Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76204 * 102.99923 * 2 1 4 4 C 1.39135 * 120.00571 * 0.02562 * 3 2 1 5 5 C 1.38207 * 120.20726 * 179.97438 * 4 3 2 6 6 C 1.38033 * 120.22752 * 359.72328 * 5 4 3 7 7 C 1.39627 * 120.01250 * 0.55638 * 6 5 4 8 8 C 1.48017 * 120.09887 * 179.71470 * 7 6 5 9 9 C 1.40010 * 119.86387 * 359.73129 * 8 7 6 10 10 C 1.36197 * 120.18427 * 180.02562 * 9 8 7 11 11 C 1.40942 * 119.89891 * 359.97438 * 10 9 8 12 12 C 1.40956 * 120.13231 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00340 * 324.96191 * 12 11 10 14 14 C 1.40000 * 119.99899 * 144.96427 * 12 11 10 15 15 N 1.30815 * 120.00535 * 151.00482 * 14 12 11 16 16 Si 1.86805 * 119.99774 * 331.00701 * 14 12 11 17 17 H 1.48499 * 109.46835 * 267.56539 * 16 14 12 18 18 H 1.48498 * 109.47193 * 27.56490 * 16 14 12 19 19 H 1.48503 * 109.47116 * 147.56708 * 16 14 12 20 20 C 1.41160 * 119.72882 * 0.25712 * 11 10 9 21 21 F 1.35098 * 120.09698 * 179.72796 * 20 11 10 22 22 C 1.36579 * 119.81340 * 359.48394 * 20 11 10 23 23 C 1.38671 * 120.01386 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47707 * 300.00046 * 1 2 3 26 26 H 1.09002 * 109.47239 * 60.00360 * 1 2 3 27 27 H 1.08000 * 119.89663 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.88852 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.98989 * 180.27455 * 6 5 4 30 30 H 1.07999 * 119.90976 * 0.03861 * 9 8 7 31 31 H 1.08004 * 120.04763 * 179.97438 * 10 9 8 32 32 H 0.96990 * 120.00365 * 179.97438 * 15 14 12 33 33 H 1.07996 * 119.95197 * 180.23677 * 22 20 11 34 34 H 1.08000 * 120.10934 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1928 2.6659 0.0005 5 6 1.4990 4.0136 0.0011 6 6 2.8159 4.4271 0.0068 7 6 3.8444 3.4828 0.0004 8 6 5.2573 3.9241 0.0002 9 6 5.5607 5.2909 0.0008 10 6 6.8585 5.7042 0.0000 11 6 7.8987 4.7532 -0.0007 12 6 9.2435 5.1754 -0.0020 13 1 9.5289 6.0677 -0.5394 14 6 10.2094 4.4381 0.6933 15 7 11.4516 4.4367 0.2834 16 14 9.7241 3.4561 2.2065 17 1 9.9192 4.2888 3.4205 18 1 8.2969 3.0594 2.1025 19 1 10.5706 2.2395 2.2995 20 6 7.5882 3.3761 -0.0062 21 9 8.5794 2.4582 -0.0126 22 6 6.2829 2.9743 -0.0001 23 6 3.5363 2.1227 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.1605 2.3483 0.0014 28 1 0.7051 4.7458 0.0019 29 1 3.0507 5.4812 0.0117 30 1 4.7636 6.0195 0.0020 31 1 7.0901 6.7591 0.0001 32 1 12.1208 3.9262 0.7653 33 1 6.0428 1.9214 -0.0005 34 1 4.3278 1.3878 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241313770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -16.171100 kcal Electronic energy + Delta-G solvation = -19295.906396 eV Core-core repulsion = 16198.246065 eV Total energy + Delta-G solvation = -3097.660331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.65319 -40.44754 -38.83599 -35.79202 -33.64180 -32.26346 -31.09758 -31.03473 -29.63008 -26.89518 -24.33725 -23.83279 -22.42540 -21.84713 -19.88704 -18.86995 -17.73603 -17.38896 -17.04419 -16.94446 -16.29686 -15.81959 -15.61622 -15.41330 -14.92167 -14.85112 -14.71390 -14.22945 -14.13851 -13.95589 -13.77715 -13.45141 -13.16874 -13.13450 -12.63084 -12.50360 -12.22891 -11.96468 -11.77768 -11.48335 -11.22130 -11.09374 -10.72174 -10.24219 -9.58495 -9.08944 -8.98955 -8.36597 -6.52559 -0.12035 0.36843 0.60087 0.70672 0.94328 1.24419 1.37607 1.38102 1.53214 2.08322 2.38998 2.87601 3.36457 3.70178 3.88979 3.94082 4.19205 4.24182 4.29238 4.29917 4.31162 4.51458 4.53304 4.78501 4.80418 4.86065 4.91095 5.02280 5.17901 5.25654 5.39458 5.48215 5.54655 5.58881 5.78772 5.98995 6.03326 6.05702 6.21196 6.54075 6.67487 7.96030 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004192 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.538624 B = 6677.003366 C = 7391.022243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.171 6.171 3 C -0.082 4.082 4 C -0.153 4.153 5 C -0.088 4.088 6 C -0.138 4.138 7 C 0.001 3.999 8 C -0.162 4.162 9 C -0.062 4.062 10 C -0.196 4.196 11 C 0.053 3.947 12 C -0.484 4.484 13 H 0.076 0.924 14 C 0.064 3.936 15 N -0.813 5.813 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.256 1.256 19 H -0.269 1.269 20 C -0.045 4.045 21 F -0.162 7.162 22 C -0.099 4.099 23 C -0.135 4.135 24 H 0.125 0.875 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.298 0.702 33 H 0.119 0.881 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.287 -3.828 1.506 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.070 5.930 3 C -0.195 4.195 4 C -0.177 4.177 5 C -0.107 4.107 6 C -0.158 4.158 7 C -0.001 4.001 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.215 4.215 11 C 0.050 3.950 12 C -0.511 4.511 13 H 0.094 0.906 14 C -0.156 4.156 15 N -0.437 5.437 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.180 1.180 19 H -0.194 1.194 20 C -0.065 4.065 21 F -0.142 7.142 22 C -0.118 4.118 23 C -0.158 4.158 24 H 0.143 0.857 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.166 0.834 28 H 0.177 0.823 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.293 -4.978 1.472 20.946 hybrid contribution 0.435 0.407 0.339 0.685 sum -19.858 -4.572 1.812 20.458 Atomic orbital electron populations 1.23747 0.90839 1.08467 1.06688 1.85674 1.10754 1.03577 1.92972 1.21663 0.96197 0.96971 1.04627 1.21449 0.98571 0.93117 1.04540 1.21309 0.96439 0.95715 0.97271 1.21516 0.92260 0.99929 1.02104 1.18747 0.91939 0.92726 0.96677 1.18223 0.90869 0.92909 1.14332 1.20926 0.96281 0.94484 0.96286 1.20908 0.91837 0.98675 1.10093 1.17993 0.94666 0.90290 0.92068 1.19363 0.91201 1.10821 1.29726 0.90589 1.26846 0.94198 0.94327 1.00265 1.69767 1.04472 1.33245 1.36173 0.85570 0.81040 0.78032 0.77052 1.20042 1.18042 1.19361 1.17619 0.84593 0.86659 1.17598 1.90999 1.61810 1.66276 1.95079 1.20668 0.90810 0.99783 1.00563 1.20834 0.94887 0.95499 1.04597 0.85711 0.88640 0.88624 0.83402 0.82313 0.83929 0.83496 0.85508 0.89170 0.86321 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.15 113.37 1.04 -0.57 16 2 S -0.17 -3.99 22.56 -56.49 -1.27 -5.26 16 3 C -0.08 -2.24 6.11 22.59 0.14 -2.10 16 4 C -0.15 -3.32 9.36 22.48 0.21 -3.11 16 5 C -0.09 -1.83 10.02 22.21 0.22 -1.61 16 6 C -0.14 -3.61 9.43 22.56 0.21 -3.40 16 7 C 0.00 0.03 5.88 -20.05 -0.12 -0.09 16 8 C -0.16 -6.35 5.90 -19.88 -0.12 -6.47 16 9 C -0.06 -2.30 9.35 22.22 0.21 -2.09 16 10 C -0.20 -8.41 9.73 22.46 0.22 -8.19 16 11 C 0.05 2.69 4.87 -21.23 -0.10 2.59 16 12 C -0.48 -26.72 9.37 23.36 0.22 -26.51 16 13 H 0.08 4.37 8.06 -2.91 -0.02 4.34 16 14 C 0.06 3.45 4.72 85.27 0.40 3.85 16 15 N -0.81 -44.44 13.93 21.84 0.30 -44.13 16 16 Si 0.96 44.95 25.37 68.60 1.74 46.69 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.26 -12.45 5.31 99.48 0.53 -11.92 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 C -0.04 -2.26 4.96 22.60 0.11 -2.15 16 21 F -0.16 -8.51 12.79 44.97 0.57 -7.93 16 22 C -0.10 -4.40 9.33 22.25 0.21 -4.19 16 23 C -0.13 -4.42 9.17 22.67 0.21 -4.21 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 0.99 7.74 -2.39 -0.02 0.97 16 26 H 0.09 0.99 7.75 -2.39 -0.02 0.98 16 27 H 0.15 2.21 5.86 -2.91 -0.02 2.19 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.14 3.15 6.17 -2.91 -0.02 3.13 16 30 H 0.15 4.17 6.17 -2.91 -0.02 4.15 16 31 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 32 H 0.30 14.64 8.30 -92.72 -0.77 13.87 16 33 H 0.12 4.88 6.17 -2.91 -0.02 4.86 16 34 H 0.11 3.83 6.18 -2.91 -0.02 3.81 16 Total: -1.00 -62.47 298.15 5.36 -57.11 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.96 Total: 11.77 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 3.06 Total: -58.24 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.30 Total: -44.13 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.57 Total: -7.93 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.74 Total: 46.69 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.27 Total: -5.26 kcal Total: -62.47 5.36 -57.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241313770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.941 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds