Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99908 * 2 1 4 4 C 1.39084 * 119.96025 * 180.02562 * 3 2 1 5 5 C 1.37830 * 120.03934 * 180.02562 * 4 3 2 6 6 C 1.39424 * 119.95998 * 359.97438 * 5 4 3 7 7 C 1.48345 * 120.03838 * 179.97438 * 6 5 4 8 8 C 1.39727 * 119.99277 * 0.02562 * 7 6 5 9 9 C 1.38613 * 120.35366 * 179.97438 * 8 7 6 10 10 F 1.35088 * 119.83992 * 180.02562 * 9 8 7 11 11 C 1.37946 * 120.32382 * 359.97438 * 9 8 7 12 12 C 1.40725 * 119.97484 * 0.02562 * 11 9 8 13 13 C 1.41432 * 120.16921 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99779 * 204.46672 * 13 12 11 15 15 C 1.39913 * 120.00317 * 24.46974 * 13 12 11 16 16 N 1.30836 * 120.00224 * 17.87340 * 15 13 12 17 17 Si 1.86805 * 120.00004 * 197.88027 * 15 13 12 18 18 H 1.48501 * 109.47043 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47325 * 119.99789 * 17 15 13 20 20 H 1.48503 * 109.46665 * 239.99635 * 17 15 13 21 21 C 1.38773 * 119.98789 * 180.02562 * 7 6 5 22 22 C 1.39426 * 119.91828 * 0.25904 * 6 5 4 23 23 C 1.37822 * 119.96054 * 359.50749 * 22 6 5 24 24 H 1.08993 * 109.47665 * 60.00109 * 1 2 3 25 25 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47142 * 299.99362 * 1 2 3 27 27 H 1.07997 * 119.98338 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.01997 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.82682 * 0.02562 * 8 7 6 30 30 H 1.08003 * 120.01220 * 179.72509 * 11 9 8 31 31 H 0.97000 * 119.99944 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.16156 * 359.97438 * 21 7 6 33 33 H 1.07995 * 120.01423 * 179.74810 * 22 6 5 34 34 H 1.08004 * 119.97914 * 180.20891 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5407 2.1226 -0.0005 5 6 3.8526 3.4652 0.0000 6 6 2.8335 4.4167 0.0005 7 6 3.1672 5.8621 0.0017 8 6 4.5035 6.2705 0.0017 9 6 4.8238 7.6191 0.0022 10 9 6.1192 8.0023 0.0017 11 6 3.8262 8.5719 0.0022 12 6 2.4758 8.1760 0.0022 13 6 1.4497 9.1493 0.0028 14 1 0.4721 8.9032 0.3902 15 6 1.7011 10.4311 -0.4986 16 7 2.7347 10.6396 -1.2732 17 14 0.5610 11.8450 -0.0619 18 1 -0.5252 11.3503 0.8216 19 1 1.3303 12.9017 0.6429 20 1 -0.0287 12.4069 -1.3036 21 6 2.1521 6.8084 0.0028 22 6 1.5005 4.0081 0.0060 23 6 1.1924 2.6648 0.0006 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 4.3298 1.3853 -0.0005 28 1 4.8856 3.7799 -0.0008 29 1 5.2910 5.5315 0.0004 30 1 4.0815 9.6213 0.0071 31 1 2.9087 11.5282 -1.6210 32 1 1.1185 6.4953 0.0023 33 1 0.7100 4.7438 0.0105 34 1 0.1599 2.3479 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239500064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = -25.189123 kcal Electronic energy + Delta-G solvation = -18951.268331 eV Core-core repulsion = 15853.216949 eV Total energy + Delta-G solvation = -3098.051382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.60942 -40.47413 -38.79661 -35.75804 -33.23610 -32.39095 -31.47633 -29.88864 -29.31762 -27.43995 -24.56944 -23.93721 -22.12271 -21.97245 -19.48182 -18.74650 -17.81192 -16.94665 -16.88857 -16.63592 -16.29980 -16.22115 -15.66902 -15.37943 -14.80244 -14.78130 -14.72621 -14.37358 -13.99666 -13.90679 -13.44242 -13.39660 -13.04418 -12.88218 -12.67457 -12.50728 -12.21886 -12.07797 -11.75593 -11.52037 -11.22082 -11.14971 -10.77320 -9.97803 -9.47942 -9.26408 -8.73169 -8.14057 -6.48692 -0.19850 0.41953 0.60474 0.75446 1.10602 1.39070 1.49138 1.49713 1.55135 2.17520 2.50433 2.89781 3.57826 3.59074 3.84041 3.95891 4.03172 4.29539 4.30892 4.31542 4.47618 4.50626 4.61081 4.80199 4.87467 4.88935 5.00247 5.06907 5.19367 5.25918 5.28150 5.46944 5.62964 5.69290 5.89721 5.91703 5.94587 6.22893 6.52482 6.80373 6.82212 8.23894 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.003751 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.502251 B = 7462.092974 C = 8656.747755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.140 6.140 3 C -0.097 4.097 4 C -0.103 4.103 5 C -0.101 4.101 6 C -0.050 4.050 7 C -0.004 4.004 8 C -0.266 4.266 9 C 0.095 3.905 10 F -0.165 7.165 11 C -0.226 4.226 12 C 0.103 3.897 13 C -0.486 4.486 14 H 0.090 0.910 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.986 3.014 18 H -0.252 1.252 19 H -0.267 1.267 20 H -0.265 1.265 21 C -0.222 4.222 22 C -0.100 4.100 23 C -0.129 4.129 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.291 0.709 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -14.624 1.942 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.102 5.898 3 C -0.210 4.210 4 C -0.126 4.126 5 C -0.120 4.120 6 C -0.052 4.052 7 C -0.004 4.004 8 C -0.285 4.285 9 C 0.076 3.924 10 F -0.144 7.144 11 C -0.247 4.247 12 C 0.101 3.899 13 C -0.514 4.514 14 H 0.108 0.892 15 C -0.182 4.182 16 N -0.445 5.445 17 Si 0.806 3.194 18 H -0.175 1.175 19 H -0.192 1.192 20 H -0.189 1.189 21 C -0.241 4.241 22 C -0.120 4.120 23 C -0.153 4.153 24 H 0.110 0.890 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.545 -15.521 1.791 16.272 hybrid contribution -0.517 2.312 -0.067 2.370 sum -5.062 -13.208 1.724 14.250 Atomic orbital electron populations 1.23791 0.91800 1.08569 1.06518 1.85370 1.09806 1.01913 1.92724 1.21941 0.96651 0.97400 1.04959 1.20859 0.95041 0.95563 1.01157 1.21329 0.99509 0.92214 0.98993 1.19012 0.94238 0.91443 1.00512 1.18360 0.92189 0.91746 0.98151 1.20579 0.96699 0.92771 1.18482 1.17749 0.76974 0.94016 1.03633 1.91326 1.36117 1.92402 1.94567 1.21285 0.92913 0.98239 1.12213 1.17631 0.91902 0.92682 0.87710 1.19938 0.98772 0.95987 1.36719 0.89162 1.26886 0.97186 1.02547 0.91593 1.69887 1.27234 1.25106 1.22256 0.85089 0.78473 0.76475 0.79314 1.17477 1.19178 1.18941 1.21354 0.98046 0.92024 1.12686 1.21327 0.95707 0.96222 0.98712 1.21295 0.99338 0.92056 1.02584 0.89011 0.85371 0.88947 0.83812 0.84703 0.85355 0.87233 0.89812 0.86300 0.84917 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.14 113.37 1.04 -0.68 16 2 S -0.14 -2.79 22.56 -56.49 -1.27 -4.07 16 3 C -0.10 -2.48 6.12 22.68 0.14 -2.34 16 4 C -0.10 -2.78 9.78 22.38 0.22 -2.56 16 5 C -0.10 -3.15 9.42 22.46 0.21 -2.94 16 6 C -0.05 -1.78 5.88 -20.01 -0.12 -1.90 16 7 C 0.00 -0.18 5.87 -20.10 -0.12 -0.30 16 8 C -0.27 -11.91 9.41 22.72 0.21 -11.69 16 9 C 0.10 4.77 7.28 22.29 0.16 4.93 16 10 F -0.17 -7.94 17.26 44.97 0.78 -7.17 16 11 C -0.23 -12.22 8.66 22.81 0.20 -12.03 16 12 C 0.10 5.46 5.57 -21.32 -0.12 5.34 16 13 C -0.49 -25.01 9.05 23.46 0.21 -24.80 16 14 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 15 C 0.03 1.66 5.13 85.25 0.44 2.10 16 16 N -0.82 -42.41 10.96 21.82 0.24 -42.17 16 17 Si 0.99 36.62 29.60 68.60 2.03 38.65 16 18 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 C -0.22 -10.40 9.16 22.96 0.21 -10.19 16 22 C -0.10 -3.14 9.41 22.46 0.21 -2.92 16 23 C -0.13 -3.32 9.35 22.38 0.21 -3.11 16 24 H 0.09 1.06 7.74 -2.39 -0.02 1.04 16 25 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.05 7.74 -2.39 -0.02 1.04 16 27 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.14 3.96 6.18 -2.91 -0.02 3.94 16 29 H 0.13 5.01 6.17 -2.91 -0.02 5.00 16 30 H 0.11 6.24 6.16 -2.91 -0.02 6.23 16 31 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 32 H 0.12 5.04 6.18 -2.91 -0.02 5.02 16 33 H 0.13 4.02 6.18 -2.91 -0.02 4.00 16 34 H 0.15 2.88 5.86 -2.91 -0.02 2.86 16 Total: -1.00 -59.34 305.54 6.02 -53.32 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.14 Total: 24.53 kcal Atomic # 6 Polarization: -66.20 SS G_CDS: 3.11 Total: -63.10 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.24 Total: -42.17 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.78 Total: -7.17 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -1.27 Total: -4.07 kcal Total: -59.34 6.02 -53.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239500064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.130 kcal (2) G-P(sol) polarization free energy of solvation -59.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds