Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42102 * 109.47002 * 2 1 4 4 C 1.76202 * 102.99990 * 109.05428 * 2 1 3 5 5 C 1.37941 * 120.07182 * 93.19706 * 4 2 1 6 6 C 1.38392 * 120.14386 * 180.27747 * 5 4 2 7 7 C 1.38427 * 120.29908 * 359.69377 * 6 5 4 8 8 C 1.37894 * 120.14981 * 0.02562 * 7 6 5 9 9 C 1.39631 * 120.07668 * 272.89810 * 4 2 1 10 10 C 1.47933 * 120.14569 * 0.02562 * 9 4 2 11 11 C 1.40428 * 120.78857 * 66.50933 * 10 9 4 12 12 N 1.31584 * 119.09546 * 179.97438 * 11 10 9 13 13 C 1.33641 * 120.82751 * 359.97438 * 12 11 10 14 14 C 1.41102 * 119.13277 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.40140 * 120.00012 * 180.02562 * 14 13 12 17 17 N 1.30666 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47196 * 59.99878 * 18 16 14 20 20 H 1.48503 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47319 * 300.00071 * 18 16 14 22 22 N 1.33638 * 121.73847 * 0.02562 * 13 12 11 23 23 C 1.31589 * 120.82910 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.46789 * 318.80755 * 1 2 3 25 25 H 1.09002 * 109.47166 * 78.80085 * 1 2 3 26 26 H 1.08994 * 109.47396 * 198.80464 * 1 2 3 27 27 H 1.08005 * 119.93210 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.84914 * 179.72186 * 6 5 4 29 29 H 1.08003 * 119.92128 * 180.02562 * 7 6 5 30 30 H 1.08001 * 120.07637 * 180.02562 * 8 7 6 31 31 H 1.08002 * 120.45233 * 0.27180 * 11 10 9 32 32 H 0.96998 * 120.00089 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.45654 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4307 -1.9021 1.8561 6 6 2.7365 -2.3446 3.1312 7 6 2.8296 -1.4450 4.1791 8 6 2.6174 -0.1005 3.9586 9 6 2.3083 0.3531 2.6742 10 6 2.0792 1.7940 2.4301 11 6 0.8091 2.2680 2.0637 12 7 0.6427 3.5565 1.8552 13 6 1.6629 4.4093 1.9886 14 6 1.4442 5.7838 1.7569 15 1 0.4620 6.1345 1.4760 16 6 2.5013 6.6940 1.8911 17 7 3.6894 6.2699 2.2313 18 14 2.2118 8.5136 1.5835 19 1 1.1824 9.0176 2.5278 20 1 3.4797 9.2585 1.7905 21 1 1.7430 8.7115 0.1885 22 7 2.8850 3.9946 2.3358 23 6 3.1263 2.7206 2.5604 24 1 -0.3633 0.7734 0.6768 25 1 -0.3633 0.1996 -1.0081 26 1 -0.3634 -0.9727 0.3312 27 1 2.3597 -2.6093 1.0429 28 1 2.9037 -3.3967 3.3094 29 1 3.0690 -1.7970 5.1717 30 1 2.6907 0.6005 4.7770 31 1 -0.0209 1.5849 1.9593 32 1 4.4212 6.8998 2.3239 33 1 4.1163 2.3921 2.8402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241342247.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = 48.366399 kcal Electronic energy + Delta-G solvation = -20123.918420 eV Core-core repulsion = 17048.976606 eV Total energy + Delta-G solvation = -3074.941814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21488 -38.10245 -35.13162 -33.82053 -32.04377 -31.68015 -30.77310 -28.94150 -28.49053 -26.00905 -22.91788 -22.64159 -22.17589 -20.69926 -17.89053 -17.59111 -16.28977 -15.96258 -15.32869 -15.23036 -14.75520 -14.57271 -14.24631 -13.90686 -13.38343 -13.26688 -12.79576 -12.51892 -12.41184 -12.28216 -11.98221 -11.63324 -11.29182 -11.21152 -11.09481 -11.08727 -10.65874 -10.27249 -9.75151 -9.41606 -9.05053 -8.98588 -8.89886 -8.63282 -8.01271 -7.54077 -7.18593 -6.47968 -4.64673 1.25315 1.63987 2.33663 2.67509 3.06335 3.09315 3.09781 3.12365 3.17672 3.90637 3.99314 4.45473 4.68683 5.09045 5.23946 5.29927 5.40205 5.50153 5.68502 5.73826 5.80023 5.97526 6.04599 6.14933 6.31378 6.35209 6.47612 6.55026 6.68090 6.80115 6.98198 7.11381 7.26118 7.33541 7.73267 8.19722 8.57158 8.63652 9.18524 10.17241 10.36033 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.005096 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.663746 B = 5493.611327 C = 6063.880364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.510 4.510 2 S 1.309 4.691 3 O -0.813 6.813 4 C -0.468 4.468 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.086 4.086 8 C -0.140 4.140 9 C 0.090 3.910 10 C -0.315 4.315 11 C 0.182 3.818 12 N -0.588 5.588 13 C 0.395 3.605 14 C -0.396 4.396 15 H 0.091 0.909 16 C 0.065 3.935 17 N -0.707 5.707 18 Si 0.920 3.080 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.263 1.263 22 N -0.503 5.503 23 C 0.196 3.804 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.276 0.724 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -16.004 -2.107 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 1.504 4.496 3 O -0.808 6.808 4 C -0.564 4.564 5 C -0.065 4.065 6 C -0.182 4.182 7 C -0.105 4.105 8 C -0.159 4.159 9 C 0.087 3.913 10 C -0.325 4.325 11 C 0.008 3.992 12 N -0.306 5.306 13 C 0.160 3.840 14 C -0.430 4.430 15 H 0.109 0.891 16 C -0.162 4.162 17 N -0.328 5.328 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.187 1.187 22 N -0.218 5.218 23 C 0.020 3.980 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.239 -14.491 -2.984 14.797 hybrid contribution -0.723 0.810 1.840 2.136 sum -0.962 -13.681 -1.144 13.763 Atomic orbital electron populations 1.28086 1.23696 1.07342 1.07390 1.69290 0.86350 1.01475 0.92485 1.93393 1.71617 1.35498 1.80313 1.27966 1.13177 0.99014 1.16259 1.20669 0.95594 0.93480 0.96716 1.21123 1.04453 0.99132 0.93491 1.21169 0.97192 0.93445 0.98660 1.21518 1.02071 0.95384 0.96955 1.18702 0.89057 0.92292 0.91265 1.19545 0.98327 0.91778 1.22850 1.22419 0.93182 0.92843 0.90787 1.68526 1.35548 1.02756 1.23759 1.19834 0.82874 0.93499 0.87765 1.19304 0.97057 0.88846 1.37830 0.89081 1.26148 0.94540 1.01758 0.93794 1.70134 1.00462 1.36050 1.26148 0.86190 0.78704 0.80637 0.80141 1.18746 1.20056 1.18717 1.69280 1.22047 1.13303 1.17218 1.22684 0.95729 0.89447 0.90171 0.88973 0.88179 0.88119 0.85493 0.86415 0.86548 0.86269 0.86339 0.91299 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -6.68 10.55 101.05 1.07 -5.62 16 2 S 1.31 18.49 13.66 -107.50 -1.47 17.02 16 3 O -0.81 -18.25 13.98 -35.23 -0.49 -18.75 16 4 C -0.47 -7.24 5.62 -39.17 -0.22 -7.46 16 5 C -0.05 -0.53 9.74 -39.63 -0.39 -0.92 16 6 C -0.16 -1.92 10.04 -39.46 -0.40 -2.32 16 7 C -0.09 -1.16 10.03 -39.64 -0.40 -1.56 16 8 C -0.14 -2.37 9.77 -39.17 -0.38 -2.75 16 9 C 0.09 1.72 5.35 -104.87 -0.56 1.16 16 10 C -0.31 -7.49 3.12 -104.28 -0.33 -7.82 16 11 C 0.18 4.56 8.59 -16.83 -0.14 4.41 16 12 N -0.59 -16.87 10.34 -12.41 -0.13 -17.00 16 13 C 0.40 12.02 7.35 -158.17 -1.16 10.86 16 14 C -0.40 -11.55 9.35 -37.78 -0.35 -11.90 16 15 H 0.09 2.54 7.85 -52.49 -0.41 2.13 16 16 C 0.06 1.73 5.50 -17.33 -0.10 1.64 16 17 N -0.71 -19.60 11.40 55.56 0.63 -18.97 16 18 Si 0.92 19.40 29.56 -169.99 -5.02 14.37 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 N -0.50 -15.04 7.83 -12.41 -0.10 -15.14 16 23 C 0.20 5.19 10.93 -16.83 -0.18 5.00 16 24 H 0.09 1.54 4.63 -51.92 -0.24 1.30 16 25 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.12 2.62 5.41 -52.49 -0.28 2.34 16 32 H 0.28 6.86 8.29 -40.82 -0.34 6.52 16 33 H 0.12 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -38.21 296.79 -8.68 -46.89 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.03 Total: 4.37 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -3.55 Total: -17.27 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.41 Total: -51.11 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.49 Total: -18.75 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 18.49 SS G_CDS: -1.47 Total: 17.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -38.21 -8.68 -46.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241342247.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.258 kcal (2) G-P(sol) polarization free energy of solvation -38.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds