Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42102 * 109.47002 * 2 1 4 4 C 1.76202 * 102.99990 * 109.05428 * 2 1 3 5 5 C 1.37941 * 120.07182 * 93.19706 * 4 2 1 6 6 C 1.38392 * 120.14386 * 180.27747 * 5 4 2 7 7 C 1.38427 * 120.29908 * 359.69377 * 6 5 4 8 8 C 1.37894 * 120.14981 * 0.02562 * 7 6 5 9 9 C 1.39631 * 120.07668 * 272.89810 * 4 2 1 10 10 C 1.47933 * 120.14569 * 0.02562 * 9 4 2 11 11 C 1.40428 * 120.78857 * 66.50933 * 10 9 4 12 12 N 1.31584 * 119.09546 * 179.97438 * 11 10 9 13 13 C 1.33641 * 120.82751 * 359.97438 * 12 11 10 14 14 C 1.41102 * 119.13277 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.40140 * 120.00012 * 180.02562 * 14 13 12 17 17 N 1.30666 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47196 * 59.99878 * 18 16 14 20 20 H 1.48503 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47319 * 300.00071 * 18 16 14 22 22 N 1.33638 * 121.73847 * 0.02562 * 13 12 11 23 23 C 1.31589 * 120.82910 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.46789 * 318.80755 * 1 2 3 25 25 H 1.09002 * 109.47166 * 78.80085 * 1 2 3 26 26 H 1.08994 * 109.47396 * 198.80464 * 1 2 3 27 27 H 1.08005 * 119.93210 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.84914 * 179.72186 * 6 5 4 29 29 H 1.08003 * 119.92128 * 180.02562 * 7 6 5 30 30 H 1.08001 * 120.07637 * 180.02562 * 8 7 6 31 31 H 1.08002 * 120.45233 * 0.27180 * 11 10 9 32 32 H 0.96998 * 120.00089 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.45654 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4307 -1.9021 1.8561 6 6 2.7365 -2.3446 3.1312 7 6 2.8296 -1.4450 4.1791 8 6 2.6174 -0.1005 3.9586 9 6 2.3083 0.3531 2.6742 10 6 2.0792 1.7940 2.4301 11 6 0.8091 2.2680 2.0637 12 7 0.6427 3.5565 1.8552 13 6 1.6629 4.4093 1.9886 14 6 1.4442 5.7838 1.7569 15 1 0.4620 6.1345 1.4760 16 6 2.5013 6.6940 1.8911 17 7 3.6894 6.2699 2.2313 18 14 2.2118 8.5136 1.5835 19 1 1.1824 9.0176 2.5278 20 1 3.4797 9.2585 1.7905 21 1 1.7430 8.7115 0.1885 22 7 2.8850 3.9946 2.3358 23 6 3.1263 2.7206 2.5604 24 1 -0.3633 0.7734 0.6768 25 1 -0.3633 0.1996 -1.0081 26 1 -0.3634 -0.9727 0.3312 27 1 2.3597 -2.6093 1.0429 28 1 2.9037 -3.3967 3.3094 29 1 3.0690 -1.7970 5.1717 30 1 2.6907 0.6005 4.7770 31 1 -0.0209 1.5849 1.9593 32 1 4.4212 6.8998 2.3239 33 1 4.1163 2.3921 2.8402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241342247.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = 20.050314 kcal Electronic energy + Delta-G solvation = -20125.146297 eV Core-core repulsion = 17048.976606 eV Total energy + Delta-G solvation = -3076.169691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01010 -39.54267 -36.65532 -35.77135 -33.88520 -33.54729 -31.91525 -30.65766 -29.63792 -27.87400 -24.77575 -24.35940 -23.48590 -22.27082 -19.91100 -18.80596 -18.01674 -17.53408 -17.12079 -16.55692 -16.34726 -16.13932 -15.53300 -15.11895 -14.88676 -14.72290 -14.49038 -14.35893 -13.84146 -13.60187 -13.33904 -13.20141 -12.93125 -12.81825 -12.74122 -12.42167 -12.23275 -12.00239 -11.36444 -11.22959 -11.10154 -10.89069 -10.21337 -9.92111 -9.56495 -9.18582 -9.13891 -8.47518 -6.76304 0.07308 0.41061 0.78521 1.02867 1.20595 1.32648 1.48388 1.48678 1.98098 2.15172 2.68203 2.84507 3.23869 3.66491 3.85190 3.94904 4.00791 4.17128 4.23120 4.36030 4.43462 4.55125 4.61782 4.70889 4.91545 4.98800 5.10043 5.17018 5.20352 5.30765 5.43122 5.58974 5.64556 5.78699 6.06162 6.16035 6.48568 6.55630 7.11226 8.16141 8.32003 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.005096 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.663746 B = 5493.611327 C = 6063.880364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.505 4.505 2 S 1.372 4.628 3 O -0.906 6.906 4 C -0.473 4.473 5 C -0.031 4.031 6 C -0.144 4.144 7 C -0.083 4.083 8 C -0.159 4.159 9 C 0.036 3.964 10 C -0.277 4.277 11 C 0.165 3.835 12 N -0.616 5.616 13 C 0.363 3.637 14 C -0.442 4.442 15 H 0.088 0.912 16 C 0.020 3.980 17 N -0.749 5.749 18 Si 1.006 2.994 19 H -0.254 1.254 20 H -0.258 1.258 21 H -0.258 1.258 22 N -0.534 5.534 23 C 0.163 3.837 24 H 0.054 0.946 25 H 0.117 0.883 26 H 0.143 0.857 27 H 0.187 0.813 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.285 0.715 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -19.873 -2.389 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 1.570 4.430 3 O -0.901 6.901 4 C -0.570 4.570 5 C -0.050 4.050 6 C -0.163 4.163 7 C -0.101 4.101 8 C -0.178 4.178 9 C 0.034 3.966 10 C -0.287 4.287 11 C -0.007 4.007 12 N -0.335 5.335 13 C 0.126 3.874 14 C -0.477 4.477 15 H 0.106 0.894 16 C -0.203 4.203 17 N -0.371 5.371 18 Si 0.824 3.176 19 H -0.178 1.178 20 H -0.182 1.182 21 H -0.182 1.182 22 N -0.251 5.251 23 C -0.011 4.011 24 H 0.073 0.927 25 H 0.136 0.864 26 H 0.162 0.838 27 H 0.205 0.795 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.119 0.881 31 H 0.164 0.836 32 H 0.096 0.904 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.512 -18.440 -3.254 18.732 hybrid contribution -0.675 1.510 1.979 2.579 sum -1.187 -16.930 -1.275 17.019 Atomic orbital electron populations 1.28029 1.21929 1.08454 1.07809 1.68061 0.86001 0.97999 0.90896 1.93263 1.74780 1.39756 1.82319 1.28009 1.13578 1.00392 1.15027 1.21366 0.92513 0.92301 0.98798 1.21760 1.00897 1.01099 0.92504 1.21537 0.95793 0.91785 1.01024 1.21460 1.03490 0.97278 0.95589 1.18599 0.94076 0.90121 0.93801 1.19845 0.96535 0.94459 1.17839 1.22962 0.94853 0.92261 0.90615 1.68501 1.35643 1.04315 1.25023 1.20267 0.83513 0.94581 0.88997 1.19625 0.98030 0.89455 1.40596 0.89423 1.27208 0.93521 1.06979 0.92613 1.70219 1.01543 1.38316 1.27054 0.84936 0.79338 0.73248 0.80075 1.17835 1.18158 1.18237 1.69190 1.22345 1.15107 1.18477 1.23047 0.97154 0.89657 0.91207 0.92681 0.86403 0.83810 0.79545 0.81618 0.83603 0.88075 0.83648 0.90440 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -12.01 10.55 113.37 1.20 -10.81 16 2 S 1.37 36.66 13.66 -56.49 -0.77 35.89 16 3 O -0.91 -42.13 13.98 -148.98 -2.08 -44.21 16 4 C -0.47 -13.35 5.62 22.54 0.13 -13.23 16 5 C -0.03 -0.54 9.74 22.24 0.22 -0.32 16 6 C -0.14 -2.44 10.04 22.35 0.22 -2.21 16 7 C -0.08 -1.91 10.03 22.23 0.22 -1.68 16 8 C -0.16 -5.25 9.77 22.53 0.22 -5.03 16 9 C 0.04 1.39 5.35 -20.03 -0.11 1.28 16 10 C -0.28 -13.84 3.12 -19.64 -0.06 -13.90 16 11 C 0.17 8.70 8.59 85.26 0.73 9.43 16 12 N -0.62 -37.73 10.34 -193.17 -2.00 -39.72 16 13 C 0.36 23.75 7.35 134.92 0.99 24.75 16 14 C -0.44 -27.58 9.35 23.44 0.22 -27.36 16 15 H 0.09 5.25 7.85 -2.91 -0.02 5.23 16 16 C 0.02 1.11 5.50 85.33 0.47 1.58 16 17 N -0.75 -43.91 11.40 21.85 0.25 -43.66 16 18 Si 1.01 41.29 29.56 68.60 2.03 43.32 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 N -0.53 -34.39 7.83 -193.17 -1.51 -35.91 16 23 C 0.16 9.26 10.93 85.26 0.93 10.19 16 24 H 0.05 1.80 4.63 -2.39 -0.01 1.79 16 25 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 28 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.10 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.15 6.64 5.41 -2.91 -0.02 6.63 16 32 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 33 H 0.13 6.79 8.06 -2.91 -0.02 6.77 16 Total: -1.00 -94.50 296.79 2.44 -92.06 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.15 Total: 19.56 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 5.38 Total: -27.33 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -3.26 Total: -119.29 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.08 Total: -44.21 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 36.66 SS G_CDS: -0.77 Total: 35.89 kcal Total: -94.50 2.44 -92.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241342247.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.111 kcal (2) G-P(sol) polarization free energy of solvation -94.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds