Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 109.46770 * 2 1 4 4 C 1.76192 * 103.00138 * 109.05883 * 2 1 3 5 5 C 1.38409 * 119.84545 * 89.99861 * 4 2 1 6 6 C 1.37915 * 120.15718 * 180.02562 * 5 4 2 7 7 C 1.39695 * 119.84074 * 359.97438 * 6 5 4 8 8 C 1.47790 * 120.15221 * 179.97438 * 7 6 5 9 9 N 1.32863 * 120.24995 * 224.06099 * 8 7 6 10 10 C 1.32004 * 120.07791 * 180.02562 * 9 8 7 11 11 C 1.39195 * 120.58890 * 359.97438 * 10 9 8 12 12 N 1.31594 * 120.50512 * 0.28230 * 11 10 9 13 13 C 1.33975 * 119.90151 * 359.45006 * 12 11 10 14 14 C 1.40792 * 120.29249 * 180.25050 * 13 12 11 15 15 H 1.08001 * 120.00344 * 190.61786 * 14 13 12 16 16 C 1.40172 * 119.99835 * 10.61800 * 14 13 12 17 17 N 1.30681 * 120.00363 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47447 * 119.99783 * 18 16 14 21 21 H 1.48504 * 109.47253 * 239.99938 * 18 16 14 22 22 C 1.39695 * 119.69647 * 0.25489 * 7 6 5 23 23 C 1.37922 * 119.84012 * 359.51394 * 22 7 6 24 24 H 1.09000 * 109.46970 * 310.94158 * 1 2 3 25 25 H 1.09003 * 109.47616 * 70.93913 * 1 2 3 26 26 H 1.09004 * 109.47369 * 190.94276 * 1 2 3 27 27 H 1.07998 * 119.92282 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.08233 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.70273 * 179.97438 * 10 9 8 30 30 H 1.08001 * 119.74443 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00721 * 179.97438 * 17 16 14 32 32 H 1.07998 * 120.07832 * 179.74405 * 22 7 6 33 33 H 1.07997 * 119.92000 * 180.21121 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5606 1.6226 5 6 2.3653 -1.9145 1.8650 6 6 2.6750 -2.3604 3.1328 7 6 2.8329 -1.4419 4.1734 8 6 3.1643 -1.9122 5.5348 9 7 2.5369 -1.4037 6.5898 10 6 2.8360 -1.8259 7.8042 11 6 3.8071 -2.8048 7.9947 12 7 4.4463 -3.3206 6.9666 13 6 4.1549 -2.9107 5.7249 14 6 4.8299 -3.4608 4.6186 15 1 4.7200 -3.0134 3.6418 16 6 5.6447 -4.5892 4.7850 17 7 5.7781 -5.1303 5.9670 18 14 6.5410 -5.3188 3.3173 19 1 6.2261 -4.5267 2.1013 20 1 8.0048 -5.2858 3.5648 21 1 6.1040 -6.7241 3.1190 22 6 2.6704 -0.0773 3.9227 23 6 2.3653 0.3549 2.6490 24 1 -0.3633 0.6734 0.7763 25 1 -0.3634 0.3356 -0.9713 26 1 -0.3634 -1.0090 0.1951 27 1 2.2433 -2.6234 1.0594 28 1 2.7953 -3.4171 3.3206 29 1 2.3225 -1.4081 8.6576 30 1 4.0412 -3.1399 8.9944 31 1 6.3416 -5.9114 6.0821 32 1 2.7869 0.6378 4.7236 33 1 2.2428 1.4098 2.4530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241482884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 3.854238 kcal Electronic energy + Delta-G solvation = -19600.731622 eV Core-core repulsion = 16523.859616 eV Total energy + Delta-G solvation = -3076.872006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11388 -39.51464 -36.79155 -36.05730 -34.36018 -33.23578 -31.86887 -30.53885 -29.51404 -28.09227 -25.29249 -24.09334 -23.24359 -22.35408 -19.62778 -18.93679 -17.96314 -17.91576 -17.00936 -16.78547 -15.98526 -15.93482 -15.71131 -15.39509 -14.87179 -14.72609 -14.48249 -14.23678 -14.04632 -13.70728 -13.35897 -13.27480 -13.06768 -13.00569 -12.67839 -12.32013 -12.03749 -11.90866 -11.73321 -11.54583 -11.18856 -11.11032 -10.29547 -9.80163 -9.58341 -9.38771 -9.15276 -8.47482 -6.67799 -0.17961 0.53193 0.64729 0.99853 1.18138 1.43791 1.54711 1.61725 1.89099 2.19241 2.69790 2.80523 3.09707 3.67593 3.71273 3.98438 4.11631 4.15290 4.33438 4.39645 4.53302 4.56878 4.61689 4.71354 4.86296 4.92736 5.04039 5.08166 5.22753 5.23767 5.36701 5.45632 5.71836 5.81567 6.07822 6.10775 6.42119 6.65769 7.23923 7.81272 8.23596 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005508 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.337218 B = 5082.244093 C = 6460.823989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.410 4.590 3 O -0.929 6.929 4 C -0.480 4.480 5 C -0.029 4.029 6 C -0.132 4.132 7 C 0.035 3.965 8 C -0.059 4.059 9 N -0.431 5.431 10 C -0.125 4.125 11 C 0.081 3.919 12 N -0.487 5.487 13 C 0.189 3.811 14 C -0.417 4.417 15 H 0.114 0.886 16 C 0.021 3.979 17 N -0.742 5.742 18 Si 0.987 3.013 19 H -0.235 1.235 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.144 4.144 23 C -0.072 4.072 24 H 0.057 0.943 25 H 0.125 0.875 26 H 0.140 0.860 27 H 0.196 0.804 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.288 0.712 32 H 0.099 0.901 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -1.770 -13.792 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.608 4.392 3 O -0.925 6.925 4 C -0.576 4.576 5 C -0.048 4.048 6 C -0.152 4.152 7 C 0.033 3.967 8 C -0.205 4.205 9 N -0.144 5.144 10 C -0.286 4.286 11 C -0.090 4.090 12 N -0.204 5.204 13 C 0.065 3.935 14 C -0.446 4.446 15 H 0.131 0.869 16 C -0.203 4.203 17 N -0.362 5.362 18 Si 0.805 3.195 19 H -0.158 1.158 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.165 4.165 23 C -0.091 4.091 24 H 0.076 0.924 25 H 0.144 0.856 26 H 0.158 0.842 27 H 0.213 0.787 28 H 0.153 0.847 29 H 0.177 0.823 30 H 0.179 0.821 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.734 -1.680 -14.362 15.215 hybrid contribution -0.402 1.373 2.682 3.040 sum -5.137 -0.307 -11.680 12.763 Atomic orbital electron populations 1.27771 1.20955 1.09377 1.07448 1.68410 0.85708 0.96070 0.89049 1.92951 1.75861 1.40894 1.82770 1.27920 1.13521 0.99756 1.16370 1.21285 0.92880 0.93857 0.96732 1.21704 1.00289 1.00065 0.93158 1.18677 0.93587 0.93170 0.91254 1.20643 1.02862 1.04530 0.92455 1.67750 1.23499 1.23430 0.99675 1.23093 1.05934 1.04937 0.94633 1.24055 0.92461 0.92851 0.99622 1.69487 1.25935 1.26488 0.98526 1.19697 0.91172 0.90103 0.92502 1.20319 1.20246 1.08493 0.95553 0.86861 1.27264 0.96156 0.96607 1.00314 1.70110 1.25574 1.15282 1.25271 0.85066 0.77574 0.79052 0.77838 1.15760 1.19634 1.18165 1.21203 1.03359 0.94990 0.96930 1.20903 0.96580 0.99093 0.92491 0.92392 0.85643 0.84169 0.78745 0.84658 0.82280 0.82079 0.90053 0.88308 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -7.41 10.70 113.37 1.21 -6.20 16 2 S 1.41 26.41 14.18 -56.49 -0.80 25.61 16 3 O -0.93 -31.02 16.88 -148.98 -2.52 -33.54 16 4 C -0.48 -13.47 5.62 22.35 0.13 -13.34 16 5 C -0.03 -0.75 9.73 22.23 0.22 -0.53 16 6 C -0.13 -4.80 7.54 22.55 0.17 -4.63 16 7 C 0.03 1.55 5.28 -20.05 -0.11 1.44 16 8 C -0.06 -3.03 6.42 42.43 0.27 -2.76 16 9 N -0.43 -21.96 10.30 -182.29 -1.88 -23.84 16 10 C -0.12 -5.78 11.22 84.90 0.95 -4.83 16 11 C 0.08 3.85 11.22 84.96 0.95 4.80 16 12 N -0.49 -26.51 8.12 -187.86 -1.53 -28.03 16 13 C 0.19 10.19 6.50 40.35 0.26 10.45 16 14 C -0.42 -20.54 7.45 23.36 0.17 -20.36 16 15 H 0.11 5.14 5.37 -2.91 -0.02 5.12 16 16 C 0.02 0.96 5.49 85.33 0.47 1.43 16 17 N -0.74 -36.77 11.55 21.86 0.25 -36.51 16 18 Si 0.99 32.99 29.56 68.60 2.03 35.01 16 19 H -0.24 -7.16 7.11 99.48 0.71 -6.46 16 20 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 21 H -0.26 -8.09 7.11 99.48 0.71 -7.39 16 22 C -0.14 -6.16 9.68 22.55 0.22 -5.94 16 23 C -0.07 -2.63 9.42 22.23 0.21 -2.42 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.14 4.97 6.73 -2.91 -0.02 4.95 16 29 H 0.16 6.16 8.06 -2.91 -0.02 6.14 16 30 H 0.16 6.37 8.06 -2.91 -0.02 6.35 16 31 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 32 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.11 4.13 7.44 -2.91 -0.02 4.11 16 Total: -1.00 -79.07 302.68 1.83 -77.24 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 1.14 Total: 26.95 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 5.13 Total: -42.89 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -3.15 Total: -88.39 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -2.52 Total: -33.54 kcal Atomic # 14 Polarization: 32.99 SS G_CDS: 2.03 Total: 35.01 kcal Atomic # 16 Polarization: 26.41 SS G_CDS: -0.80 Total: 25.61 kcal Total: -79.07 1.83 -77.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.091 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds