Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42097 * 109.47055 * 2 1 4 4 C 1.76197 * 103.00100 * 250.94276 * 2 1 3 5 5 C 1.38031 * 120.06454 * 95.30040 * 4 2 1 6 6 C 1.38312 * 120.12694 * 180.31866 * 5 4 2 7 7 C 1.38366 * 120.25306 * 359.67986 * 6 5 4 8 8 C 1.37980 * 120.12634 * 359.97438 * 7 6 5 9 9 C 1.39367 * 120.06543 * 274.99848 * 4 2 1 10 10 C 1.48304 * 120.12821 * 359.97438 * 9 4 2 11 11 C 1.40030 * 119.98316 * 309.25828 * 10 9 4 12 12 N 1.32175 * 120.29668 * 180.02562 * 11 10 9 13 13 C 1.31884 * 120.28211 * 359.72808 * 12 11 10 14 14 C 1.40817 * 119.96452 * 0.52432 * 13 12 11 15 15 C 1.41331 * 120.14711 * 179.75537 * 14 13 12 16 16 H 1.07997 * 120.00088 * 9.63681 * 15 14 13 17 17 C 1.40054 * 119.99961 * 189.63818 * 15 14 13 18 18 N 1.30728 * 119.99605 * 196.26701 * 17 15 14 19 19 Si 1.86796 * 120.00093 * 16.26607 * 17 15 14 20 20 H 1.48496 * 109.46917 * 270.00021 * 19 17 15 21 21 H 1.48499 * 109.46893 * 30.00274 * 19 17 15 22 22 H 1.48503 * 109.46902 * 149.99918 * 19 17 15 23 23 N 1.32521 * 119.98661 * 129.27817 * 10 9 4 24 24 H 1.09004 * 109.47122 * 169.05127 * 1 2 3 25 25 H 1.08999 * 109.47551 * 289.05770 * 1 2 3 26 26 H 1.09002 * 109.47375 * 49.05602 * 1 2 3 27 27 H 1.07993 * 119.93524 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.87575 * 179.70121 * 6 5 4 29 29 H 1.07997 * 119.93545 * 180.02562 * 7 6 5 30 30 H 1.07999 * 120.06142 * 180.02562 * 8 7 6 31 31 H 1.08005 * 119.85059 * 0.03718 * 11 10 9 32 32 H 1.07997 * 120.01700 * 180.28241 * 13 12 11 33 33 H 0.97002 * 120.00462 * 354.91693 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2103 -0.5606 -1.6227 5 6 2.4734 0.3519 -2.6245 6 6 2.7783 -0.0866 -3.9003 7 6 2.8279 -1.4411 -4.1787 8 6 2.5737 -2.3624 -3.1835 9 6 2.2650 -1.9261 -1.8958 10 6 1.9905 -2.9115 -0.8220 11 6 2.6554 -2.8115 0.4063 12 7 2.4158 -3.6866 1.3674 13 6 1.5444 -4.6586 1.1798 14 6 0.8732 -4.7732 -0.0529 15 6 -0.0575 -5.8164 -0.2600 16 1 -0.3724 -6.4318 0.5698 17 6 -0.5715 -6.0522 -1.5413 18 7 -1.6458 -6.7819 -1.6904 19 14 0.2780 -5.3238 -3.0370 20 1 -0.2915 -3.9831 -3.3257 21 1 1.7326 -5.1961 -2.7667 22 1 0.0682 -6.2133 -4.2075 23 7 1.1164 -3.8866 -1.0255 24 1 -0.3633 -1.0090 -0.1952 25 1 -0.3634 0.3355 0.9713 26 1 -0.3634 0.6735 -0.7762 27 1 2.4357 1.4102 -2.4130 28 1 2.9787 0.6308 -4.6822 29 1 3.0668 -1.7778 -5.1766 30 1 2.6131 -3.4194 -3.4018 31 1 3.3670 -2.0155 0.5692 32 1 1.3486 -5.3687 1.9696 33 1 -2.0446 -7.2208 -0.9228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241335972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = -4.192419 kcal Electronic energy + Delta-G solvation = -20278.399382 eV Core-core repulsion = 17201.178447 eV Total energy + Delta-G solvation = -3077.220935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41494 -39.83488 -36.95384 -36.15478 -34.77955 -33.54241 -32.15947 -30.77160 -29.82528 -27.81093 -25.52162 -24.29641 -23.43819 -22.34225 -20.51769 -19.20489 -18.21048 -17.79083 -17.39200 -16.95729 -16.43136 -15.99278 -15.85884 -15.62200 -15.12562 -14.96429 -14.71093 -14.54353 -14.28161 -13.88337 -13.69716 -13.41605 -13.10981 -13.07921 -12.80744 -12.73513 -12.26755 -11.98307 -11.64834 -11.44206 -11.26642 -10.99106 -10.41291 -10.30869 -9.78414 -9.65913 -9.31504 -9.11509 -6.88149 -0.34947 0.04017 0.52707 0.78527 0.83555 1.52088 1.60480 1.63336 1.90982 2.32046 2.47890 2.64415 2.79769 3.22224 3.46562 3.83571 3.95954 4.03373 4.12596 4.14007 4.22223 4.29410 4.43068 4.47210 4.66939 4.79046 4.92118 4.93902 4.96650 5.18468 5.31155 5.33952 5.36641 5.47257 5.83874 5.92521 6.14102 6.46377 6.97750 7.45034 7.86570 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.007537 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.993930 B = 3714.343797 C = 4593.875418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.357 4.643 3 O -0.907 6.907 4 C -0.453 4.453 5 C -0.069 4.069 6 C -0.125 4.125 7 C -0.078 4.078 8 C -0.131 4.131 9 C 0.033 3.967 10 C 0.139 3.861 11 C -0.087 4.087 12 N -0.412 5.412 13 C -0.037 4.037 14 C 0.192 3.808 15 C -0.478 4.478 16 H 0.087 0.913 17 C 0.026 3.974 18 N -0.811 5.811 19 Si 1.152 2.848 20 H -0.284 1.284 21 H -0.271 1.271 22 H -0.318 1.318 23 N -0.541 5.541 24 H 0.104 0.896 25 H 0.126 0.874 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.125 0.875 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 7.903 -2.169 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.557 4.443 3 O -0.903 6.903 4 C -0.551 4.551 5 C -0.088 4.088 6 C -0.144 4.144 7 C -0.096 4.096 8 C -0.151 4.151 9 C 0.030 3.970 10 C -0.005 4.005 11 C -0.244 4.244 12 N -0.123 5.123 13 C -0.208 4.208 14 C 0.066 3.934 15 C -0.511 4.511 16 H 0.105 0.895 17 C -0.195 4.195 18 N -0.433 5.433 19 Si 0.982 3.018 20 H -0.210 1.210 21 H -0.198 1.198 22 H -0.250 1.250 23 N -0.263 5.263 24 H 0.123 0.877 25 H 0.144 0.856 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.178 0.822 29 H 0.182 0.818 30 H 0.143 0.857 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.520 8.279 -2.943 10.941 hybrid contribution -1.323 0.509 0.202 1.432 sum 5.197 8.788 -2.741 10.571 Atomic orbital electron populations 1.27664 1.21368 1.07820 1.08196 1.70273 0.86380 0.96010 0.91634 1.92896 1.74821 1.39892 1.82651 1.27515 1.12518 0.97741 1.17284 1.21156 0.95392 0.99141 0.93141 1.21646 0.99575 0.96527 0.96690 1.21668 0.95191 0.92743 0.99982 1.21646 0.99969 1.00948 0.92494 1.18159 0.95902 0.90058 0.92837 1.20742 0.93449 0.92703 0.93610 1.23076 1.07303 1.03659 0.90395 1.67869 1.12117 1.01312 1.30967 1.23469 0.98796 1.00197 0.98318 1.19498 0.92017 0.91798 0.90075 1.20766 1.20402 1.12502 0.97447 0.89459 1.28217 0.92781 0.93372 1.05120 1.70604 1.13290 1.21843 1.37533 0.82148 0.76237 0.73993 0.69448 1.21043 1.19842 1.24977 1.67722 1.20288 1.05938 1.32336 0.87697 0.85585 0.90208 0.85396 0.82185 0.81824 0.85702 0.81057 0.82258 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -14.01 10.70 113.37 1.21 -12.80 16 2 S 1.36 40.32 11.00 -56.49 -0.62 39.70 16 3 O -0.91 -33.61 16.78 -148.98 -2.50 -36.11 16 4 C -0.45 -14.44 5.61 22.49 0.13 -14.31 16 5 C -0.07 -2.02 9.44 22.24 0.21 -1.81 16 6 C -0.13 -2.98 10.04 22.32 0.22 -2.76 16 7 C -0.08 -1.93 10.03 22.24 0.22 -1.70 16 8 C -0.13 -4.20 9.62 22.49 0.22 -3.98 16 9 C 0.03 1.15 5.60 -20.04 -0.11 1.04 16 10 C 0.14 5.34 5.86 42.15 0.25 5.59 16 11 C -0.09 -3.05 9.26 85.08 0.79 -2.26 16 12 N -0.41 -15.63 10.47 -192.06 -2.01 -17.64 16 13 C -0.04 -1.52 10.97 85.32 0.94 -0.58 16 14 C 0.19 8.73 6.24 40.23 0.25 8.98 16 15 C -0.48 -23.11 9.53 23.47 0.22 -22.89 16 16 H 0.09 4.16 8.06 -2.91 -0.02 4.14 16 17 C 0.03 1.28 5.51 85.30 0.47 1.75 16 18 N -0.81 -40.80 13.65 21.84 0.30 -40.51 16 19 Si 1.15 51.13 24.99 68.60 1.71 52.85 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.66 5.70 99.48 0.57 -11.09 16 22 H -0.32 -13.85 7.11 99.48 0.71 -13.15 16 23 N -0.54 -23.98 5.22 -177.65 -0.93 -24.91 16 24 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 25 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.13 3.73 7.33 -2.91 -0.02 3.71 16 28 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.13 4.16 6.19 -2.91 -0.02 4.14 16 31 H 0.17 4.84 7.10 -2.91 -0.02 4.82 16 32 H 0.16 5.82 8.06 -2.91 -0.02 5.80 16 33 H 0.29 13.90 8.73 -92.71 -0.81 13.10 16 Total: -1.00 -61.02 296.44 1.93 -59.09 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.96 Total: 13.26 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 5.02 Total: -45.73 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.64 Total: -83.06 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -2.50 Total: -36.11 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.71 Total: 52.85 kcal Atomic # 16 Polarization: 40.32 SS G_CDS: -0.62 Total: 39.70 kcal Total: -61.02 1.93 -59.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241335972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.901 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds