115 1.06369 1.05225 1.93690 1.21552 0.96690 0.95046 1.08096 1.21012 0.97531 0.93280 1.03897 1.21254 0.96766 0.94517 0.96125 1.18733 0.92427 0.92177 0.95842 1.18569 1.04976 0.91875 0.98623 1.20789 0.96247 0.94842 0.97467 1.20188 1.06236 0.93457 1.03071 1.20721 0.97535 0.99099 0.96018 1.17951 1.01631 0.89545 0.94445 1.91233 1.83434 1.70360 1.67436 1.17648 0.93674 0.88910 0.91929 1.19131 1.01812 1.09080 1.17840 0.88274 1.26058 0.96514 0.95522 0.94671 1.69693 1.14707 1.36544 1.21098 0.86624 0.76758 0.82166 0.82144 1.18192 1.21688 1.17375 1.21168 0.98941 0.91733 1.01037 1.20479 0.93747 0.95805 1.02512 0.89719 0.87963 0.89927 0.86564 0.85088 0.87729 0.87580 0.87423 0.90374 0.85948 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.14 101.05 0.92 -0.57 16 2 S -0.14 -1.99 22.56 -107.50 -2.43 -4.41 16 3 C -0.10 -1.68 6.13 -38.82 -0.24 -1.92 16 4 C -0.13 -2.33 9.35 -39.42 -0.37 -2.70 16 5 C -0.07 -1.32 8.36 -39.21 -0.33 -1.65 16 6 C 0.01 0.21 5.03 -104.85 -0.53 -0.32 16 7 C -0.14 -3.01 5.52 -104.27 -0.58 -3.59 16 8 C -0.08 -1.45 9.49 -39.30 -0.37 -1.82 16 9 C -0.21 -3.97 10.02 -39.41 -0.40 -4.37 16 10 C -0.11 -2.37 9.99 -39.55 -0.40 -2.76 16 11 C -0.02 -0.37 5.65 -38.73 -0.22 -0.59 16 12 F -0.15 -3.64 12.92 2.25 0.03 -3.61 16 13 C 0.08 2.00 4.68 -106.48 -0.50 1.50 16 14 C -0.45 -11.71 6.89 -37.97 -0.26 -11.97 16 15 H 0.10 2.76 7.77 -52.49 -0.41 2.35 16 16 C 0.09 2.39 4.98 -17.31 -0.09 2.31 16 17 N -0.80 -20.99 13.93 55.55 0.77 -20.21 16 18 Si 0.90 20.88 24.72 -169.99 -4.20 16.67 16 19 H -0.26 -6.05 6.30 56.52 0.36 -5.70 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.25 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.11 -1.91 9.51 -39.21 -0.37 -2.29 16 23 C -0.10 -1.67 9.77 -39.42 -0.39 -2.06 16 24 H 0.08 0.93 7.73 -51.93 -0.40 0.53 16 25 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.08 0.84 7.75 -51.92 -0.40 0.44 16 27 H 0.12 1.77 5.86 -52.49 -0.31 1.46 16 28 H 0.13 2.74 7.30 -52.49 -0.38 2.35 16 29 H 0.10 1.73 8.04 -52.49 -0.42 1.31 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 33 H 0.12 1.93 8.04 -52.48 -0.42 1.50 16 34 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -27.04 302.27 -8.99 -36.02 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.62 Total: 3.80 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -4.10 Total: -32.81 kcal Atomic # 7 Polarization: -20.99 SS G_CDS: 0.77 Total: -20.21 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.03 Total: -3.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.20 Total: 16.67 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.43 Total: -4.41 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.04 -8.99 -36.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.472 kcal (2) G-P(sol) polarization free energy of solvation -27.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds