Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 109.46770 * 2 1 4 4 C 1.76192 * 103.00138 * 109.05883 * 2 1 3 5 5 C 1.38409 * 119.84545 * 89.99861 * 4 2 1 6 6 C 1.37915 * 120.15718 * 180.02562 * 5 4 2 7 7 C 1.39695 * 119.84074 * 359.97438 * 6 5 4 8 8 C 1.47790 * 120.15221 * 179.97438 * 7 6 5 9 9 N 1.32863 * 120.24995 * 224.06099 * 8 7 6 10 10 C 1.32004 * 120.07791 * 180.02562 * 9 8 7 11 11 C 1.39195 * 120.58890 * 359.97438 * 10 9 8 12 12 N 1.31594 * 120.50512 * 0.28230 * 11 10 9 13 13 C 1.33975 * 119.90151 * 359.45006 * 12 11 10 14 14 C 1.40792 * 120.29249 * 180.25050 * 13 12 11 15 15 H 1.08001 * 120.00344 * 190.61786 * 14 13 12 16 16 C 1.40172 * 119.99835 * 10.61800 * 14 13 12 17 17 N 1.30681 * 120.00363 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47447 * 119.99783 * 18 16 14 21 21 H 1.48504 * 109.47253 * 239.99938 * 18 16 14 22 22 C 1.39695 * 119.69647 * 0.25489 * 7 6 5 23 23 C 1.37922 * 119.84012 * 359.51394 * 22 7 6 24 24 H 1.09000 * 109.46970 * 310.94158 * 1 2 3 25 25 H 1.09003 * 109.47616 * 70.93913 * 1 2 3 26 26 H 1.09004 * 109.47369 * 190.94276 * 1 2 3 27 27 H 1.07998 * 119.92282 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.08233 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.70273 * 179.97438 * 10 9 8 30 30 H 1.08001 * 119.74443 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00721 * 179.97438 * 17 16 14 32 32 H 1.07998 * 120.07832 * 179.74405 * 22 7 6 33 33 H 1.07997 * 119.92000 * 180.21121 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5606 1.6226 5 6 2.3653 -1.9145 1.8650 6 6 2.6750 -2.3604 3.1328 7 6 2.8329 -1.4419 4.1734 8 6 3.1643 -1.9122 5.5348 9 7 2.5369 -1.4037 6.5898 10 6 2.8360 -1.8259 7.8042 11 6 3.8071 -2.8048 7.9947 12 7 4.4463 -3.3206 6.9666 13 6 4.1549 -2.9107 5.7249 14 6 4.8299 -3.4608 4.6186 15 1 4.7200 -3.0134 3.6418 16 6 5.6447 -4.5892 4.7850 17 7 5.7781 -5.1303 5.9670 18 14 6.5410 -5.3188 3.3173 19 1 6.2261 -4.5267 2.1013 20 1 8.0048 -5.2858 3.5648 21 1 6.1040 -6.7241 3.1190 22 6 2.6704 -0.0773 3.9227 23 6 2.3653 0.3549 2.6490 24 1 -0.3633 0.6734 0.7763 25 1 -0.3634 0.3356 -0.9713 26 1 -0.3634 -1.0090 0.1951 27 1 2.2433 -2.6234 1.0594 28 1 2.7953 -3.4171 3.3206 29 1 2.3225 -1.4081 8.6576 30 1 4.0412 -3.1399 8.9944 31 1 6.3416 -5.9114 6.0821 32 1 2.7869 0.6378 4.7236 33 1 2.2428 1.4098 2.4530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241482884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 27.819965 kcal Electronic energy + Delta-G solvation = -19599.692390 eV Core-core repulsion = 16523.859616 eV Total energy + Delta-G solvation = -3075.832774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40510 -38.01466 -35.54499 -34.30562 -32.65497 -31.53936 -30.45512 -29.04890 -28.58246 -26.32228 -23.66485 -22.42937 -21.70143 -20.79185 -17.94990 -17.66182 -16.59268 -16.21407 -15.59194 -15.12882 -14.68925 -14.54424 -14.34885 -13.94153 -13.53719 -13.23457 -13.11622 -12.83085 -12.73373 -12.37258 -12.11642 -11.77513 -11.61973 -11.50896 -11.31155 -10.80907 -10.60515 -10.40155 -10.06803 -9.88229 -9.71395 -9.37616 -8.73727 -8.39803 -8.24363 -7.74523 -7.53790 -6.74474 -4.86760 1.21160 1.96365 2.06289 2.41570 2.79196 2.92141 2.93642 2.97421 3.06298 3.69708 3.99786 4.30801 4.47037 5.18270 5.24907 5.28278 5.37659 5.45599 5.58183 5.85661 5.95293 5.95889 6.00641 6.11948 6.31184 6.35985 6.52900 6.56595 6.76568 6.78224 6.88000 6.99716 7.28268 7.47192 7.51474 7.86901 8.19021 8.45035 9.04344 9.62901 9.90489 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005508 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.337218 B = 5082.244093 C = 6460.823989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.326 4.674 3 O -0.868 6.868 4 C -0.483 4.483 5 C -0.050 4.050 6 C -0.123 4.123 7 C 0.071 3.929 8 C -0.046 4.046 9 N -0.408 5.408 10 C -0.115 4.115 11 C 0.092 3.908 12 N -0.452 5.452 13 C 0.222 3.778 14 C -0.402 4.402 15 H 0.103 0.897 16 C 0.064 3.936 17 N -0.703 5.703 18 Si 0.910 3.090 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.128 4.128 23 C -0.056 4.056 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.139 0.861 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.281 0.719 32 H 0.119 0.881 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -0.538 -10.264 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.525 4.475 3 O -0.863 6.863 4 C -0.581 4.581 5 C -0.070 4.070 6 C -0.143 4.143 7 C 0.069 3.931 8 C -0.192 4.192 9 N -0.120 5.120 10 C -0.278 4.278 11 C -0.080 4.080 12 N -0.168 5.168 13 C 0.098 3.902 14 C -0.431 4.431 15 H 0.121 0.879 16 C -0.164 4.164 17 N -0.322 5.322 18 Si 0.733 3.267 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.148 4.148 23 C -0.075 4.075 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.000 -0.462 -10.891 11.612 hybrid contribution -0.476 0.916 1.662 1.956 sum -4.476 0.454 -9.230 10.268 Atomic orbital electron populations 1.27789 1.23413 1.07736 1.06598 1.69132 0.85537 0.99234 0.93640 1.93065 1.73043 1.37399 1.82828 1.27176 1.16079 0.99748 1.15124 1.20637 0.96393 0.93113 0.96851 1.21564 0.99895 1.00706 0.92169 1.18585 0.90690 0.92230 0.91582 1.20168 1.03234 1.04787 0.90997 1.67684 1.22785 1.22662 0.98914 1.22593 1.05927 1.05129 0.94136 1.23571 0.92626 0.92933 0.98866 1.69527 1.24445 1.25132 0.97706 1.19222 0.90107 0.88989 0.91855 1.19987 1.19830 1.07801 0.95491 0.87890 1.26261 0.95978 0.96877 0.97304 1.70029 1.24778 1.14568 1.22851 0.86183 0.79560 0.79506 0.81442 1.17481 1.19401 1.19328 1.21314 1.01747 0.95496 0.96251 1.20842 0.95672 0.98599 0.92411 0.90260 0.88248 0.87250 0.85221 0.84292 0.85255 0.84999 0.90785 0.86341 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.89 10.70 101.05 1.08 -3.81 16 2 S 1.33 14.97 14.18 -107.50 -1.52 13.45 16 3 O -0.87 -15.38 16.88 -35.23 -0.59 -15.98 16 4 C -0.48 -7.42 5.62 -39.46 -0.22 -7.64 16 5 C -0.05 -0.74 9.73 -39.64 -0.39 -1.13 16 6 C -0.12 -2.30 7.54 -39.16 -0.30 -2.60 16 7 C 0.07 1.54 5.28 -104.90 -0.55 0.98 16 8 C -0.05 -1.14 6.42 -82.11 -0.53 -1.66 16 9 N -0.41 -9.96 10.30 -8.97 -0.09 -10.05 16 10 C -0.12 -2.60 11.22 -17.12 -0.19 -2.80 16 11 C 0.09 2.12 11.22 -17.30 -0.19 1.93 16 12 N -0.45 -11.82 8.12 -10.73 -0.09 -11.91 16 13 C 0.22 5.76 6.50 -84.56 -0.55 5.21 16 14 C -0.40 -9.72 7.45 -37.89 -0.28 -10.01 16 15 H 0.10 2.33 5.37 -52.49 -0.28 2.05 16 16 C 0.06 1.47 5.49 -17.32 -0.10 1.37 16 17 N -0.70 -17.08 11.55 55.56 0.64 -16.44 16 18 Si 0.91 16.60 29.56 -169.99 -5.03 11.58 16 19 H -0.25 -4.42 7.11 56.52 0.40 -4.01 16 20 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 22 C -0.13 -2.61 9.68 -39.15 -0.38 -2.99 16 23 C -0.06 -1.03 9.42 -39.64 -0.37 -1.40 16 24 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 2.60 6.73 -52.49 -0.35 2.25 16 29 H 0.13 2.49 8.06 -52.48 -0.42 2.06 16 30 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 31 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.12 2.13 7.44 -52.49 -0.39 1.74 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -33.84 302.68 -8.21 -42.05 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.12 Total: 7.28 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.97 Total: -24.54 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.46 Total: -38.40 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.59 Total: -15.98 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 14.97 SS G_CDS: -1.52 Total: 13.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.84 -8.21 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.871 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds