Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 109.47083 * 2 1 4 4 C 1.76198 * 103.00021 * 250.94377 * 2 1 3 5 5 C 1.38327 * 119.87487 * 90.00215 * 4 2 1 6 6 C 1.37996 * 120.12837 * 179.97438 * 5 4 2 7 7 C 1.39388 * 119.87361 * 359.97438 * 6 5 4 8 8 C 1.48304 * 120.13105 * 179.97438 * 7 6 5 9 9 C 1.40035 * 119.97995 * 4.98214 * 8 7 6 10 10 N 1.32184 * 120.29106 * 180.02562 * 9 8 7 11 11 C 1.31886 * 120.28341 * 359.72096 * 10 9 8 12 12 C 1.40826 * 119.96587 * 0.53159 * 11 10 9 13 13 C 1.41327 * 120.14584 * 179.74781 * 12 11 10 14 14 H 1.07999 * 120.00108 * 16.82912 * 13 12 11 15 15 C 1.40046 * 119.99827 * 196.82890 * 13 12 11 16 16 N 1.30738 * 119.99859 * 189.47454 * 15 13 12 17 17 Si 1.86803 * 120.00370 * 9.47432 * 15 13 12 18 18 H 1.48493 * 109.47407 * 270.00281 * 17 15 13 19 19 H 1.48505 * 109.46670 * 30.00223 * 17 15 13 20 20 H 1.48499 * 109.47153 * 149.99777 * 17 15 13 21 21 N 1.32514 * 119.98680 * 185.00278 * 8 7 6 22 22 C 1.39398 * 119.74714 * 0.27585 * 7 6 5 23 23 C 1.38001 * 119.87148 * 359.47323 * 22 7 6 24 24 H 1.09002 * 109.47295 * 169.05736 * 1 2 3 25 25 H 1.09008 * 109.47577 * 289.06041 * 1 2 3 26 26 H 1.09004 * 109.47385 * 49.05606 * 1 2 3 27 27 H 1.08001 * 119.93683 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.06481 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.85499 * 359.97438 * 9 8 7 30 30 H 1.07997 * 120.01418 * 180.27964 * 11 10 9 31 31 H 0.96996 * 119.99689 * 354.93295 * 16 15 13 32 32 H 1.08003 * 120.06736 * 179.72331 * 22 7 6 33 33 H 1.07996 * 119.93950 * 180.25395 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2103 -0.5605 -1.6227 5 6 2.3654 0.3540 -2.6489 6 6 2.6763 -0.0792 -3.9217 7 6 2.8347 -1.4412 -4.1722 8 6 3.1683 -1.9131 -5.5380 9 6 3.4274 -0.9859 -6.5549 10 7 3.7249 -1.3996 -7.7745 11 6 3.7856 -2.6895 -8.0429 12 6 3.5219 -3.6318 -7.0302 13 6 3.5807 -5.0149 -7.3149 14 1 4.0813 -5.3618 -8.2068 15 6 2.9899 -5.9355 -6.4404 16 7 3.1998 -7.2160 -6.5999 17 14 1.9020 -5.3340 -5.0461 18 1 2.7320 -5.0956 -3.8381 19 1 1.2374 -4.0681 -5.4478 20 1 0.8716 -6.3598 -4.7443 21 7 3.2208 -3.2119 -5.7956 22 6 2.6721 -2.3586 -3.1353 23 6 2.3663 -1.9135 -1.8654 24 1 -0.3634 -1.0090 -0.1951 25 1 -0.3634 0.3356 0.9714 26 1 -0.3634 0.6735 -0.7763 27 1 2.2428 1.4091 -2.4536 28 1 2.7967 0.6357 -4.7222 29 1 3.3832 0.0720 -6.3419 30 1 4.0335 -3.0227 -9.0398 31 1 3.7036 -7.5332 -7.3657 32 1 2.7893 -3.4155 -3.3246 33 1 2.2442 -2.6231 -1.0604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241478308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = 14.920783 kcal Electronic energy + Delta-G solvation = -19491.909524 eV Core-core repulsion = 16415.517400 eV Total energy + Delta-G solvation = -3076.392124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83368 -38.48092 -35.78987 -34.36912 -33.23444 -31.99982 -30.82409 -29.41269 -28.83312 -26.10723 -24.12814 -23.01394 -21.69446 -20.81000 -18.66162 -18.18896 -16.92328 -16.28138 -15.80258 -15.69089 -14.94389 -14.76733 -14.47786 -14.04218 -13.74804 -13.64344 -13.40900 -13.13254 -12.89329 -12.73067 -12.45464 -12.14091 -11.81499 -11.61401 -11.31161 -11.07282 -10.75075 -10.31248 -10.21175 -9.93217 -9.58301 -9.35666 -9.01495 -8.81838 -8.53151 -7.98716 -7.84889 -7.40340 -5.06202 0.69452 1.55446 1.74011 2.24178 2.45977 2.68381 3.25094 3.38381 3.68589 3.73067 3.95870 4.06907 4.42980 4.73566 4.95492 5.01590 5.10326 5.13188 5.27508 5.40254 5.60355 5.62552 5.80204 5.86029 5.90008 5.97116 6.19274 6.31769 6.39674 6.52339 6.63307 6.85794 7.06006 7.12898 7.18811 7.74314 7.88944 8.27847 8.66165 9.13739 9.72475 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.004919 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.529192 B = 5690.848348 C = 6729.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.330 4.670 3 O -0.863 6.863 4 C -0.466 4.466 5 C -0.057 4.057 6 C -0.120 4.120 7 C 0.015 3.985 8 C 0.149 3.851 9 C -0.094 4.094 10 N -0.423 5.423 11 C -0.034 4.034 12 C 0.202 3.798 13 C -0.457 4.457 14 H 0.091 0.909 15 C 0.046 3.954 16 N -0.791 5.791 17 Si 1.129 2.871 18 H -0.274 1.274 19 H -0.275 1.275 20 H -0.317 1.317 21 N -0.524 5.524 22 C -0.119 4.119 23 C -0.050 4.050 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.288 0.712 32 H 0.147 0.853 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 5.720 13.048 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.528 4.472 3 O -0.858 6.858 4 C -0.564 4.564 5 C -0.076 4.076 6 C -0.140 4.140 7 C 0.013 3.987 8 C 0.005 3.995 9 C -0.251 4.251 10 N -0.133 5.133 11 C -0.206 4.206 12 C 0.076 3.924 13 C -0.490 4.490 14 H 0.109 0.891 15 C -0.177 4.177 16 N -0.412 5.412 17 Si 0.961 3.039 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.248 1.248 21 N -0.245 5.245 22 C -0.139 4.139 23 C -0.069 4.069 24 H 0.130 0.870 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.495 5.415 14.977 16.548 hybrid contribution 0.221 1.627 -3.473 3.841 sum -4.275 7.042 11.504 14.150 Atomic orbital electron populations 1.27774 1.22726 1.08026 1.06975 1.69348 0.85855 0.99326 0.92694 1.93082 1.73145 1.37353 1.82243 1.27503 1.13384 0.99727 1.15760 1.20916 0.95509 0.99126 0.92090 1.21320 1.00605 0.94940 0.97130 1.18910 0.94976 0.92935 0.91883 1.20311 0.95694 0.90925 0.92536 1.22542 1.13792 0.98814 0.89934 1.67746 1.07499 1.17754 1.20339 1.23296 1.08971 0.88561 0.99736 1.19380 0.90086 0.95386 0.87526 1.20751 1.29674 0.89855 1.08720 0.89118 1.27693 0.95877 0.92629 1.01543 1.70578 1.28708 1.15618 1.26315 0.82572 0.74581 0.72918 0.73814 1.20153 1.20211 1.24811 1.67768 1.21936 1.13940 1.20890 1.21962 0.98193 1.01627 0.92085 1.20796 0.95795 0.93358 0.96948 0.87007 0.87891 0.90067 0.85652 0.85235 0.84514 0.84021 0.89995 0.83573 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.97 10.70 101.05 1.08 -2.89 16 2 S 1.33 12.15 14.18 -107.50 -1.52 10.63 16 3 O -0.86 -13.31 16.89 -35.23 -0.59 -13.90 16 4 C -0.47 -6.01 5.62 -39.51 -0.22 -6.23 16 5 C -0.06 -0.87 9.43 -39.64 -0.37 -1.24 16 6 C -0.12 -1.97 9.42 -39.24 -0.37 -2.34 16 7 C 0.01 0.28 5.87 -104.90 -0.62 -0.34 16 8 C 0.15 3.30 6.73 -82.76 -0.56 2.74 16 9 C -0.09 -2.04 10.61 -16.73 -0.18 -2.22 16 10 N -0.42 -9.79 10.47 -12.05 -0.13 -9.92 16 11 C -0.03 -0.81 10.98 -16.55 -0.18 -0.99 16 12 C 0.20 5.04 6.15 -84.84 -0.52 4.51 16 13 C -0.46 -11.58 9.57 -37.73 -0.36 -11.94 16 14 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 15 C 0.05 1.15 5.52 -17.34 -0.10 1.06 16 16 N -0.79 -19.97 13.65 55.55 0.76 -19.21 16 17 Si 1.13 25.38 24.53 -169.99 -4.17 21.21 16 18 H -0.27 -5.72 5.54 56.52 0.31 -5.41 16 19 H -0.28 -6.41 6.39 56.52 0.36 -6.05 16 20 H -0.32 -6.96 7.11 56.52 0.40 -6.56 16 21 N -0.52 -12.71 4.53 -7.50 -0.03 -12.74 16 22 C -0.12 -2.06 9.50 -39.24 -0.37 -2.44 16 23 C -0.05 -0.64 9.74 -39.63 -0.39 -1.03 16 24 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.13 1.86 7.44 -52.49 -0.39 1.47 16 28 H 0.13 1.94 6.22 -52.49 -0.33 1.61 16 29 H 0.14 2.55 6.22 -52.49 -0.33 2.22 16 30 H 0.14 3.01 8.06 -52.49 -0.42 2.59 16 31 H 0.29 6.93 8.72 -40.82 -0.36 6.58 16 32 H 0.15 2.73 4.09 -52.48 -0.21 2.52 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -32.99 294.42 -7.48 -40.47 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.08 Total: 2.36 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.15 Total: -23.33 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.60 Total: -41.87 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.59 Total: -13.90 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.17 Total: 21.21 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -1.52 Total: 10.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.99 -7.48 -40.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241478308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.395 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds