Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 109.47083 * 2 1 4 4 C 1.76198 * 103.00021 * 250.94377 * 2 1 3 5 5 C 1.38327 * 119.87487 * 90.00215 * 4 2 1 6 6 C 1.37996 * 120.12837 * 179.97438 * 5 4 2 7 7 C 1.39388 * 119.87361 * 359.97438 * 6 5 4 8 8 C 1.48304 * 120.13105 * 179.97438 * 7 6 5 9 9 C 1.40035 * 119.97995 * 4.98214 * 8 7 6 10 10 N 1.32184 * 120.29106 * 180.02562 * 9 8 7 11 11 C 1.31886 * 120.28341 * 359.72096 * 10 9 8 12 12 C 1.40826 * 119.96587 * 0.53159 * 11 10 9 13 13 C 1.41327 * 120.14584 * 179.74781 * 12 11 10 14 14 H 1.07999 * 120.00108 * 16.82912 * 13 12 11 15 15 C 1.40046 * 119.99827 * 196.82890 * 13 12 11 16 16 N 1.30738 * 119.99859 * 189.47454 * 15 13 12 17 17 Si 1.86803 * 120.00370 * 9.47432 * 15 13 12 18 18 H 1.48493 * 109.47407 * 270.00281 * 17 15 13 19 19 H 1.48505 * 109.46670 * 30.00223 * 17 15 13 20 20 H 1.48499 * 109.47153 * 149.99777 * 17 15 13 21 21 N 1.32514 * 119.98680 * 185.00278 * 8 7 6 22 22 C 1.39398 * 119.74714 * 0.27585 * 7 6 5 23 23 C 1.38001 * 119.87148 * 359.47323 * 22 7 6 24 24 H 1.09002 * 109.47295 * 169.05736 * 1 2 3 25 25 H 1.09008 * 109.47577 * 289.06041 * 1 2 3 26 26 H 1.09004 * 109.47385 * 49.05606 * 1 2 3 27 27 H 1.08001 * 119.93683 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.06481 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.85499 * 359.97438 * 9 8 7 30 30 H 1.07997 * 120.01418 * 180.27964 * 11 10 9 31 31 H 0.96996 * 119.99689 * 354.93295 * 16 15 13 32 32 H 1.08003 * 120.06736 * 179.72331 * 22 7 6 33 33 H 1.07996 * 119.93950 * 180.25395 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2103 -0.5605 -1.6227 5 6 2.3654 0.3540 -2.6489 6 6 2.6763 -0.0792 -3.9217 7 6 2.8347 -1.4412 -4.1722 8 6 3.1683 -1.9131 -5.5380 9 6 3.4274 -0.9859 -6.5549 10 7 3.7249 -1.3996 -7.7745 11 6 3.7856 -2.6895 -8.0429 12 6 3.5219 -3.6318 -7.0302 13 6 3.5807 -5.0149 -7.3149 14 1 4.0813 -5.3618 -8.2068 15 6 2.9899 -5.9355 -6.4404 16 7 3.1998 -7.2160 -6.5999 17 14 1.9020 -5.3340 -5.0461 18 1 2.7320 -5.0956 -3.8381 19 1 1.2374 -4.0681 -5.4478 20 1 0.8716 -6.3598 -4.7443 21 7 3.2208 -3.2119 -5.7956 22 6 2.6721 -2.3586 -3.1353 23 6 2.3663 -1.9135 -1.8654 24 1 -0.3634 -1.0090 -0.1951 25 1 -0.3634 0.3356 0.9714 26 1 -0.3634 0.6735 -0.7763 27 1 2.2428 1.4091 -2.4536 28 1 2.7967 0.6357 -4.7222 29 1 3.3832 0.0720 -6.3419 30 1 4.0335 -3.0227 -9.0398 31 1 3.7036 -7.5332 -7.3657 32 1 2.7893 -3.4155 -3.3246 33 1 2.2442 -2.6231 -1.0604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241478308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -8.240096 kcal Electronic energy + Delta-G solvation = -19492.913855 eV Core-core repulsion = 16415.517400 eV Total energy + Delta-G solvation = -3077.396455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51172 -39.81344 -36.83876 -36.23138 -34.90812 -33.63793 -32.03776 -30.87109 -29.54842 -27.90544 -25.68592 -24.48150 -23.15426 -22.32820 -20.53092 -19.23503 -18.17662 -17.93025 -17.42892 -16.94193 -16.22660 -15.92712 -15.76157 -15.61994 -15.12174 -15.00259 -14.73030 -14.49229 -14.31792 -13.85119 -13.66532 -13.37186 -13.15590 -13.02985 -12.89493 -12.66285 -12.13449 -12.03428 -11.73726 -11.38790 -11.17353 -11.14534 -10.65257 -9.99849 -9.83897 -9.60753 -9.31889 -9.19884 -6.98202 -0.61734 0.36445 0.46569 0.68724 1.03928 1.44966 1.60001 1.81869 1.90581 2.28939 2.44351 2.71773 3.01643 3.19524 3.44506 3.74633 3.78217 3.99939 4.02935 4.27474 4.37388 4.40876 4.50704 4.60117 4.63447 4.75623 4.83001 5.03534 5.18413 5.21422 5.23739 5.26021 5.34989 5.51786 5.83875 5.88805 6.04085 6.39765 6.83390 7.31014 7.81732 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.004919 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.529192 B = 5690.848348 C = 6729.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.408 4.592 3 O -0.921 6.921 4 C -0.461 4.461 5 C -0.071 4.071 6 C -0.120 4.120 7 C -0.023 4.023 8 C 0.143 3.857 9 C -0.092 4.092 10 N -0.430 5.430 11 C -0.054 4.054 12 C 0.190 3.810 13 C -0.485 4.485 14 H 0.081 0.919 15 C 0.022 3.978 16 N -0.810 5.810 17 Si 1.153 2.847 18 H -0.251 1.251 19 H -0.291 1.291 20 H -0.309 1.309 21 N -0.534 5.534 22 C -0.137 4.137 23 C -0.034 4.034 24 H 0.139 0.861 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.287 0.713 32 H 0.131 0.869 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 6.751 16.305 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.605 4.395 3 O -0.917 6.917 4 C -0.556 4.556 5 C -0.090 4.090 6 C -0.140 4.140 7 C -0.024 4.024 8 C 0.000 4.000 9 C -0.250 4.250 10 N -0.141 5.141 11 C -0.223 4.223 12 C 0.064 3.936 13 C -0.518 4.518 14 H 0.099 0.901 15 C -0.198 4.198 16 N -0.432 5.432 17 Si 0.982 3.018 18 H -0.177 1.177 19 H -0.219 1.219 20 H -0.240 1.240 21 N -0.256 5.256 22 C -0.156 4.156 23 C -0.052 4.052 24 H 0.157 0.843 25 H 0.143 0.857 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.649 6.423 18.188 20.099 hybrid contribution 0.498 1.542 -4.310 4.605 sum -5.151 7.965 13.877 16.809 Atomic orbital electron populations 1.27771 1.20631 1.09497 1.07716 1.68731 0.85861 0.96281 0.88618 1.92971 1.75743 1.40683 1.82318 1.28171 1.10833 0.99576 1.17062 1.21078 0.95960 0.99756 0.92218 1.21372 1.00442 0.94053 0.98161 1.18891 0.98478 0.94310 0.90731 1.20905 0.94321 0.90230 0.94529 1.23136 1.12018 1.00408 0.89435 1.67797 1.07679 1.17462 1.21149 1.23470 1.09898 0.88682 1.00271 1.19542 0.90188 0.95536 0.88313 1.20756 1.31388 0.90494 1.09177 0.90058 1.28423 0.96152 0.92562 1.02629 1.70595 1.29939 1.15796 1.26859 0.82295 0.74079 0.71886 0.73508 1.17717 1.21945 1.24015 1.67775 1.22101 1.15229 1.20521 1.22038 0.99234 1.00648 0.93692 1.21336 0.92999 0.94318 0.96565 0.84266 0.85662 0.91898 0.85590 0.84526 0.81527 0.82754 0.90127 0.85153 0.78881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.50 10.70 113.37 1.21 -4.29 16 2 S 1.41 19.79 14.18 -56.49 -0.80 18.99 16 3 O -0.92 -25.82 16.89 -148.98 -2.52 -28.34 16 4 C -0.46 -10.17 5.62 22.32 0.13 -10.05 16 5 C -0.07 -1.99 9.43 22.23 0.21 -1.78 16 6 C -0.12 -3.78 9.42 22.49 0.21 -3.57 16 7 C -0.02 -0.83 5.87 -20.04 -0.12 -0.95 16 8 C 0.14 6.32 6.73 42.16 0.28 6.61 16 9 C -0.09 -3.96 10.61 85.08 0.90 -3.06 16 10 N -0.43 -19.89 10.47 -192.05 -2.01 -21.90 16 11 C -0.05 -2.61 10.98 85.32 0.94 -1.67 16 12 C 0.19 9.73 6.15 40.23 0.25 9.98 16 13 C -0.49 -25.44 9.57 23.47 0.22 -25.22 16 14 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 15 C 0.02 1.12 5.52 85.29 0.47 1.59 16 16 N -0.81 -41.71 13.65 21.84 0.30 -41.41 16 17 Si 1.15 51.20 24.53 68.60 1.68 52.88 16 18 H -0.25 -10.07 5.54 99.48 0.55 -9.52 16 19 H -0.29 -13.61 6.39 99.48 0.64 -12.97 16 20 H -0.31 -13.16 7.11 99.48 0.71 -12.45 16 21 N -0.53 -26.11 4.53 -177.65 -0.80 -26.91 16 22 C -0.14 -4.43 9.50 22.49 0.21 -4.21 16 23 C -0.03 -0.73 9.74 22.24 0.22 -0.51 16 24 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.13 3.51 7.44 -2.91 -0.02 3.48 16 28 H 0.14 3.90 6.22 -2.91 -0.02 3.88 16 29 H 0.17 5.97 6.22 -2.91 -0.02 5.96 16 30 H 0.16 6.76 8.06 -2.91 -0.02 6.74 16 31 H 0.29 14.27 8.72 -92.71 -0.81 13.47 16 32 H 0.13 4.63 4.09 -2.91 -0.01 4.62 16 33 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -73.65 294.42 1.87 -71.78 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.89 Total: 12.05 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 5.14 Total: -37.13 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -2.52 Total: -90.23 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -2.52 Total: -28.34 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.68 Total: 52.88 kcal Atomic # 16 Polarization: 19.79 SS G_CDS: -0.80 Total: 18.99 kcal Total: -73.65 1.87 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241478308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.537 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds