Wall clock time and date at job start Tue Mar 31 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76196 * 102.99978 * 2 1 4 4 C 1.39134 * 120.01218 * 359.97438 * 3 2 1 5 5 C 1.38212 * 120.21902 * 180.02562 * 4 3 2 6 6 C 1.38027 * 120.22463 * 0.02562 * 5 4 3 7 7 C 1.39650 * 120.01493 * 359.95494 * 6 5 4 8 8 C 1.47962 * 120.10793 * 180.02562 * 7 6 5 9 9 C 1.39937 * 119.89545 * 130.02214 * 8 7 6 10 10 C 1.36241 * 120.14080 * 179.97438 * 9 8 7 11 11 C 1.40971 * 119.92598 * 0.02562 * 10 9 8 12 12 C 1.41034 * 120.09878 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99867 * 204.70766 * 12 11 10 14 14 C 1.40005 * 119.99966 * 24.71236 * 12 11 10 15 15 N 1.30798 * 120.00196 * 17.96573 * 14 12 11 16 16 Si 1.86803 * 119.99508 * 197.96419 * 14 12 11 17 17 H 1.48498 * 109.46825 * 90.00152 * 16 14 12 18 18 H 1.48499 * 109.46874 * 209.99836 * 16 14 12 19 19 H 1.48493 * 109.47276 * 330.00024 * 16 14 12 20 20 C 1.40852 * 119.79509 * 359.74941 * 11 10 9 21 21 C 1.36494 * 119.85364 * 0.48428 * 20 11 10 22 22 F 1.35100 * 119.96154 * 179.79549 * 21 20 11 23 23 C 1.38671 * 120.00590 * 180.23291 * 3 2 1 24 24 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47053 * 300.00377 * 1 2 3 26 26 H 1.09002 * 109.46815 * 59.99799 * 1 2 3 27 27 H 1.08001 * 119.88999 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.88888 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99309 * 179.97438 * 6 5 4 30 30 H 1.07989 * 119.92635 * 359.97438 * 9 8 7 31 31 H 1.07993 * 120.02917 * 180.02562 * 10 9 8 32 32 H 0.96998 * 119.99678 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.07708 * 180.28013 * 20 11 10 34 34 H 1.08005 * 120.11315 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6659 -0.0005 5 6 1.4991 4.0137 -0.0011 6 6 2.8160 4.4272 -0.0016 7 6 3.8447 3.4828 -0.0007 8 6 5.2571 3.9237 -0.0007 9 6 6.1551 3.3876 0.9290 10 6 7.4569 3.7896 0.9331 11 6 7.8998 4.7482 -0.0008 12 6 9.2464 5.1674 0.0006 13 1 9.5110 6.1353 -0.3988 14 6 10.2401 4.3288 0.5196 15 7 10.0026 3.0521 0.6756 16 14 11.9052 5.0334 0.9892 17 1 11.8769 5.4658 2.4096 18 1 12.9509 3.9946 0.8088 19 1 12.2114 6.1998 0.1227 20 6 6.9945 5.2825 -0.9383 21 6 5.6912 4.8770 -0.9316 22 9 4.8200 5.3911 -1.8272 23 6 3.5365 2.1224 -0.0049 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.1608 2.3484 -0.0014 28 1 0.7052 4.7459 -0.0019 29 1 3.0509 5.4814 -0.0024 30 1 5.8156 2.6536 1.6446 31 1 8.1485 3.3744 1.6511 32 1 10.6910 2.4712 1.0356 33 1 7.3300 6.0137 -1.6588 34 1 4.3279 1.3874 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241314418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:45 Heat of formation + Delta-G solvation = -15.658475 kcal Electronic energy + Delta-G solvation = -19136.174637 eV Core-core repulsion = 16038.536535 eV Total energy + Delta-G solvation = -3097.638102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.82866 -38.79095 -37.25968 -34.01251 -31.81384 -30.69175 -29.60334 -29.12046 -28.37071 -25.41647 -22.55604 -22.30843 -20.94910 -20.38577 -17.79974 -17.34598 -16.07393 -15.66224 -15.20752 -15.01990 -14.74979 -14.63185 -14.29320 -14.03287 -13.86856 -13.44292 -13.13521 -12.69648 -12.58470 -12.42123 -12.22840 -11.95122 -11.39782 -11.27783 -11.24753 -11.11428 -10.56119 -10.49115 -10.20580 -10.08973 -9.65804 -9.53837 -9.32421 -8.56359 -7.68562 -7.34825 -7.20224 -7.04613 -4.62125 1.49427 1.61252 1.67655 2.48858 2.55555 2.79473 2.94775 2.98466 3.02789 3.73993 4.06539 4.38855 4.94533 4.94887 5.12493 5.20408 5.38660 5.47621 5.53598 5.57623 5.73699 5.85439 6.07787 6.15334 6.34015 6.53703 6.67907 6.73016 6.77918 6.82652 6.93973 7.07499 7.25902 7.41029 7.52333 7.79321 7.82063 7.98903 8.36175 8.58401 8.66700 9.88225 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.003783 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.466704 B = 7399.214192 C = 8187.543285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.132 6.132 3 C -0.081 4.081 4 C -0.158 4.158 5 C -0.101 4.101 6 C -0.121 4.121 7 C 0.032 3.968 8 C -0.240 4.240 9 C -0.055 4.055 10 C -0.176 4.176 11 C 0.136 3.864 12 C -0.443 4.443 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.773 5.773 16 Si 0.915 3.085 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.267 4.267 21 C 0.145 3.855 22 F -0.162 7.162 23 C -0.101 4.101 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.287 0.713 33 H 0.107 0.893 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 -2.798 1.104 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.109 5.891 3 C -0.194 4.194 4 C -0.181 4.181 5 C -0.121 4.121 6 C -0.141 4.141 7 C 0.030 3.970 8 C -0.242 4.242 9 C -0.073 4.073 10 C -0.195 4.195 11 C 0.133 3.867 12 C -0.471 4.471 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.396 5.396 16 Si 0.739 3.261 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.287 4.287 21 C 0.126 3.874 22 F -0.141 7.141 23 C -0.124 4.124 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.402 -4.081 1.131 11.231 hybrid contribution -0.228 1.381 -0.013 1.400 sum -10.630 -2.700 1.118 11.024 Atomic orbital electron populations 1.23602 0.95455 1.06536 1.05430 1.85444 1.05678 1.04625 1.93365 1.21492 0.96659 0.95416 1.05793 1.20962 0.97376 0.93245 1.06554 1.20861 0.96368 0.94890 0.99940 1.21365 0.92009 0.99595 1.01162 1.18723 0.92889 0.91591 0.93817 1.17943 0.92214 1.08184 1.05852 1.20314 0.93122 0.97525 0.96361 1.21046 0.94137 1.02804 1.01492 1.17458 0.92427 0.89090 0.87758 1.19709 0.91206 1.02760 1.33398 0.89667 1.26054 1.01696 0.94208 0.92711 1.69805 1.35739 1.04191 1.29866 0.86181 0.79859 0.79924 0.80157 1.18910 1.20000 1.18312 1.20618 0.92404 1.10438 1.05275 1.17194 0.87065 0.94728 0.88398 1.91348 1.69916 1.85937 1.66907 1.20917 0.93714 0.95728 1.02079 0.87827 0.89985 0.89990 0.86715 0.86352 0.86111 0.88275 0.85814 0.90183 0.87523 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 101.05 0.92 -0.39 16 2 S -0.13 -1.81 22.56 -107.50 -2.43 -4.23 16 3 C -0.08 -1.32 6.11 -39.09 -0.24 -1.56 16 4 C -0.16 -2.32 9.36 -39.26 -0.37 -2.68 16 5 C -0.10 -1.52 10.02 -39.67 -0.40 -1.92 16 6 C -0.12 -2.17 8.85 -39.13 -0.35 -2.51 16 7 C 0.03 0.63 5.31 -104.92 -0.56 0.08 16 8 C -0.24 -5.37 5.50 -104.56 -0.58 -5.94 16 9 C -0.05 -1.23 9.43 -39.66 -0.37 -1.61 16 10 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 11 C 0.14 3.43 5.57 -106.81 -0.60 2.84 16 12 C -0.44 -10.95 9.03 -37.86 -0.34 -11.30 16 13 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 14 C 0.07 1.73 5.13 -17.33 -0.09 1.64 16 15 N -0.77 -18.50 10.96 55.55 0.61 -17.89 16 16 Si 0.92 17.24 29.60 -169.99 -5.03 12.21 16 17 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 C -0.27 -6.47 9.70 -39.22 -0.38 -6.85 16 21 C 0.15 3.39 7.10 -39.50 -0.28 3.11 16 22 F -0.16 -3.61 15.85 2.25 0.04 -3.57 16 23 C -0.10 -1.88 9.25 -38.96 -0.36 -2.24 16 24 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 26 H 0.08 0.71 7.74 -51.92 -0.40 0.31 16 27 H 0.11 1.35 5.86 -52.49 -0.31 1.04 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 2.12 7.77 -52.49 -0.41 1.71 16 30 H 0.10 2.04 8.03 -52.49 -0.42 1.62 16 31 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 32 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 33 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 34 H 0.13 2.35 8.04 -52.48 -0.42 1.93 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -26.01 310.24 -9.96 -35.97 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.50 Total: 6.82 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: -4.32 Total: -33.98 kcal Atomic # 7 Polarization: -18.50 SS G_CDS: 0.61 Total: -17.89 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.43 Total: -4.23 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.01 -9.96 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.311 kcal (2) G-P(sol) polarization free energy of solvation -26.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds