Wall clock time and date at job start Tue Mar 31 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76196 * 102.99978 * 2 1 4 4 C 1.39134 * 120.01218 * 359.97438 * 3 2 1 5 5 C 1.38212 * 120.21902 * 180.02562 * 4 3 2 6 6 C 1.38027 * 120.22463 * 0.02562 * 5 4 3 7 7 C 1.39650 * 120.01493 * 359.95494 * 6 5 4 8 8 C 1.47962 * 120.10793 * 180.02562 * 7 6 5 9 9 C 1.39937 * 119.89545 * 130.02214 * 8 7 6 10 10 C 1.36241 * 120.14080 * 179.97438 * 9 8 7 11 11 C 1.40971 * 119.92598 * 0.02562 * 10 9 8 12 12 C 1.41034 * 120.09878 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99867 * 204.70766 * 12 11 10 14 14 C 1.40005 * 119.99966 * 24.71236 * 12 11 10 15 15 N 1.30798 * 120.00196 * 17.96573 * 14 12 11 16 16 Si 1.86803 * 119.99508 * 197.96419 * 14 12 11 17 17 H 1.48498 * 109.46825 * 90.00152 * 16 14 12 18 18 H 1.48499 * 109.46874 * 209.99836 * 16 14 12 19 19 H 1.48493 * 109.47276 * 330.00024 * 16 14 12 20 20 C 1.40852 * 119.79509 * 359.74941 * 11 10 9 21 21 C 1.36494 * 119.85364 * 0.48428 * 20 11 10 22 22 F 1.35100 * 119.96154 * 179.79549 * 21 20 11 23 23 C 1.38671 * 120.00590 * 180.23291 * 3 2 1 24 24 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47053 * 300.00377 * 1 2 3 26 26 H 1.09002 * 109.46815 * 59.99799 * 1 2 3 27 27 H 1.08001 * 119.88999 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.88888 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99309 * 179.97438 * 6 5 4 30 30 H 1.07989 * 119.92635 * 359.97438 * 9 8 7 31 31 H 1.07993 * 120.02917 * 180.02562 * 10 9 8 32 32 H 0.96998 * 119.99678 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.07708 * 180.28013 * 20 11 10 34 34 H 1.08005 * 120.11315 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6659 -0.0005 5 6 1.4991 4.0137 -0.0011 6 6 2.8160 4.4272 -0.0016 7 6 3.8447 3.4828 -0.0007 8 6 5.2571 3.9237 -0.0007 9 6 6.1551 3.3876 0.9290 10 6 7.4569 3.7896 0.9331 11 6 7.8998 4.7482 -0.0008 12 6 9.2464 5.1674 0.0006 13 1 9.5110 6.1353 -0.3988 14 6 10.2401 4.3288 0.5196 15 7 10.0026 3.0521 0.6756 16 14 11.9052 5.0334 0.9892 17 1 11.8769 5.4658 2.4096 18 1 12.9509 3.9946 0.8088 19 1 12.2114 6.1998 0.1227 20 6 6.9945 5.2825 -0.9383 21 6 5.6912 4.8770 -0.9316 22 9 4.8200 5.3911 -1.8272 23 6 3.5365 2.1224 -0.0049 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.1608 2.3484 -0.0014 28 1 0.7052 4.7459 -0.0019 29 1 3.0509 5.4814 -0.0024 30 1 5.8156 2.6536 1.6446 31 1 8.1485 3.3744 1.6511 32 1 10.6910 2.4712 1.0356 33 1 7.3300 6.0137 -1.6588 34 1 4.3279 1.3874 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241314418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:44 Heat of formation + Delta-G solvation = -25.478643 kcal Electronic energy + Delta-G solvation = -19136.600471 eV Core-core repulsion = 16038.536535 eV Total energy + Delta-G solvation = -3098.063937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.64921 -40.23361 -38.96259 -35.75753 -33.36359 -31.99943 -31.17672 -30.63085 -29.56895 -27.11290 -23.95392 -23.87171 -22.70577 -21.97848 -19.63106 -18.67079 -17.44314 -17.27395 -16.94485 -16.63992 -16.38875 -16.21323 -15.78118 -15.23178 -14.88222 -14.67806 -14.51003 -14.35168 -14.11216 -13.75255 -13.64056 -13.33259 -12.99943 -12.85517 -12.72983 -12.61400 -12.18934 -12.02848 -11.90613 -11.42398 -11.19108 -11.12399 -10.66750 -10.04910 -9.51338 -9.08730 -8.79639 -8.36578 -6.48917 0.10142 0.34085 0.58359 0.87831 0.90291 1.39341 1.50102 1.53096 1.53506 2.16434 2.52008 2.80690 3.49810 3.71346 3.86751 3.99049 4.15529 4.27213 4.30075 4.31458 4.39206 4.55997 4.73226 4.84302 4.87019 4.95005 4.95834 5.06211 5.14573 5.26082 5.43177 5.52270 5.57124 5.75220 5.89408 5.94420 6.04749 6.15087 6.50319 6.73885 6.80615 8.16681 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.003783 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.466704 B = 7399.214192 C = 8187.543285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.162 6.162 3 C -0.085 4.085 4 C -0.145 4.145 5 C -0.092 4.092 6 C -0.134 4.134 7 C 0.000 4.000 8 C -0.232 4.232 9 C -0.057 4.057 10 C -0.191 4.191 11 C 0.110 3.890 12 C -0.477 4.477 13 H 0.086 0.914 14 C 0.038 3.962 15 N -0.804 5.804 16 Si 0.990 3.010 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.257 1.257 20 C -0.284 4.284 21 C 0.134 3.866 22 F -0.157 7.157 23 C -0.118 4.118 24 H 0.127 0.873 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.296 0.704 33 H 0.109 0.891 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 -3.270 1.455 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.079 5.921 3 C -0.197 4.197 4 C -0.169 4.169 5 C -0.111 4.111 6 C -0.154 4.154 7 C -0.002 4.002 8 C -0.234 4.234 9 C -0.075 4.075 10 C -0.210 4.210 11 C 0.107 3.893 12 C -0.504 4.504 13 H 0.104 0.896 14 C -0.181 4.181 15 N -0.428 5.428 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.180 1.180 20 C -0.304 4.304 21 C 0.115 3.885 22 F -0.136 7.136 23 C -0.141 4.141 24 H 0.145 0.855 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.789 -4.564 1.475 13.659 hybrid contribution 0.222 1.398 -0.148 1.423 sum -12.567 -3.166 1.327 13.028 Atomic orbital electron populations 1.23769 0.90881 1.08576 1.06692 1.85612 1.10659 1.02809 1.92987 1.21703 0.96021 0.97378 1.04647 1.21448 0.98801 0.92676 1.03948 1.21261 0.95899 0.96097 0.97861 1.21440 0.93027 0.99055 1.01887 1.18685 0.91862 0.92797 0.96834 1.18244 0.93883 1.06825 1.04492 1.20508 0.92665 0.97613 0.96727 1.21043 0.94791 1.03492 1.01704 1.17747 0.93245 0.89861 0.88403 1.19956 0.91723 1.03392 1.35319 0.89609 1.26905 1.05177 0.94178 0.91825 1.69837 1.37404 1.05348 1.30163 0.85076 0.74975 0.79202 0.79798 1.18308 1.18968 1.18030 1.20742 0.92978 1.11093 1.05599 1.17304 0.86959 0.95304 0.88894 1.91343 1.69625 1.85901 1.66707 1.20846 0.94931 0.94903 1.03448 0.85474 0.88577 0.88718 0.82873 0.82546 0.86512 0.86678 0.86716 0.89259 0.87256 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.15 113.37 1.04 -0.79 16 2 S -0.16 -4.08 22.56 -56.49 -1.27 -5.35 16 3 C -0.09 -2.61 6.11 22.59 0.14 -2.47 16 4 C -0.15 -3.70 9.36 22.48 0.21 -3.49 16 5 C -0.09 -2.46 10.02 22.21 0.22 -2.24 16 6 C -0.13 -4.64 8.85 22.56 0.20 -4.44 16 7 C 0.00 0.00 5.31 -20.06 -0.11 -0.11 16 8 C -0.23 -10.74 5.50 -19.83 -0.11 -10.85 16 9 C -0.06 -2.67 9.43 22.22 0.21 -2.46 16 10 C -0.19 -9.81 8.63 22.47 0.19 -9.62 16 11 C 0.11 5.87 5.57 -21.28 -0.12 5.75 16 12 C -0.48 -24.53 9.03 23.38 0.21 -24.32 16 13 H 0.09 4.23 7.91 -2.91 -0.02 4.21 16 14 C 0.04 1.78 5.13 85.28 0.44 2.21 16 15 N -0.80 -39.57 10.96 21.84 0.24 -39.33 16 16 Si 0.99 35.57 29.60 68.60 2.03 37.60 16 17 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 18 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 C -0.28 -14.42 9.70 22.50 0.22 -14.20 16 21 C 0.13 6.50 7.10 22.32 0.16 6.66 16 22 F -0.16 -7.11 15.85 44.97 0.71 -6.40 16 23 C -0.12 -4.39 9.25 22.68 0.21 -4.18 16 24 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.14 7.74 -2.39 -0.02 1.12 16 26 H 0.09 1.15 7.74 -2.39 -0.02 1.13 16 27 H 0.15 2.72 5.86 -2.91 -0.02 2.70 16 28 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.12 4.05 7.77 -2.91 -0.02 4.03 16 30 H 0.12 4.91 8.03 -2.92 -0.02 4.89 16 31 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 32 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 33 H 0.11 5.30 8.06 -2.91 -0.02 5.27 16 34 H 0.11 4.33 8.04 -2.91 -0.02 4.31 16 Total: -1.00 -58.86 310.24 5.94 -52.92 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.12 Total: 25.13 kcal Atomic # 6 Polarization: -67.67 SS G_CDS: 3.11 Total: -64.55 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.24 Total: -39.33 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.71 Total: -6.40 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.27 Total: -5.35 kcal Total: -58.86 5.94 -52.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.436 kcal (2) G-P(sol) polarization free energy of solvation -58.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds