Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38356 * 119.87005 * 2 1 4 4 C 1.37989 * 120.15972 * 179.72189 * 3 2 1 5 5 C 1.39402 * 119.87888 * 0.26560 * 4 3 2 6 6 C 1.48275 * 120.13003 * 179.97438 * 5 4 3 7 7 C 1.39296 * 120.15805 * 64.72390 * 6 5 4 8 8 C 1.38011 * 119.93885 * 179.74606 * 7 6 5 9 9 C 1.38444 * 120.27485 * 0.55073 * 8 7 6 10 10 C 1.38114 * 120.32377 * 359.70100 * 9 8 7 11 11 C 1.38754 * 120.04724 * 0.02562 * 10 9 8 12 12 O 1.35672 * 120.13283 * 179.97438 * 11 10 9 13 13 C 1.34810 * 116.99956 * 354.40001 * 12 11 10 14 14 H 1.08003 * 120.00158 * 5.08440 * 13 12 11 15 15 C 1.38655 * 120.00140 * 185.07955 * 13 12 11 16 16 N 1.31553 * 119.99910 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99626 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47108 * 90.00024 * 17 15 13 19 19 H 1.48497 * 109.47007 * 209.99726 * 17 15 13 20 20 H 1.48498 * 109.46974 * 330.00039 * 17 15 13 21 21 C 1.39485 * 119.73455 * 359.97438 * 5 4 3 22 22 Cl 1.73606 * 120.07651 * 180.02562 * 21 5 4 23 23 C 1.38147 * 119.84826 * 0.02562 * 21 5 4 24 24 H 1.08994 * 109.47224 * 89.99047 * 1 2 3 25 25 H 1.09003 * 109.47323 * 209.99910 * 1 2 3 26 26 H 1.09003 * 109.46843 * 329.99616 * 1 2 3 27 27 H 1.08004 * 119.92566 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.06238 * 180.27736 * 4 3 2 29 29 H 1.07994 * 120.02640 * 359.97438 * 7 6 5 30 30 H 1.08006 * 119.86316 * 180.27310 * 8 7 6 31 31 H 1.08000 * 119.83861 * 179.72655 * 9 8 7 32 32 H 1.07995 * 119.97357 * 180.02562 * 10 9 8 33 33 H 0.97004 * 119.99978 * 179.97438 * 16 15 13 34 34 H 1.07998 * 119.94665 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5759 1.2067 0.0058 5 6 4.2765 0.0015 0.0061 6 6 5.7592 0.0026 0.0117 7 6 6.4545 0.5151 1.1045 8 6 7.8346 0.5090 1.1072 9 6 8.5325 0.0056 0.0227 10 6 7.8544 -0.5006 -1.0689 11 6 6.4669 -0.5062 -1.0834 12 8 5.7990 -1.0025 -2.1550 13 6 6.5384 -1.3683 -3.2213 14 1 7.6166 -1.3377 -3.1669 15 6 5.9146 -1.7840 -4.3878 16 7 6.6362 -2.1405 -5.4284 17 14 4.0497 -1.8365 -4.4819 18 1 3.5418 -0.5292 -4.9703 19 1 3.6314 -2.9109 -5.4177 20 1 3.4935 -2.1108 -3.1326 21 6 3.5770 -1.2052 0.0010 22 17 4.4405 -2.7113 0.0019 23 6 2.1956 -1.1993 -0.0048 24 1 -0.3633 0.0002 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6527 2.1332 0.0004 28 1 4.1122 2.1442 0.0103 29 1 5.9141 0.9135 1.9503 30 1 8.3725 0.9027 1.9570 31 1 9.6125 0.0083 0.0304 32 1 8.4045 -0.8922 -1.9117 33 1 6.1998 -2.4316 -6.2444 34 1 1.6524 -2.1327 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239862486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = -4.645901 kcal Electronic energy + Delta-G solvation = -20146.809830 eV Core-core repulsion = 17035.232773 eV Total energy + Delta-G solvation = -3111.577057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15233 -39.95519 -38.12813 -37.31393 -34.55860 -34.29672 -31.69443 -31.32971 -30.67480 -27.57949 -27.02056 -23.84036 -23.53032 -22.79146 -21.76737 -19.75783 -19.11758 -17.57925 -16.80616 -16.56701 -16.45536 -16.04219 -15.50701 -15.46015 -15.23178 -14.76079 -14.72106 -14.28544 -14.05497 -14.02528 -13.60585 -13.23153 -13.01838 -12.82741 -12.56572 -12.44163 -12.31668 -12.19197 -12.08474 -11.95551 -11.66924 -11.24067 -10.90888 -9.94659 -9.72143 -9.34871 -8.91894 -8.50353 -6.18485 0.07604 0.30610 0.62180 0.75161 1.25881 1.29266 1.32390 1.49427 2.26157 2.64259 2.79219 3.07632 3.17160 3.69888 3.89949 3.99471 4.18508 4.26234 4.31740 4.40318 4.54144 4.60459 4.68380 4.82941 4.87322 4.93886 4.95373 5.11168 5.24754 5.34321 5.37868 5.48115 5.55277 5.62773 5.74306 5.78982 5.90845 5.96323 6.25667 6.86292 7.64155 8.61460 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.009285 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.312387 B = 3014.770513 C = 4478.425142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.116 4.116 4 C -0.101 4.101 5 C -0.040 4.040 6 C -0.134 4.134 7 C -0.058 4.058 8 C -0.184 4.184 9 C -0.071 4.071 10 C -0.246 4.246 11 C 0.148 3.852 12 O -0.221 6.221 13 C -0.387 4.387 14 H 0.081 0.919 15 C 0.018 3.982 16 N -0.923 5.923 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.255 1.255 21 C -0.034 4.034 22 Cl -0.082 7.082 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.282 0.718 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 6.966 14.496 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.041 4.041 6 C -0.135 4.135 7 C -0.076 4.076 8 C -0.202 4.202 9 C -0.089 4.089 10 C -0.265 4.265 11 C 0.097 3.903 12 O -0.127 6.127 13 C -0.464 4.464 14 H 0.098 0.902 15 C -0.180 4.180 16 N -0.564 5.564 17 Si 0.772 3.228 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.179 1.179 21 C -0.060 4.060 22 Cl -0.053 7.053 23 C -0.149 4.149 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.180 0.820 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.082 6.704 14.246 18.696 hybrid contribution 0.297 -0.798 -0.914 1.250 sum -9.784 5.906 13.332 17.560 Atomic orbital electron populations 1.20846 0.87949 1.04405 1.03262 1.20280 0.98122 0.91675 0.98257 1.21402 0.93340 0.98961 0.99627 1.21452 0.94867 0.96569 0.99067 1.18681 0.92182 0.92361 1.00863 1.18043 0.91405 1.08766 0.95306 1.21133 0.94477 0.96264 0.95691 1.21108 0.93733 1.05576 0.99822 1.21215 1.00444 0.95096 0.92131 1.21276 0.93788 1.09654 1.01826 1.19508 0.91162 0.91831 0.87760 1.83569 1.35597 1.71741 1.21773 1.20674 0.91756 1.44086 0.89868 0.90188 1.25057 1.03752 0.95756 0.93437 1.69721 1.37803 1.45087 1.03811 0.85492 0.79647 0.78397 0.79225 1.19533 1.19696 1.17871 1.21297 0.92990 0.86659 1.05076 1.98353 1.77826 1.32391 1.96772 1.21091 0.91089 1.00090 1.02646 0.90526 0.90554 0.89061 0.82020 0.83676 0.83373 0.82863 0.84269 0.87403 0.90828 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.00 71.24 0.71 -1.05 16 2 C -0.08 -2.07 5.88 -19.82 -0.12 -2.19 16 3 C -0.12 -2.78 9.68 22.24 0.22 -2.56 16 4 C -0.10 -2.98 9.73 22.49 0.22 -2.76 16 5 C -0.04 -1.47 4.95 -20.03 -0.10 -1.57 16 6 C -0.13 -5.24 4.68 -19.93 -0.09 -5.33 16 7 C -0.06 -1.81 9.73 22.47 0.22 -1.59 16 8 C -0.18 -5.39 10.03 22.26 0.22 -5.17 16 9 C -0.07 -2.43 10.03 22.29 0.22 -2.21 16 10 C -0.25 -10.93 9.16 22.36 0.20 -10.72 16 11 C 0.15 6.94 5.90 22.81 0.13 7.07 16 12 O -0.22 -11.89 7.03 -21.68 -0.15 -12.04 16 13 C -0.39 -22.92 9.95 67.92 0.68 -22.25 16 14 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 15 C 0.02 1.08 5.49 84.83 0.47 1.55 16 16 N -0.92 -56.12 13.96 21.61 0.30 -55.82 16 17 Si 0.95 46.95 28.62 68.60 1.96 48.92 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.25 -12.67 7.11 99.48 0.71 -11.96 16 21 C -0.03 -1.26 6.08 22.55 0.14 -1.12 16 22 Cl -0.08 -3.35 26.66 -2.72 -0.07 -3.42 16 23 C -0.13 -4.04 9.47 22.26 0.21 -3.83 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.10 8.08 -2.39 -0.02 1.09 16 26 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 33 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 34 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.48 310.40 6.49 -62.99 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.12 Total: 13.11 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 3.33 Total: -53.73 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.30 Total: -55.82 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.15 Total: -12.04 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.96 Total: 48.92 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.07 Total: -3.42 kcal Total: -69.48 6.49 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239862486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.340 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds