Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76210 * 102.99898 * 2 1 4 4 C 1.39135 * 120.00635 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.21783 * 179.97438 * 4 3 2 6 6 C 1.38016 * 120.23085 * 359.97438 * 5 4 3 7 7 C 1.39674 * 120.01079 * 359.78843 * 6 5 4 8 8 C 1.47904 * 120.10780 * 180.26282 * 7 6 5 9 9 C 1.39034 * 120.32136 * 129.92818 * 8 7 6 10 10 C 1.38402 * 119.96011 * 179.76127 * 9 8 7 11 11 F 1.35106 * 119.69889 * 180.25280 * 10 9 8 12 12 C 1.39206 * 120.60634 * 0.49085 * 10 9 8 13 13 C 1.36353 * 120.64996 * 359.76771 * 12 10 9 14 14 C 1.40786 * 120.01776 * 359.97438 * 13 12 10 15 15 C 1.40829 * 120.29762 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99614 * 152.97242 * 15 14 13 17 17 C 1.40045 * 120.00090 * 332.96532 * 15 14 13 18 18 N 1.30800 * 120.00040 * 344.41313 * 17 15 14 19 19 Si 1.86792 * 119.99902 * 164.41369 * 17 15 14 20 20 H 1.48500 * 109.47538 * 90.00110 * 19 17 15 21 21 H 1.48502 * 109.47486 * 210.00452 * 19 17 15 22 22 H 1.48505 * 109.47303 * 330.00193 * 19 17 15 23 23 C 1.38658 * 120.00477 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.47045 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47480 * 300.00337 * 1 2 3 27 27 H 1.07998 * 119.89169 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.88433 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.99330 * 180.02562 * 6 5 4 30 30 H 1.08005 * 120.02120 * 359.97204 * 9 8 7 31 31 H 1.08002 * 119.67640 * 179.73999 * 12 10 9 32 32 H 1.08004 * 119.99131 * 179.97438 * 13 12 10 33 33 H 0.97000 * 119.99893 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.11759 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1929 2.6659 0.0005 5 6 1.4988 4.0138 0.0011 6 6 2.8155 4.4275 0.0016 7 6 3.8445 3.4831 0.0061 8 6 5.2562 3.9241 0.0125 9 6 6.1517 3.3979 0.9368 10 6 7.4723 3.8123 0.9330 11 9 8.3391 3.2937 1.8302 12 6 7.9144 4.7620 0.0163 13 6 7.0563 5.2983 -0.8976 14 6 5.7085 4.8921 -0.9212 15 6 4.8170 5.4425 -1.8622 16 1 3.9576 4.8752 -2.1879 17 6 5.0446 6.7254 -2.3755 18 7 5.8862 7.5290 -1.7781 19 14 4.1465 7.2890 -3.9133 20 1 2.8680 7.9397 -3.5296 21 1 4.9930 8.2590 -4.6536 22 1 3.8645 6.1163 -4.7797 23 6 3.5363 2.1225 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.1606 2.3483 0.0014 28 1 0.7047 4.7458 0.0019 29 1 3.0501 5.4818 0.0024 30 1 5.8179 2.6638 1.6552 31 1 8.9472 5.0776 0.0294 32 1 7.4106 6.0347 -1.6037 33 1 6.0442 8.4175 -2.1339 34 1 4.3278 1.3876 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241314119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -24.325947 kcal Electronic energy + Delta-G solvation = -19490.238686 eV Core-core repulsion = 16392.224734 eV Total energy + Delta-G solvation = -3098.013952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.34660 -40.37657 -38.72681 -35.56898 -33.50961 -32.00430 -31.22516 -30.48710 -29.24284 -27.00987 -24.21009 -23.76207 -22.67817 -21.72425 -19.37767 -18.70039 -17.42568 -17.18898 -17.09263 -16.55651 -16.12897 -15.90476 -15.74812 -15.32888 -14.78012 -14.66040 -14.44968 -14.21508 -14.13134 -13.81393 -13.45564 -13.26715 -13.16098 -12.82662 -12.61638 -12.34199 -12.29746 -12.18341 -11.80707 -11.32395 -11.11376 -11.05985 -10.57248 -10.03790 -9.36754 -9.13460 -8.71099 -8.29333 -6.35567 0.18457 0.43585 0.63772 0.76934 1.05323 1.39924 1.46133 1.53691 1.56677 2.17911 2.59082 2.86721 3.55825 3.81082 4.03701 4.07691 4.22782 4.25133 4.32130 4.33713 4.51071 4.54132 4.64598 4.87472 4.89739 5.01217 5.07906 5.13460 5.23749 5.29401 5.47424 5.55993 5.70361 5.78271 5.87061 6.04743 6.10500 6.21542 6.53720 6.80779 6.87233 8.23292 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.006301 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.287589 B = 4442.369758 C = 6315.630645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.161 6.161 3 C -0.090 4.090 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.112 4.112 7 C 0.009 3.991 8 C -0.173 4.173 9 C -0.100 4.100 10 C -0.060 4.060 11 F -0.170 7.170 12 C -0.126 4.126 13 C -0.154 4.154 14 C 0.099 3.901 15 C -0.457 4.457 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.810 5.810 19 Si 0.974 3.026 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.119 4.119 24 H 0.092 0.908 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.294 0.706 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 -6.068 -0.084 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.080 5.920 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.007 3.993 8 C -0.175 4.175 9 C -0.119 4.119 10 C -0.080 4.080 11 F -0.150 7.150 12 C -0.145 4.145 13 C -0.174 4.174 14 C 0.096 3.904 15 C -0.485 4.485 16 H 0.101 0.899 17 C -0.175 4.175 18 N -0.435 5.435 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.185 1.185 23 C -0.143 4.143 24 H 0.111 0.889 25 H 0.145 0.855 26 H 0.113 0.887 27 H 0.168 0.832 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.479 -6.900 -0.052 12.547 hybrid contribution -0.226 1.531 -0.289 1.574 sum -10.705 -5.369 -0.340 11.981 Atomic orbital electron populations 1.23749 0.91120 1.08474 1.06577 1.85472 1.10440 1.02886 1.93246 1.21634 0.96024 0.97201 1.05303 1.21387 0.98708 0.92602 1.04039 1.21232 0.95966 0.96057 0.98933 1.21412 0.92638 0.99466 0.99693 1.18616 0.92138 0.92302 0.96234 1.18650 0.92249 1.06329 1.00227 1.20732 0.91503 1.00139 0.99478 1.17313 0.88312 1.05311 0.97073 1.91289 1.69736 1.86691 1.67241 1.20667 1.00072 0.97301 0.96469 1.20916 0.93087 1.02699 1.00670 1.17899 0.92405 0.89584 0.90471 1.19691 1.09025 0.99941 1.19824 0.89923 1.26715 0.95119 0.96018 0.99681 1.69811 1.29081 1.07828 1.36767 0.85305 0.78994 0.78786 0.77481 1.18265 1.19035 1.18528 1.20860 0.94871 0.94844 1.03680 0.88883 0.85475 0.88732 0.83160 0.83255 0.86758 0.86560 0.86290 0.86295 0.89541 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.15 113.37 1.04 -0.96 16 2 S -0.16 -4.19 22.56 -56.49 -1.27 -5.47 16 3 C -0.09 -2.88 6.11 22.59 0.14 -2.74 16 4 C -0.14 -4.04 9.36 22.48 0.21 -3.83 16 5 C -0.10 -3.14 10.02 22.21 0.22 -2.91 16 6 C -0.11 -4.35 8.00 22.56 0.18 -4.17 16 7 C 0.01 0.38 4.93 -20.06 -0.10 0.28 16 8 C -0.17 -8.26 5.52 -19.62 -0.11 -8.37 16 9 C -0.10 -4.64 9.48 22.50 0.21 -4.42 16 10 C -0.06 -2.87 7.31 22.54 0.16 -2.70 16 11 F -0.17 -7.72 17.26 44.97 0.78 -6.95 16 12 C -0.13 -5.97 9.94 22.06 0.22 -5.75 16 13 C -0.15 -7.78 8.61 22.45 0.19 -7.58 16 14 C 0.10 5.05 5.55 -21.12 -0.12 4.94 16 15 C -0.46 -22.43 7.08 23.34 0.17 -22.26 16 16 H 0.08 4.02 6.64 -2.91 -0.02 4.00 16 17 C 0.04 1.93 5.16 85.28 0.44 2.37 16 18 N -0.81 -38.73 10.99 21.85 0.24 -38.49 16 19 Si 0.97 35.18 29.59 68.60 2.03 37.21 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 21 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 23 C -0.12 -4.58 9.27 22.68 0.21 -4.37 16 24 H 0.09 1.28 7.75 -2.39 -0.02 1.26 16 25 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.26 7.74 -2.39 -0.02 1.24 16 27 H 0.15 3.05 5.86 -2.91 -0.02 3.04 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.11 4.81 7.28 -2.91 -0.02 4.79 16 30 H 0.12 4.97 8.05 -2.91 -0.02 4.94 16 31 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 32 H 0.12 6.08 6.26 -2.91 -0.02 6.06 16 33 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 34 H 0.11 4.38 8.05 -2.91 -0.02 4.35 16 Total: -1.00 -56.18 307.38 5.97 -50.22 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 1.13 Total: 25.97 kcal Atomic # 6 Polarization: -65.56 SS G_CDS: 3.07 Total: -62.49 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.24 Total: -38.49 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.78 Total: -6.95 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.27 Total: -5.47 kcal Total: -56.18 5.97 -50.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.889 kcal (2) G-P(sol) polarization free energy of solvation -56.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds