Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76204 * 102.99923 * 2 1 4 4 C 1.39135 * 120.00571 * 0.02562 * 3 2 1 5 5 C 1.38207 * 120.20726 * 179.97438 * 4 3 2 6 6 C 1.38033 * 120.22752 * 359.72328 * 5 4 3 7 7 C 1.39627 * 120.01250 * 0.55638 * 6 5 4 8 8 C 1.48017 * 120.09887 * 179.71470 * 7 6 5 9 9 C 1.40010 * 119.86387 * 359.73129 * 8 7 6 10 10 C 1.36197 * 120.18427 * 180.02562 * 9 8 7 11 11 C 1.40942 * 119.89891 * 359.97438 * 10 9 8 12 12 C 1.40956 * 120.13231 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00340 * 324.96191 * 12 11 10 14 14 C 1.40000 * 119.99899 * 144.96427 * 12 11 10 15 15 N 1.30815 * 120.00535 * 151.00482 * 14 12 11 16 16 Si 1.86805 * 119.99774 * 331.00701 * 14 12 11 17 17 H 1.48499 * 109.46835 * 267.56539 * 16 14 12 18 18 H 1.48498 * 109.47193 * 27.56490 * 16 14 12 19 19 H 1.48503 * 109.47116 * 147.56708 * 16 14 12 20 20 C 1.41160 * 119.72882 * 0.25712 * 11 10 9 21 21 F 1.35098 * 120.09698 * 179.72796 * 20 11 10 22 22 C 1.36579 * 119.81340 * 359.48394 * 20 11 10 23 23 C 1.38671 * 120.01386 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47707 * 300.00046 * 1 2 3 26 26 H 1.09002 * 109.47239 * 60.00360 * 1 2 3 27 27 H 1.08000 * 119.89663 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.88852 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.98989 * 180.27455 * 6 5 4 30 30 H 1.07999 * 119.90976 * 0.03861 * 9 8 7 31 31 H 1.08004 * 120.04763 * 179.97438 * 10 9 8 32 32 H 0.96990 * 120.00365 * 179.97438 * 15 14 12 33 33 H 1.07996 * 119.95197 * 180.23677 * 22 20 11 34 34 H 1.08000 * 120.10934 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1928 2.6659 0.0005 5 6 1.4990 4.0136 0.0011 6 6 2.8159 4.4271 0.0068 7 6 3.8444 3.4828 0.0004 8 6 5.2573 3.9241 0.0002 9 6 5.5607 5.2909 0.0008 10 6 6.8585 5.7042 0.0000 11 6 7.8987 4.7532 -0.0007 12 6 9.2435 5.1754 -0.0020 13 1 9.5289 6.0677 -0.5394 14 6 10.2094 4.4381 0.6933 15 7 11.4516 4.4367 0.2834 16 14 9.7241 3.4561 2.2065 17 1 9.9192 4.2888 3.4205 18 1 8.2969 3.0594 2.1025 19 1 10.5706 2.2395 2.2995 20 6 7.5882 3.3761 -0.0062 21 9 8.5794 2.4582 -0.0126 22 6 6.2829 2.9743 -0.0001 23 6 3.5363 2.1227 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.1605 2.3483 0.0014 28 1 0.7051 4.7458 0.0019 29 1 3.0507 5.4812 0.0117 30 1 4.7636 6.0195 0.0020 31 1 7.0901 6.7591 0.0001 32 1 12.1208 3.9262 0.7653 33 1 6.0428 1.9214 -0.0005 34 1 4.3278 1.3878 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241313770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -3.741745 kcal Electronic energy + Delta-G solvation = -19295.367419 eV Core-core repulsion = 16198.246065 eV Total energy + Delta-G solvation = -3097.121354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.75337 -39.07162 -37.27207 -34.03453 -32.11503 -30.98829 -29.76346 -29.45610 -28.65032 -25.26318 -22.97577 -22.34339 -20.85658 -20.32949 -18.06934 -17.54629 -16.29799 -15.78818 -15.62235 -15.28549 -14.58044 -14.28977 -14.27841 -14.09450 -13.94056 -13.62428 -13.05403 -12.88591 -12.78376 -12.76959 -12.24652 -12.03884 -11.58972 -11.49398 -11.10350 -11.02510 -10.84852 -10.39388 -10.17728 -9.97275 -9.71709 -9.60911 -9.33855 -8.82779 -7.86643 -7.44349 -7.25555 -7.22859 -4.64118 1.25354 1.54913 1.56497 2.43082 2.47466 2.53600 3.08049 3.15907 3.21696 3.87786 3.97765 4.41929 4.89328 4.89672 5.04720 5.08760 5.10281 5.33778 5.45492 5.55360 5.69293 5.72718 5.80747 5.94643 6.10249 6.32220 6.45636 6.48050 6.57641 6.64920 6.83491 6.94741 7.07077 7.24116 7.38158 7.54190 7.61411 7.83829 8.04388 8.36803 8.48092 9.72584 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004192 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.538624 B = 6677.003366 C = 7391.022243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.133 6.133 3 C -0.071 4.071 4 C -0.170 4.170 5 C -0.092 4.092 6 C -0.143 4.143 7 C 0.038 3.962 8 C -0.191 4.191 9 C -0.061 4.061 10 C -0.199 4.199 11 C 0.070 3.930 12 C -0.434 4.434 13 H 0.101 0.899 14 C 0.089 3.911 15 N -0.769 5.769 16 Si 0.922 3.078 17 H -0.285 1.285 18 H -0.241 1.241 19 H -0.276 1.276 20 C -0.022 4.022 21 F -0.151 7.151 22 C -0.082 4.082 23 C -0.121 4.121 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.292 0.708 33 H 0.108 0.892 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 -3.764 1.046 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.108 5.892 3 C -0.184 4.184 4 C -0.193 4.193 5 C -0.112 4.112 6 C -0.163 4.163 7 C 0.036 3.964 8 C -0.192 4.192 9 C -0.079 4.079 10 C -0.218 4.218 11 C 0.066 3.934 12 C -0.459 4.459 13 H 0.119 0.881 14 C -0.136 4.136 15 N -0.389 5.389 16 Si 0.747 3.253 17 H -0.213 1.213 18 H -0.165 1.165 19 H -0.201 1.201 20 C -0.042 4.042 21 F -0.130 7.130 22 C -0.101 4.101 23 C -0.145 4.145 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.721 -4.909 1.009 15.551 hybrid contribution -0.601 0.521 0.553 0.969 sum -15.322 -4.388 1.561 16.015 Atomic orbital electron populations 1.23602 0.95314 1.06577 1.05472 1.85461 1.05849 1.04664 1.93229 1.21466 0.96611 0.95394 1.04879 1.20924 0.97351 0.93264 1.07809 1.20842 0.96333 0.94875 0.99141 1.21230 0.91956 0.99527 1.03629 1.18761 0.92847 0.91674 0.93112 1.17721 0.89544 0.92780 1.19158 1.20518 0.96008 0.93891 0.97496 1.20585 0.91516 0.98187 1.11557 1.17789 0.94422 0.89627 0.91518 1.19490 0.89879 1.10191 1.26337 0.88146 1.26415 0.94255 0.93811 0.99128 1.69751 1.03706 1.30748 1.34737 0.86114 0.82297 0.78454 0.78389 1.21298 1.16497 1.20072 1.17263 0.83930 0.86606 1.16415 1.91041 1.61145 1.65955 1.94886 1.20416 0.91247 0.98511 0.99920 1.20793 0.93831 0.95792 1.04062 0.87810 0.89954 0.89938 0.86777 0.86375 0.85783 0.87763 0.87091 0.89767 0.87364 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.15 101.05 0.92 -0.30 16 2 S -0.13 -1.73 22.56 -107.50 -2.43 -4.16 16 3 C -0.07 -1.09 6.11 -39.09 -0.24 -1.32 16 4 C -0.17 -2.31 9.36 -39.26 -0.37 -2.67 16 5 C -0.09 -1.24 10.02 -39.67 -0.40 -1.64 16 6 C -0.14 -2.22 9.43 -39.14 -0.37 -2.59 16 7 C 0.04 0.68 5.88 -104.92 -0.62 0.07 16 8 C -0.19 -3.88 5.90 -104.65 -0.62 -4.50 16 9 C -0.06 -1.20 9.35 -39.65 -0.37 -1.57 16 10 C -0.20 -4.31 9.73 -39.29 -0.38 -4.69 16 11 C 0.07 1.72 4.87 -106.74 -0.52 1.20 16 12 C -0.43 -11.22 9.37 -37.89 -0.36 -11.58 16 13 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.09 2.27 4.72 -17.32 -0.08 2.18 16 15 N -0.77 -19.71 13.93 55.55 0.77 -18.94 16 16 Si 0.92 21.05 25.37 -169.99 -4.31 16.74 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.24 -5.70 5.31 56.52 0.30 -5.40 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.02 -0.54 4.96 -39.07 -0.19 -0.74 16 21 F -0.15 -3.78 12.79 2.25 0.03 -3.75 16 22 C -0.08 -1.80 9.33 -39.60 -0.37 -2.17 16 23 C -0.12 -2.10 9.17 -38.97 -0.36 -2.46 16 24 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.08 0.66 7.74 -51.92 -0.40 0.26 16 26 H 0.08 0.66 7.75 -51.92 -0.40 0.26 16 27 H 0.11 1.25 5.86 -52.49 -0.31 0.94 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.73 6.17 -52.49 -0.32 1.41 16 30 H 0.10 1.72 6.17 -52.49 -0.32 1.40 16 31 H 0.11 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 33 H 0.11 2.17 6.17 -52.49 -0.32 1.85 16 34 H 0.12 2.16 6.18 -52.49 -0.32 1.83 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -26.86 298.15 -9.09 -35.95 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.33 Total: 2.44 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: -4.31 Total: -32.77 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.77 Total: -18.94 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.03 Total: -3.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.31 Total: 16.74 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.43 Total: -4.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.86 -9.09 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241313770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.207 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds