Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76204 * 102.99625 * 2 1 4 4 C 1.39066 * 120.02365 * 0.02562 * 3 2 1 5 5 C 1.38144 * 120.16816 * 179.97438 * 4 3 2 6 6 C 1.38111 * 120.20240 * 359.97438 * 5 4 3 7 7 C 1.39372 * 120.03626 * 359.97438 * 6 5 4 8 8 C 1.48400 * 120.07973 * 180.02562 * 7 6 5 9 9 C 1.39579 * 120.01682 * 129.99907 * 8 7 6 10 10 C 1.38467 * 120.42367 * 179.97438 * 9 8 7 11 11 C 1.37667 * 120.45025 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.01914 * 0.02562 * 11 10 9 13 13 C 1.41317 * 120.20940 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00079 * 155.03853 * 13 12 11 15 15 C 1.39925 * 120.00018 * 335.04275 * 13 12 11 16 16 N 1.30852 * 120.00031 * 342.29007 * 15 13 12 17 17 Si 1.86802 * 120.00352 * 162.29117 * 15 13 12 18 18 H 1.48498 * 109.47043 * 94.65499 * 17 15 13 19 19 H 1.48497 * 109.47079 * 214.65859 * 17 15 13 20 20 H 1.48497 * 109.46652 * 334.65533 * 17 15 13 21 21 C 1.39065 * 120.01109 * 309.97972 * 8 7 6 22 22 F 1.35094 * 120.22701 * 0.02562 * 21 8 7 23 23 C 1.38750 * 120.01697 * 180.23294 * 3 2 1 24 24 H 1.09003 * 109.47123 * 299.99832 * 1 2 3 25 25 H 1.08995 * 109.47456 * 60.00150 * 1 2 3 26 26 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.91588 * 359.96649 * 4 3 2 28 28 H 1.07997 * 119.89922 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.97596 * 180.02562 * 6 5 4 30 30 H 1.08002 * 119.79205 * 359.95876 * 9 8 7 31 31 H 1.07990 * 119.77615 * 179.72863 * 10 9 8 32 32 H 1.07997 * 119.98708 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00542 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.10899 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1935 2.6657 0.0005 5 6 1.5008 4.0125 0.0011 6 6 2.8190 4.4244 0.0016 7 6 3.8447 3.4808 0.0022 8 6 5.2616 3.9223 0.0033 9 6 6.1586 3.3881 0.9297 10 6 7.4826 3.7936 0.9380 11 6 7.9314 4.7291 0.0332 12 6 7.0427 5.2808 -0.9085 13 6 7.4993 6.2410 -1.8395 14 1 6.9844 6.3684 -2.7802 15 6 8.6184 7.0266 -1.5424 16 7 9.0329 7.1340 -0.3059 17 14 9.5209 7.9222 -2.9110 18 1 9.0064 9.3112 -3.0168 19 1 10.9741 7.9543 -2.6073 20 1 9.2994 7.2129 -4.1967 21 6 5.6961 4.8681 -0.9189 22 9 4.8323 5.3886 -1.8177 23 6 3.5370 2.1231 -0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1610 2.3488 0.0004 28 1 0.7077 4.7456 0.0011 29 1 3.0551 5.4782 0.0024 30 1 5.8179 2.6540 1.6448 31 1 8.1666 3.3767 1.6622 32 1 8.9654 5.0403 0.0466 33 1 9.8084 7.6788 -0.0999 34 1 4.3285 1.3883 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241314599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -24.919048 kcal Electronic energy + Delta-G solvation = -19294.049050 eV Core-core repulsion = 16196.009379 eV Total energy + Delta-G solvation = -3098.039671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.24075 -40.29460 -38.85365 -35.80655 -33.37992 -32.05578 -31.52187 -30.31463 -29.07176 -27.30464 -24.29900 -23.89109 -22.48981 -22.01580 -19.46391 -18.25001 -17.86606 -17.36554 -17.14053 -16.44187 -16.23246 -16.00474 -15.71077 -15.29672 -14.79152 -14.68714 -14.63516 -14.38894 -13.85672 -13.74952 -13.55652 -13.35433 -13.16637 -12.84021 -12.71640 -12.46151 -12.31271 -12.19380 -11.74379 -11.42112 -11.18567 -11.13683 -10.73775 -10.12306 -9.43356 -9.04340 -8.73698 -8.36730 -6.45826 0.02355 0.28124 0.56140 0.78527 0.96789 1.35963 1.44970 1.50999 1.52017 2.17341 2.56070 2.73828 3.47877 3.69681 3.92421 3.95549 4.08530 4.29942 4.30676 4.34086 4.43960 4.51339 4.64462 4.75583 4.85548 4.88145 4.99284 5.12417 5.16537 5.22685 5.35182 5.55209 5.57849 5.72247 5.87582 5.97116 5.99521 6.13097 6.51098 6.73583 6.82974 8.22797 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.003792 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.922218 B = 7382.069226 C = 7771.698939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.150 6.150 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.028 4.028 8 C -0.064 4.064 9 C -0.197 4.197 10 C -0.106 4.106 11 C -0.162 4.162 12 C 0.058 3.942 13 C -0.495 4.495 14 H 0.069 0.931 15 C 0.041 3.959 16 N -0.815 5.815 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.257 1.257 20 H -0.262 1.262 21 C -0.042 4.042 22 F -0.165 7.165 23 C -0.101 4.101 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.294 0.706 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -8.715 1.976 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.091 5.909 3 C -0.201 4.201 4 C -0.158 4.158 5 C -0.114 4.114 6 C -0.145 4.145 7 C -0.030 4.030 8 C -0.065 4.065 9 C -0.216 4.216 10 C -0.124 4.124 11 C -0.182 4.182 12 C 0.055 3.945 13 C -0.524 4.524 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.440 5.440 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.181 1.181 20 H -0.186 1.186 21 C -0.062 4.062 22 F -0.144 7.144 23 C -0.124 4.124 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.146 0.854 27 H 0.175 0.825 28 H 0.174 0.826 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.796 -9.648 2.105 15.384 hybrid contribution -0.116 1.936 -0.670 2.052 sum -11.912 -7.712 1.435 14.263 Atomic orbital electron populations 1.23793 0.91043 1.08667 1.06721 1.85554 1.10476 1.01977 1.92887 1.21743 0.95926 0.97795 1.04677 1.21489 0.99128 0.92492 1.02651 1.21264 0.95630 0.96393 0.98128 1.21373 0.93345 0.98980 1.00843 1.18807 0.91826 0.93460 0.98875 1.18623 0.93175 0.97588 0.97135 1.20624 0.93223 1.05507 1.02252 1.21005 0.95678 0.97214 0.98530 1.21243 0.99439 0.98792 0.98710 1.17917 0.89428 0.92946 0.94202 1.19659 1.12088 1.17484 1.03136 0.91256 1.26709 0.96201 0.95990 0.98647 1.69829 1.22080 1.31607 1.20462 0.85167 0.77931 0.78384 0.78139 1.18663 1.18095 1.18604 1.18115 0.87835 1.04519 0.95723 1.91230 1.69453 1.86548 1.67137 1.20792 0.95302 0.94380 1.01959 0.88525 0.88769 0.85375 0.82524 0.82578 0.87188 0.85530 0.85254 0.86566 0.89509 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.15 113.37 1.04 -0.65 16 2 S -0.15 -3.46 22.56 -56.49 -1.27 -4.73 16 3 C -0.09 -2.58 6.11 22.59 0.14 -2.44 16 4 C -0.13 -3.33 9.36 22.45 0.21 -3.12 16 5 C -0.09 -2.61 10.03 22.22 0.22 -2.38 16 6 C -0.12 -4.55 8.85 22.51 0.20 -4.35 16 7 C -0.03 -1.12 5.31 -20.06 -0.11 -1.23 16 8 C -0.06 -2.99 5.47 -20.05 -0.11 -3.10 16 9 C -0.20 -8.56 9.51 22.65 0.22 -8.34 16 10 C -0.11 -4.75 10.01 22.19 0.22 -4.53 16 11 C -0.16 -8.40 8.69 22.75 0.20 -8.21 16 12 C 0.06 3.24 5.57 -21.27 -0.12 3.12 16 13 C -0.49 -27.67 8.78 23.44 0.21 -27.47 16 14 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 15 C 0.04 2.06 5.14 85.25 0.44 2.50 16 16 N -0.81 -41.73 10.98 21.82 0.24 -41.49 16 17 Si 0.98 38.29 29.60 68.60 2.03 40.32 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.04 -2.22 7.16 23.11 0.17 -2.06 16 22 F -0.16 -8.75 15.33 44.97 0.69 -8.06 16 23 C -0.10 -3.57 9.25 22.63 0.21 -3.36 16 24 H 0.10 1.01 7.74 -2.39 -0.02 1.00 16 25 H 0.09 1.04 7.74 -2.39 -0.02 1.02 16 26 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.16 2.64 5.86 -2.91 -0.02 2.62 16 28 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.11 4.26 7.77 -2.91 -0.02 4.23 16 30 H 0.13 4.75 8.04 -2.91 -0.02 4.73 16 31 H 0.13 4.86 8.06 -2.92 -0.02 4.84 16 32 H 0.12 6.14 6.17 -2.91 -0.02 6.12 16 33 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 34 H 0.12 4.31 8.04 -2.91 -0.02 4.29 16 Total: -1.00 -63.14 309.80 5.93 -57.21 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.12 Total: 22.37 kcal Atomic # 6 Polarization: -68.75 SS G_CDS: 3.13 Total: -65.62 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.24 Total: -41.49 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.69 Total: -8.06 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.27 Total: -4.73 kcal Total: -63.14 5.93 -57.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.290 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds