Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99908 * 2 1 4 4 C 1.39084 * 119.96025 * 180.02562 * 3 2 1 5 5 C 1.37830 * 120.03934 * 180.02562 * 4 3 2 6 6 C 1.39424 * 119.95998 * 359.97438 * 5 4 3 7 7 C 1.48345 * 120.03838 * 179.97438 * 6 5 4 8 8 C 1.39727 * 119.99277 * 0.02562 * 7 6 5 9 9 C 1.38613 * 120.35366 * 179.97438 * 8 7 6 10 10 F 1.35088 * 119.83992 * 180.02562 * 9 8 7 11 11 C 1.37946 * 120.32382 * 359.97438 * 9 8 7 12 12 C 1.40725 * 119.97484 * 0.02562 * 11 9 8 13 13 C 1.41432 * 120.16921 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99779 * 204.46672 * 13 12 11 15 15 C 1.39913 * 120.00317 * 24.46974 * 13 12 11 16 16 N 1.30836 * 120.00224 * 17.87340 * 15 13 12 17 17 Si 1.86805 * 120.00004 * 197.88027 * 15 13 12 18 18 H 1.48501 * 109.47043 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47325 * 119.99789 * 17 15 13 20 20 H 1.48503 * 109.46665 * 239.99635 * 17 15 13 21 21 C 1.38773 * 119.98789 * 180.02562 * 7 6 5 22 22 C 1.39426 * 119.91828 * 0.25904 * 6 5 4 23 23 C 1.37822 * 119.96054 * 359.50749 * 22 6 5 24 24 H 1.08993 * 109.47665 * 60.00109 * 1 2 3 25 25 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47142 * 299.99362 * 1 2 3 27 27 H 1.07997 * 119.98338 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.01997 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.82682 * 0.02562 * 8 7 6 30 30 H 1.08003 * 120.01220 * 179.72509 * 11 9 8 31 31 H 0.97000 * 119.99944 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.16156 * 359.97438 * 21 7 6 33 33 H 1.07995 * 120.01423 * 179.74810 * 22 6 5 34 34 H 1.08004 * 119.97914 * 180.20891 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5407 2.1226 -0.0005 5 6 3.8526 3.4652 0.0000 6 6 2.8335 4.4167 0.0005 7 6 3.1672 5.8621 0.0017 8 6 4.5035 6.2705 0.0017 9 6 4.8238 7.6191 0.0022 10 9 6.1192 8.0023 0.0017 11 6 3.8262 8.5719 0.0022 12 6 2.4758 8.1760 0.0022 13 6 1.4497 9.1493 0.0028 14 1 0.4721 8.9032 0.3902 15 6 1.7011 10.4311 -0.4986 16 7 2.7347 10.6396 -1.2732 17 14 0.5610 11.8450 -0.0619 18 1 -0.5252 11.3503 0.8216 19 1 1.3303 12.9017 0.6429 20 1 -0.0287 12.4069 -1.3036 21 6 2.1521 6.8084 0.0028 22 6 1.5005 4.0081 0.0060 23 6 1.1924 2.6648 0.0006 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 4.3298 1.3853 -0.0005 28 1 4.8856 3.7799 -0.0008 29 1 5.2910 5.5315 0.0004 30 1 4.0815 9.6213 0.0071 31 1 2.9087 11.5282 -1.6210 32 1 1.1185 6.4953 0.0023 33 1 0.7100 4.7438 0.0105 34 1 0.1599 2.3479 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239500064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = -14.764459 kcal Electronic energy + Delta-G solvation = -18950.816283 eV Core-core repulsion = 15853.216949 eV Total energy + Delta-G solvation = -3097.599335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.72128 -39.11975 -37.15225 -34.01325 -31.74374 -31.15795 -29.79392 -28.95984 -27.89506 -25.62848 -23.10993 -22.57094 -20.49642 -20.34621 -17.92725 -17.45145 -16.08452 -15.45579 -15.31635 -15.15412 -14.73213 -14.39448 -14.20701 -14.09617 -13.95851 -13.68958 -13.32781 -12.91005 -12.82549 -12.50916 -12.09242 -11.75393 -11.57627 -11.35843 -11.16428 -11.05697 -10.63795 -10.53124 -10.26768 -10.07748 -9.73390 -9.64876 -9.20647 -8.79801 -7.84252 -7.57410 -6.97998 -6.85539 -4.59395 1.15542 1.51125 1.60522 2.37608 2.55922 2.75685 2.99140 3.03317 3.05689 3.80283 4.01282 4.48771 4.87948 4.89495 4.96781 5.06985 5.21535 5.42481 5.44562 5.59036 5.63871 5.75499 5.91132 6.12196 6.27342 6.39667 6.46808 6.55221 6.67541 6.79392 6.92095 7.06978 7.13065 7.39347 7.54009 7.64907 7.76694 8.04976 8.38619 8.65578 8.67358 9.99813 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.003751 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.502251 B = 7462.092974 C = 8656.747755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.136 6.136 3 C -0.101 4.101 4 C -0.097 4.097 5 C -0.101 4.101 6 C -0.013 4.013 7 C -0.015 4.015 8 C -0.261 4.261 9 C 0.106 3.894 10 F -0.166 7.166 11 C -0.194 4.194 12 C 0.126 3.874 13 C -0.456 4.456 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.208 4.208 22 C -0.098 4.098 23 C -0.130 4.130 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.284 0.716 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -12.337 1.704 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.104 5.896 3 C -0.213 4.213 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.015 4.015 7 C -0.015 4.015 8 C -0.281 4.281 9 C 0.087 3.913 10 F -0.145 7.145 11 C -0.214 4.214 12 C 0.123 3.877 13 C -0.484 4.484 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.409 5.409 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.228 4.228 22 C -0.117 4.117 23 C -0.153 4.153 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.866 -13.201 1.554 13.598 hybrid contribution -1.019 1.906 0.020 2.161 sum -3.885 -11.295 1.574 12.048 Atomic orbital electron populations 1.23618 0.94938 1.06683 1.05714 1.85271 1.06351 1.04537 1.93421 1.21571 0.96732 0.95505 1.07479 1.20608 0.93963 0.95927 1.01544 1.21237 0.99679 0.91655 0.99517 1.19101 0.92660 0.93135 0.96631 1.18042 0.92881 0.89813 1.00803 1.20288 0.95479 0.93285 1.19049 1.17549 0.77160 0.93224 1.03360 1.91340 1.36316 1.92265 1.94537 1.21383 0.91970 0.98864 1.09169 1.17293 0.91839 0.91256 0.87284 1.19629 0.98445 0.94803 1.35537 0.89753 1.25979 0.95714 1.00329 0.92419 1.69819 1.25521 1.24109 1.21402 0.86208 0.80647 0.80229 0.79418 1.18197 1.19514 1.19809 1.21145 0.96753 0.92591 1.12288 1.21225 0.96477 0.94966 0.99075 1.21020 0.97749 0.93090 1.03419 0.89787 0.87749 0.89804 0.85874 0.85166 0.87710 0.85204 0.90473 0.87796 0.85035 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.14 101.05 0.92 -0.25 16 2 S -0.14 -1.60 22.56 -107.50 -2.43 -4.03 16 3 C -0.10 -1.43 6.12 -38.95 -0.24 -1.67 16 4 C -0.10 -1.42 9.78 -39.42 -0.39 -1.81 16 5 C -0.10 -1.65 9.42 -39.29 -0.37 -2.02 16 6 C -0.01 -0.24 5.88 -104.85 -0.62 -0.86 16 7 C -0.02 -0.32 5.87 -104.98 -0.62 -0.94 16 8 C -0.26 -5.77 9.41 -38.89 -0.37 -6.14 16 9 C 0.11 2.56 7.28 -39.55 -0.29 2.27 16 10 F -0.17 -3.86 17.26 2.25 0.04 -3.82 16 11 C -0.19 -4.97 8.66 -38.75 -0.34 -5.30 16 12 C 0.13 3.19 5.57 -106.87 -0.60 2.60 16 13 C -0.46 -11.36 9.05 -37.74 -0.34 -11.70 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 15 C 0.07 1.79 5.13 -17.35 -0.09 1.70 16 16 N -0.78 -19.54 10.96 55.55 0.61 -18.93 16 17 Si 0.91 17.70 29.60 -169.99 -5.03 12.67 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 21 C -0.21 -4.77 9.16 -38.52 -0.35 -5.12 16 22 C -0.10 -1.60 9.41 -39.29 -0.37 -1.97 16 23 C -0.13 -1.84 9.35 -39.42 -0.37 -2.21 16 24 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 25 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.08 0.66 7.74 -51.92 -0.40 0.26 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 1.99 6.18 -52.49 -0.32 1.67 16 29 H 0.10 2.07 6.17 -52.49 -0.32 1.74 16 30 H 0.13 3.46 6.16 -52.48 -0.32 3.14 16 31 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 32 H 0.10 2.17 6.18 -52.49 -0.32 1.84 16 33 H 0.13 2.06 6.18 -52.49 -0.32 1.73 16 34 H 0.12 1.39 5.86 -52.48 -0.31 1.08 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -26.62 305.54 -9.74 -36.35 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.13 Total: 6.59 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -4.41 Total: -33.44 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.61 Total: -18.93 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.43 Total: -4.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.62 -9.74 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239500064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.590 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds