Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76210 * 102.99898 * 2 1 4 4 C 1.39135 * 120.00635 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.21783 * 179.97438 * 4 3 2 6 6 C 1.38016 * 120.23085 * 359.97438 * 5 4 3 7 7 C 1.39674 * 120.01079 * 359.78843 * 6 5 4 8 8 C 1.47904 * 120.10780 * 180.26282 * 7 6 5 9 9 C 1.39034 * 120.32136 * 129.92818 * 8 7 6 10 10 C 1.38402 * 119.96011 * 179.76127 * 9 8 7 11 11 F 1.35106 * 119.69889 * 180.25280 * 10 9 8 12 12 C 1.39206 * 120.60634 * 0.49085 * 10 9 8 13 13 C 1.36353 * 120.64996 * 359.76771 * 12 10 9 14 14 C 1.40786 * 120.01776 * 359.97438 * 13 12 10 15 15 C 1.40829 * 120.29762 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99614 * 152.97242 * 15 14 13 17 17 C 1.40045 * 120.00090 * 332.96532 * 15 14 13 18 18 N 1.30800 * 120.00040 * 344.41313 * 17 15 14 19 19 Si 1.86792 * 119.99902 * 164.41369 * 17 15 14 20 20 H 1.48500 * 109.47538 * 90.00110 * 19 17 15 21 21 H 1.48502 * 109.47486 * 210.00452 * 19 17 15 22 22 H 1.48505 * 109.47303 * 330.00193 * 19 17 15 23 23 C 1.38658 * 120.00477 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.47045 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47480 * 300.00337 * 1 2 3 27 27 H 1.07998 * 119.89169 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.88433 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.99330 * 180.02562 * 6 5 4 30 30 H 1.08005 * 120.02120 * 359.97204 * 9 8 7 31 31 H 1.08002 * 119.67640 * 179.73999 * 12 10 9 32 32 H 1.08004 * 119.99131 * 179.97438 * 13 12 10 33 33 H 0.97000 * 119.99893 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.11759 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1929 2.6659 0.0005 5 6 1.4988 4.0138 0.0011 6 6 2.8155 4.4275 0.0016 7 6 3.8445 3.4831 0.0061 8 6 5.2562 3.9241 0.0125 9 6 6.1517 3.3979 0.9368 10 6 7.4723 3.8123 0.9330 11 9 8.3391 3.2937 1.8302 12 6 7.9144 4.7620 0.0163 13 6 7.0563 5.2983 -0.8976 14 6 5.7085 4.8921 -0.9212 15 6 4.8170 5.4425 -1.8622 16 1 3.9576 4.8752 -2.1879 17 6 5.0446 6.7254 -2.3755 18 7 5.8862 7.5290 -1.7781 19 14 4.1465 7.2890 -3.9133 20 1 2.8680 7.9397 -3.5296 21 1 4.9930 8.2590 -4.6536 22 1 3.8645 6.1163 -4.7797 23 6 3.5363 2.1225 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.1606 2.3483 0.0014 28 1 0.7047 4.7458 0.0019 29 1 3.0501 5.4818 0.0024 30 1 5.8179 2.6638 1.6552 31 1 8.9472 5.0776 0.0294 32 1 7.4106 6.0347 -1.6037 33 1 6.0442 8.4175 -2.1339 34 1 4.3278 1.3876 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241314119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -15.264734 kcal Electronic energy + Delta-G solvation = -19489.845762 eV Core-core repulsion = 16392.224734 eV Total energy + Delta-G solvation = -3097.621028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.53038 -38.84788 -37.09335 -33.80620 -31.96195 -30.56791 -29.51367 -29.31244 -27.94929 -25.23520 -22.63966 -22.30625 -20.96208 -20.12296 -17.64566 -17.18316 -15.87685 -15.78546 -15.49514 -14.88733 -14.37238 -14.27891 -14.20046 -14.04747 -13.78743 -13.48946 -12.92648 -12.73130 -12.56574 -12.30666 -12.03603 -11.92271 -11.45142 -11.27031 -11.02881 -10.90942 -10.86481 -10.49051 -10.12852 -9.98866 -9.59406 -9.33994 -9.23673 -8.50595 -7.60427 -7.39222 -7.10825 -6.97869 -4.54067 1.65380 1.71681 1.84229 2.53472 2.59444 2.77058 2.96318 2.98201 3.04851 3.76869 4.26341 4.38964 5.01628 5.02555 5.26480 5.31574 5.42790 5.54621 5.62567 5.88448 5.99369 6.00400 6.00955 6.18232 6.32271 6.58806 6.67666 6.78524 6.86214 6.98890 7.01113 7.25370 7.29178 7.40275 7.61696 7.71228 7.82335 8.00684 8.34899 8.60407 8.67850 9.93056 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.006301 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.287589 B = 4442.369758 C = 6315.630645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.139 6.139 3 C -0.086 4.086 4 C -0.155 4.155 5 C -0.110 4.110 6 C -0.095 4.095 7 C 0.036 3.964 8 C -0.171 4.171 9 C -0.093 4.093 10 C -0.046 4.046 11 F -0.173 7.173 12 C -0.123 4.123 13 C -0.135 4.135 14 C 0.125 3.875 15 C -0.442 4.442 16 H 0.087 0.913 17 C 0.076 3.924 18 N -0.783 5.783 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.106 4.106 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.285 0.715 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 -5.398 0.405 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.101 5.899 3 C -0.198 4.198 4 C -0.178 4.178 5 C -0.130 4.130 6 C -0.115 4.115 7 C 0.034 3.966 8 C -0.172 4.172 9 C -0.112 4.112 10 C -0.065 4.065 11 F -0.152 7.152 12 C -0.142 4.142 13 C -0.154 4.154 14 C 0.122 3.878 15 C -0.470 4.470 16 H 0.105 0.895 17 C -0.144 4.144 18 N -0.408 5.408 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.129 4.129 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.518 -6.218 0.420 9.766 hybrid contribution -1.025 1.442 -0.500 1.839 sum -8.544 -4.776 -0.080 9.788 Atomic orbital electron populations 1.23577 0.95472 1.06374 1.05424 1.85338 1.05713 1.05190 1.93663 1.21390 0.96653 0.95039 1.06757 1.20949 0.97197 0.93349 1.06340 1.20906 0.96647 0.94720 1.00694 1.21504 0.91327 1.00661 0.98030 1.18633 0.93044 0.91112 0.93796 1.18312 0.90687 1.07210 1.01040 1.20533 0.91578 0.99899 0.99220 1.17175 0.87901 1.04817 0.96636 1.91294 1.69835 1.86720 1.67384 1.20510 0.99301 0.97539 0.96865 1.20938 0.92673 1.01900 0.99898 1.17555 0.91982 0.88632 0.89652 1.19608 1.08978 0.99220 1.19225 0.89510 1.25985 0.94550 0.96480 0.97393 1.69775 1.28172 1.07240 1.35566 0.86295 0.79875 0.79402 0.81309 1.19187 1.19887 1.18187 1.20896 0.93601 0.95751 1.02641 0.90006 0.87982 0.90046 0.86965 0.86468 0.84820 0.87842 0.88055 0.85451 0.90347 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.15 101.05 0.92 -0.46 16 2 S -0.14 -1.98 22.56 -107.50 -2.43 -4.41 16 3 C -0.09 -1.46 6.11 -39.09 -0.24 -1.70 16 4 C -0.15 -2.43 9.36 -39.26 -0.37 -2.80 16 5 C -0.11 -1.81 10.02 -39.67 -0.40 -2.21 16 6 C -0.10 -1.85 8.00 -39.13 -0.31 -2.16 16 7 C 0.04 0.75 4.93 -104.93 -0.52 0.23 16 8 C -0.17 -3.92 5.52 -104.25 -0.58 -4.50 16 9 C -0.09 -2.10 9.48 -39.23 -0.37 -2.47 16 10 C -0.05 -1.06 7.31 -39.16 -0.29 -1.34 16 11 F -0.17 -3.88 17.26 2.25 0.04 -3.84 16 12 C -0.12 -2.82 9.94 -39.90 -0.40 -3.22 16 13 C -0.13 -3.26 8.61 -39.30 -0.34 -3.60 16 14 C 0.12 3.05 5.55 -106.55 -0.59 2.46 16 15 C -0.44 -10.54 7.08 -37.93 -0.27 -10.81 16 16 H 0.09 2.05 6.64 -52.49 -0.35 1.70 16 17 C 0.08 1.72 5.16 -17.31 -0.09 1.63 16 18 N -0.78 -18.36 10.99 55.55 0.61 -17.75 16 19 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.11 -2.02 9.27 -38.95 -0.36 -2.38 16 24 H 0.08 0.77 7.75 -51.92 -0.40 0.37 16 25 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.08 0.75 7.74 -51.92 -0.40 0.35 16 27 H 0.11 1.44 5.86 -52.49 -0.31 1.13 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.13 2.72 7.28 -52.49 -0.38 2.34 16 30 H 0.10 2.15 8.05 -52.48 -0.42 1.73 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.13 3.11 6.26 -52.48 -0.33 2.78 16 33 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 34 H 0.12 2.27 8.05 -52.48 -0.42 1.85 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -25.33 307.38 -9.78 -35.11 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.42 Total: 7.35 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -4.19 Total: -33.34 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.61 Total: -17.75 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.43 Total: -4.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.33 -9.78 -35.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.845 kcal (2) G-P(sol) polarization free energy of solvation -25.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds