Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76204 * 103.00359 * 2 1 4 4 C 1.39270 * 119.92874 * 359.72824 * 3 2 1 5 5 C 1.37636 * 120.06301 * 180.27469 * 4 3 2 6 6 C 1.39812 * 119.93596 * 0.02562 * 5 4 3 7 7 C 1.47702 * 120.06773 * 179.97438 * 6 5 4 8 8 C 1.39194 * 120.27310 * 129.70494 * 7 6 5 9 9 C 1.38042 * 120.16683 * 179.74303 * 8 7 6 10 10 C 1.38882 * 120.72884 * 0.51060 * 9 8 7 11 11 C 1.37679 * 120.54377 * 359.77160 * 10 9 8 12 12 F 1.35099 * 120.09597 * 179.97438 * 11 10 9 13 13 C 1.41038 * 119.80523 * 359.96993 * 11 10 9 14 14 C 1.40752 * 120.34735 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00177 * 136.21289 * 14 13 11 16 16 C 1.40012 * 119.99876 * 316.20688 * 14 13 11 17 17 N 1.30834 * 119.99579 * 160.87095 * 16 14 13 18 18 Si 1.86802 * 120.00391 * 340.86986 * 16 14 13 19 19 H 1.48499 * 109.46686 * 95.26780 * 18 16 14 20 20 H 1.48493 * 109.46935 * 215.26959 * 18 16 14 21 21 H 1.48499 * 109.46711 * 335.27149 * 18 16 14 22 22 C 1.39817 * 119.86788 * 359.97438 * 6 5 4 23 23 C 1.37634 * 119.93301 * 359.97438 * 22 6 5 24 24 H 1.08997 * 109.47452 * 59.99474 * 1 2 3 25 25 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47242 * 299.99894 * 1 2 3 27 27 H 1.08000 * 119.96712 * 0.27719 * 4 3 2 28 28 H 1.07998 * 120.03441 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.91491 * 359.97365 * 8 7 6 30 30 H 1.07997 * 119.63656 * 180.23647 * 9 8 7 31 31 H 1.07996 * 119.72832 * 179.73795 * 10 9 8 32 32 H 0.97001 * 119.99265 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.03088 * 180.02562 * 22 6 5 34 34 H 1.08005 * 119.96877 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1907 2.6655 -0.0057 5 6 1.4973 4.0072 -0.0115 6 6 2.8339 4.4176 -0.0121 7 6 3.1662 5.8567 -0.0188 8 6 4.0713 6.3722 0.9045 9 6 4.3843 7.7166 0.8929 10 6 3.7967 8.5741 -0.0281 11 6 2.8931 8.0970 -0.9509 12 9 2.3265 8.9393 -1.8423 13 6 2.5609 6.7263 -0.9629 14 6 1.6390 6.2263 -1.9015 15 1 1.8437 5.3008 -2.4193 16 6 0.4565 6.9285 -2.1640 17 7 -0.2116 6.6962 -3.2646 18 14 -0.1673 8.1969 -0.9427 19 1 0.2996 9.5467 -1.3492 20 1 -1.6519 8.1730 -0.9191 21 1 0.3546 7.8793 0.4107 22 6 3.8553 3.4628 -0.0063 23 6 3.5426 2.1225 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.1585 2.3479 -0.0056 28 1 0.7062 4.7425 -0.0155 29 1 4.5328 5.7179 1.6294 30 1 5.0907 8.1067 1.6107 31 1 4.0501 9.6238 -0.0200 32 1 -1.0307 7.1830 -3.4466 33 1 4.8887 3.7769 -0.0063 34 1 4.3312 1.3845 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239498980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -16.056396 kcal Electronic energy + Delta-G solvation = -19858.761473 eV Core-core repulsion = 16761.106116 eV Total energy + Delta-G solvation = -3097.655357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.59322 -40.39912 -38.69957 -35.55785 -33.48018 -32.38047 -31.70569 -30.09863 -29.41223 -27.17642 -24.33519 -23.54264 -22.56892 -21.72826 -19.74819 -18.64748 -18.01766 -17.48564 -16.87325 -16.39199 -16.24306 -15.88347 -15.78661 -15.50114 -14.95526 -14.85752 -14.69050 -14.35114 -14.12725 -13.73213 -13.56273 -13.42019 -13.19729 -12.98557 -12.73506 -12.44600 -12.17369 -12.01994 -11.93810 -11.44778 -11.18594 -11.10279 -10.58183 -9.87356 -9.45119 -9.32525 -8.88129 -8.19480 -6.49734 0.01102 0.54322 0.62357 0.65245 0.80615 1.24387 1.28670 1.35046 1.50252 2.08061 2.54408 2.80399 3.24179 3.78324 3.97884 4.05148 4.06642 4.25007 4.27609 4.30030 4.51497 4.52322 4.59837 4.69910 4.84075 4.87310 4.90917 5.16495 5.20988 5.32862 5.35680 5.54874 5.58322 5.65485 5.76090 5.95306 6.05641 6.14458 6.30188 6.64285 6.75499 8.18923 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.005804 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.395238 B = 4823.370327 C = 5897.377757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.136 6.136 3 C -0.104 4.104 4 C -0.141 4.141 5 C -0.085 4.085 6 C -0.022 4.022 7 C -0.132 4.132 8 C -0.079 4.079 9 C -0.180 4.180 10 C -0.121 4.121 11 C -0.043 4.043 12 F -0.160 7.160 13 C 0.056 3.944 14 C -0.474 4.474 15 H 0.061 0.939 16 C 0.062 3.938 17 N -0.847 5.847 18 Si 0.939 3.061 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.255 1.255 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.136 0.864 32 H 0.289 0.711 33 H 0.143 0.857 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -7.687 9.506 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.104 5.896 3 C -0.217 4.217 4 C -0.164 4.164 5 C -0.105 4.105 6 C -0.024 4.024 7 C -0.134 4.134 8 C -0.097 4.097 9 C -0.198 4.198 10 C -0.140 4.140 11 C -0.063 4.063 12 F -0.140 7.140 13 C 0.053 3.947 14 C -0.504 4.504 15 H 0.079 0.921 16 C -0.153 4.153 17 N -0.474 5.474 18 Si 0.763 3.237 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.179 1.179 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.109 0.891 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.800 -8.720 9.266 13.280 hybrid contribution -1.693 2.048 -0.536 2.711 sum 2.107 -6.672 8.730 11.188 Atomic orbital electron populations 1.23744 0.92508 1.08383 1.06036 1.85089 1.09122 1.02246 1.93113 1.21906 0.96723 0.96907 1.06117 1.21171 0.98872 0.92573 1.03782 1.21173 0.96440 0.95260 0.97603 1.18823 0.93162 0.92048 0.98386 1.18974 1.03950 0.92571 0.97861 1.21249 0.95471 0.95832 0.97191 1.20822 1.04448 0.92855 1.01716 1.21128 0.96452 1.01073 0.95376 1.18376 1.03029 0.89404 0.95518 1.91187 1.83930 1.70636 1.68206 1.17864 0.94164 0.90010 0.92647 1.18853 1.03324 1.08315 1.19910 0.92119 1.26508 0.96518 0.96739 0.95492 1.69730 1.16018 1.38988 1.22617 0.85991 0.77024 0.80265 0.80401 1.18790 1.20299 1.17860 1.21359 0.99210 0.91829 0.99894 1.20831 0.94466 0.95935 1.01483 0.90055 0.85125 0.89127 0.84992 0.87597 0.84079 0.82933 0.84621 0.90032 0.83910 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.14 113.37 1.04 -1.59 16 2 S -0.14 -3.43 22.56 -56.49 -1.27 -4.71 16 3 C -0.10 -3.30 6.13 22.76 0.14 -3.16 16 4 C -0.14 -4.89 9.35 22.38 0.21 -4.68 16 5 C -0.08 -3.47 8.36 22.51 0.19 -3.28 16 6 C -0.02 -0.88 5.03 -20.01 -0.10 -0.98 16 7 C -0.13 -5.65 5.52 -19.64 -0.11 -5.76 16 8 C -0.08 -2.78 9.49 22.45 0.21 -2.57 16 9 C -0.18 -5.95 10.02 22.38 0.22 -5.72 16 10 C -0.12 -4.69 9.99 22.29 0.22 -4.47 16 11 C -0.04 -2.07 5.65 22.82 0.13 -1.94 16 12 F -0.16 -8.20 12.92 44.97 0.58 -7.62 16 13 C 0.06 2.80 4.68 -21.07 -0.10 2.70 16 14 C -0.47 -26.27 6.89 23.32 0.16 -26.11 16 15 H 0.06 3.70 7.77 -2.91 -0.02 3.67 16 16 C 0.06 3.40 4.98 85.27 0.42 3.83 16 17 N -0.85 -47.67 13.93 21.84 0.30 -47.37 16 18 Si 0.94 44.67 24.72 68.60 1.70 46.36 16 19 H -0.26 -12.55 6.30 99.48 0.63 -11.93 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 22 C -0.10 -3.45 9.51 22.51 0.21 -3.23 16 23 C -0.10 -3.18 9.77 22.37 0.22 -2.96 16 24 H 0.08 1.65 7.73 -2.39 -0.02 1.63 16 25 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.62 7.75 -2.39 -0.02 1.60 16 27 H 0.13 4.00 5.86 -2.91 -0.02 3.98 16 28 H 0.11 4.77 7.30 -2.91 -0.02 4.74 16 29 H 0.14 3.95 8.04 -2.91 -0.02 3.93 16 30 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 33 H 0.14 4.06 8.04 -2.91 -0.02 4.04 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -62.35 302.27 5.42 -56.93 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.04 Total: 16.33 kcal Atomic # 6 Polarization: -63.00 SS G_CDS: 3.07 Total: -59.92 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.30 Total: -47.37 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.58 Total: -7.62 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.70 Total: 46.36 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.27 Total: -4.71 kcal Total: -62.35 5.42 -56.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.877 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds