Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76204 * 102.99625 * 2 1 4 4 C 1.39066 * 120.02365 * 0.02562 * 3 2 1 5 5 C 1.38144 * 120.16816 * 179.97438 * 4 3 2 6 6 C 1.38111 * 120.20240 * 359.97438 * 5 4 3 7 7 C 1.39372 * 120.03626 * 359.97438 * 6 5 4 8 8 C 1.48400 * 120.07973 * 180.02562 * 7 6 5 9 9 C 1.39579 * 120.01682 * 129.99907 * 8 7 6 10 10 C 1.38467 * 120.42367 * 179.97438 * 9 8 7 11 11 C 1.37667 * 120.45025 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.01914 * 0.02562 * 11 10 9 13 13 C 1.41317 * 120.20940 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00079 * 155.03853 * 13 12 11 15 15 C 1.39925 * 120.00018 * 335.04275 * 13 12 11 16 16 N 1.30852 * 120.00031 * 342.29007 * 15 13 12 17 17 Si 1.86802 * 120.00352 * 162.29117 * 15 13 12 18 18 H 1.48498 * 109.47043 * 94.65499 * 17 15 13 19 19 H 1.48497 * 109.47079 * 214.65859 * 17 15 13 20 20 H 1.48497 * 109.46652 * 334.65533 * 17 15 13 21 21 C 1.39065 * 120.01109 * 309.97972 * 8 7 6 22 22 F 1.35094 * 120.22701 * 0.02562 * 21 8 7 23 23 C 1.38750 * 120.01697 * 180.23294 * 3 2 1 24 24 H 1.09003 * 109.47123 * 299.99832 * 1 2 3 25 25 H 1.08995 * 109.47456 * 60.00150 * 1 2 3 26 26 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.91588 * 359.96649 * 4 3 2 28 28 H 1.07997 * 119.89922 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.97596 * 180.02562 * 6 5 4 30 30 H 1.08002 * 119.79205 * 359.95876 * 9 8 7 31 31 H 1.07990 * 119.77615 * 179.72863 * 10 9 8 32 32 H 1.07997 * 119.98708 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00542 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.10899 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1935 2.6657 0.0005 5 6 1.5008 4.0125 0.0011 6 6 2.8190 4.4244 0.0016 7 6 3.8447 3.4808 0.0022 8 6 5.2616 3.9223 0.0033 9 6 6.1586 3.3881 0.9297 10 6 7.4826 3.7936 0.9380 11 6 7.9314 4.7291 0.0332 12 6 7.0427 5.2808 -0.9085 13 6 7.4993 6.2410 -1.8395 14 1 6.9844 6.3684 -2.7802 15 6 8.6184 7.0266 -1.5424 16 7 9.0329 7.1340 -0.3059 17 14 9.5209 7.9222 -2.9110 18 1 9.0064 9.3112 -3.0168 19 1 10.9741 7.9543 -2.6073 20 1 9.2994 7.2129 -4.1967 21 6 5.6961 4.8681 -0.9189 22 9 4.8323 5.3886 -1.8177 23 6 3.5370 2.1231 -0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1610 2.3488 0.0004 28 1 0.7077 4.7456 0.0011 29 1 3.0551 5.4782 0.0024 30 1 5.8179 2.6540 1.6448 31 1 8.1666 3.3767 1.6622 32 1 8.9654 5.0403 0.0466 33 1 9.8084 7.6788 -0.0999 34 1 4.3285 1.3883 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241314599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -13.510915 kcal Electronic energy + Delta-G solvation = -19293.554356 eV Core-core repulsion = 16196.009379 eV Total energy + Delta-G solvation = -3097.544977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.31064 -38.90846 -37.12785 -34.00041 -31.87243 -30.77268 -29.71296 -29.31346 -27.71274 -25.41780 -22.78662 -22.56206 -20.71489 -20.40075 -17.85350 -16.72785 -16.15280 -16.02425 -15.40910 -14.83894 -14.72705 -14.39001 -14.16180 -13.92613 -13.92034 -13.50998 -12.97125 -12.90910 -12.60016 -12.47864 -11.91605 -11.78278 -11.46412 -11.34954 -11.18508 -10.96664 -10.76007 -10.52093 -10.17641 -9.94613 -9.64568 -9.52828 -9.31723 -8.70029 -7.56566 -7.37623 -7.21747 -6.89879 -4.49265 1.39338 1.53896 1.57689 2.41787 2.60743 2.69223 3.01943 3.04967 3.11754 3.84943 4.00992 4.46062 4.89619 4.90249 5.01379 5.12291 5.33168 5.41317 5.48497 5.63670 5.72970 5.82139 6.00843 6.13409 6.25482 6.43122 6.49654 6.65147 6.76317 6.84291 7.03664 7.10705 7.16478 7.42287 7.51228 7.82971 7.88365 7.99231 8.43523 8.65027 8.73473 10.03800 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.003792 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.922218 B = 7382.069226 C = 7771.698939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.130 6.130 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.103 4.103 6 C -0.105 4.105 7 C 0.004 3.996 8 C -0.070 4.070 9 C -0.199 4.199 10 C -0.111 4.111 11 C -0.140 4.140 12 C 0.085 3.915 13 C -0.454 4.454 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.789 5.789 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.008 4.008 22 F -0.157 7.157 23 C -0.089 4.089 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.284 0.716 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 -7.481 1.516 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.111 5.889 3 C -0.199 4.199 4 C -0.169 4.169 5 C -0.123 4.123 6 C -0.125 4.125 7 C 0.002 3.998 8 C -0.071 4.071 9 C -0.219 4.219 10 C -0.130 4.130 11 C -0.160 4.160 12 C 0.082 3.918 13 C -0.483 4.483 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.413 5.413 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.028 4.028 22 F -0.136 7.136 23 C -0.112 4.112 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.713 -8.395 1.626 12.941 hybrid contribution -0.550 1.724 -0.616 1.912 sum -10.263 -6.671 1.009 12.282 Atomic orbital electron populations 1.23615 0.95301 1.06645 1.05510 1.85414 1.05845 1.04261 1.93354 1.21495 0.96576 0.95669 1.06173 1.21020 0.97559 0.93262 1.05100 1.20915 0.96408 0.94992 0.99979 1.21370 0.91916 0.99964 0.99232 1.18860 0.93125 0.92057 0.95788 1.18264 0.91091 0.99182 0.98560 1.20245 0.93567 1.05651 1.02422 1.20664 0.94782 0.98483 0.99037 1.21252 0.99935 0.97282 0.97533 1.17553 0.88481 0.92325 0.93413 1.19510 1.10022 1.15620 1.03103 0.89862 1.25909 0.96277 0.95763 0.96236 1.69809 1.21522 1.31069 1.18948 0.86227 0.78666 0.79794 0.81740 1.19386 1.19856 1.18231 1.17818 0.87879 1.02640 0.94444 1.91277 1.69378 1.86207 1.66731 1.20819 0.93908 0.95452 1.01006 0.89929 0.89906 0.87740 0.86444 0.85969 0.85538 0.88272 0.88417 0.85585 0.90546 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.15 101.05 0.92 -0.30 16 2 S -0.13 -1.67 22.56 -107.50 -2.43 -4.10 16 3 C -0.09 -1.35 6.11 -39.09 -0.24 -1.59 16 4 C -0.15 -2.07 9.36 -39.31 -0.37 -2.44 16 5 C -0.10 -1.54 10.03 -39.66 -0.40 -1.94 16 6 C -0.10 -1.90 8.85 -39.21 -0.35 -2.24 16 7 C 0.00 0.07 5.31 -104.93 -0.56 -0.49 16 8 C -0.07 -1.58 5.47 -104.91 -0.57 -2.15 16 9 C -0.20 -4.31 9.51 -39.00 -0.37 -4.68 16 10 C -0.11 -2.47 10.01 -39.71 -0.40 -2.87 16 11 C -0.14 -3.49 8.69 -38.84 -0.34 -3.83 16 12 C 0.09 2.25 5.57 -106.79 -0.60 1.66 16 13 C -0.45 -11.98 8.78 -37.78 -0.33 -12.32 16 14 H 0.08 2.18 7.74 -52.49 -0.41 1.78 16 15 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 16 N -0.79 -19.64 10.98 55.55 0.61 -19.03 16 17 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 21 C -0.01 -0.19 7.16 -38.29 -0.27 -0.46 16 22 F -0.16 -3.92 15.33 2.25 0.03 -3.88 16 23 C -0.09 -1.58 9.25 -39.03 -0.36 -1.94 16 24 H 0.08 0.66 7.74 -51.92 -0.40 0.25 16 25 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 26 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.12 1.31 5.86 -52.48 -0.31 1.01 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 2.34 7.77 -52.49 -0.41 1.93 16 30 H 0.10 1.91 8.04 -52.49 -0.42 1.49 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.13 3.19 6.17 -52.49 -0.32 2.86 16 33 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 34 H 0.13 2.23 8.04 -52.49 -0.42 1.80 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -27.35 309.80 -9.95 -37.30 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.50 Total: 5.58 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -4.31 Total: -33.80 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.61 Total: -19.03 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.03 Total: -3.88 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.43 Total: -4.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.35 -9.95 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.788 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds