Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 109.46665 * 2 1 4 4 C 1.76202 * 102.99886 * 250.94661 * 2 1 3 5 5 C 1.38408 * 119.84271 * 89.99779 * 4 2 1 6 6 C 1.37918 * 120.15131 * 179.97438 * 5 4 2 7 7 C 1.39688 * 119.84379 * 0.02562 * 6 5 4 8 8 C 1.47792 * 120.15163 * 179.97438 * 7 6 5 9 9 N 1.32859 * 120.24704 * 316.46005 * 8 7 6 10 10 C 1.32008 * 120.07696 * 179.97438 * 9 8 7 11 11 C 1.39197 * 120.58858 * 0.02562 * 10 9 8 12 12 N 1.31606 * 120.50624 * 359.67541 * 11 10 9 13 13 C 1.33979 * 119.89452 * 0.60172 * 12 11 10 14 14 C 1.40795 * 120.28676 * 179.69933 * 13 12 11 15 15 H 1.08000 * 120.00638 * 157.49835 * 14 13 12 16 16 C 1.40180 * 119.99498 * 337.49795 * 14 13 12 17 17 N 1.30678 * 120.00508 * 339.76201 * 16 14 13 18 18 Si 1.86802 * 119.99566 * 159.49001 * 16 14 13 19 19 H 1.48507 * 109.46964 * 270.27500 * 18 16 14 20 20 H 1.48504 * 109.47314 * 30.27452 * 18 16 14 21 21 H 1.48495 * 109.47265 * 150.27491 * 18 16 14 22 22 C 1.39693 * 119.69390 * 0.25173 * 7 6 5 23 23 C 1.37914 * 119.84638 * 359.49233 * 22 7 6 24 24 H 1.09006 * 109.46804 * 169.05571 * 1 2 3 25 25 H 1.09000 * 109.46902 * 289.05047 * 1 2 3 26 26 H 1.08991 * 109.47815 * 49.05420 * 1 2 3 27 27 H 1.08001 * 119.92689 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.07517 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.70259 * 180.02562 * 10 9 8 30 30 H 1.08001 * 119.74539 * 179.97438 * 11 10 9 31 31 H 0.97009 * 119.99757 * 353.70158 * 17 16 14 32 32 H 1.08004 * 120.07464 * 179.72356 * 22 7 6 33 33 H 1.07996 * 119.92588 * 180.24914 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6228 5 6 2.3652 0.3552 -2.6491 6 6 2.6759 -0.0764 -3.9216 7 6 2.8338 -1.4413 -4.1735 8 6 3.1662 -1.9114 -5.5346 9 7 2.5464 -1.3959 -6.5907 10 6 2.8463 -1.8179 -7.8050 11 6 3.8106 -2.8038 -7.9943 12 7 4.4430 -3.3261 -6.9650 13 6 4.1502 -2.9165 -5.7234 14 6 4.8172 -3.4742 -4.6160 15 1 4.8672 -2.9292 -3.6850 16 6 5.4164 -4.7371 -4.7218 17 7 5.0431 -5.5605 -5.6654 18 14 6.7538 -5.2400 -3.5186 19 1 8.0787 -4.8347 -4.0534 20 1 6.5218 -4.5718 -2.2128 21 1 6.7244 -6.7130 -3.3331 22 6 2.6703 -2.3602 -3.1341 23 6 2.3648 -1.9143 -1.8654 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3633 0.3354 0.9714 26 1 -0.3634 0.6734 -0.7761 27 1 2.2433 1.4102 -2.4528 28 1 2.7961 0.6392 -4.7216 29 1 2.3390 -1.3945 -8.6592 30 1 4.0450 -3.1393 -8.9937 31 1 4.2905 -5.3363 -6.2350 32 1 2.7865 -3.4173 -3.3230 33 1 2.2421 -2.6233 -1.0601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241482885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = 15.195026 kcal Electronic energy + Delta-G solvation = -19641.863106 eV Core-core repulsion = 16565.482874 eV Total energy + Delta-G solvation = -3076.380232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59036 -38.12519 -35.57823 -34.58754 -32.82027 -31.42668 -30.50421 -29.05153 -28.59309 -26.15874 -23.79491 -22.44992 -21.79317 -20.91914 -18.45762 -17.81111 -16.66450 -16.26081 -15.67268 -14.94652 -14.73014 -14.66437 -14.24523 -13.97553 -13.64739 -13.33928 -13.26337 -13.00115 -12.73339 -12.50097 -12.17914 -12.01039 -11.76332 -11.35821 -11.16706 -10.68155 -10.56531 -10.22127 -10.17866 -9.96082 -9.93217 -9.38864 -8.81809 -8.47125 -8.30049 -7.96284 -7.79446 -7.25046 -4.93857 1.14600 1.91681 2.00405 2.32879 2.65475 2.88966 3.03910 3.12308 3.22390 3.81677 3.95896 4.24484 4.41394 5.15158 5.15974 5.23023 5.25946 5.38496 5.41610 5.65850 5.86685 5.92441 5.93465 6.04674 6.16129 6.29299 6.40054 6.49049 6.71279 6.74520 6.86761 7.19315 7.30677 7.43519 7.44646 7.58294 8.19077 8.28957 8.86441 9.35010 9.79309 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.005495 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.107080 B = 5094.731832 C = 6410.100840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.327 4.673 3 O -0.867 6.867 4 C -0.480 4.480 5 C -0.057 4.057 6 C -0.127 4.127 7 C 0.067 3.933 8 C -0.037 4.037 9 N -0.403 5.403 10 C -0.120 4.120 11 C 0.105 3.895 12 N -0.517 5.517 13 C 0.209 3.791 14 C -0.451 4.451 15 H 0.098 0.902 16 C 0.034 3.966 17 N -0.740 5.740 18 Si 1.069 2.931 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.117 4.117 23 C -0.051 4.051 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.308 0.692 32 H 0.138 0.862 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 0.711 10.298 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.526 4.474 3 O -0.863 6.863 4 C -0.579 4.579 5 C -0.076 4.076 6 C -0.148 4.148 7 C 0.065 3.935 8 C -0.184 4.184 9 N -0.115 5.115 10 C -0.281 4.281 11 C -0.065 4.065 12 N -0.235 5.235 13 C 0.086 3.914 14 C -0.481 4.481 15 H 0.116 0.884 16 C -0.195 4.195 17 N -0.361 5.361 18 Si 0.891 3.109 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.137 4.137 23 C -0.070 4.070 24 H 0.128 0.872 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.905 -0.260 11.353 11.722 hybrid contribution -2.012 2.613 -2.728 4.280 sum -4.917 2.353 8.625 10.203 Atomic orbital electron populations 1.27787 1.23359 1.07755 1.06639 1.69160 0.85547 0.99217 0.93499 1.93064 1.73057 1.37413 1.82760 1.27218 1.15745 0.99745 1.15178 1.20846 0.95720 0.98649 0.92381 1.21308 1.01730 0.95419 0.96323 1.18547 0.91251 0.92274 0.91438 1.20173 1.02069 1.05035 0.91083 1.67691 1.22452 1.22416 0.98913 1.22534 1.06317 1.04954 0.94272 1.23385 0.92253 0.92699 0.98205 1.69059 1.26435 1.29479 0.98509 1.19214 0.90396 0.90457 0.91337 1.20808 1.26385 1.02906 0.97981 0.88367 1.27244 1.00296 0.92909 0.99032 1.70189 1.19641 1.36125 1.10122 0.83564 0.75095 0.77244 0.74953 1.19747 1.19403 1.19682 1.21539 0.99368 1.00684 0.92071 1.20645 0.96409 0.93123 0.96846 0.87231 0.88189 0.90265 0.86451 0.86392 0.84920 0.84668 0.87642 0.84386 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.85 10.70 101.05 1.08 -3.76 16 2 S 1.33 14.83 14.18 -107.50 -1.52 13.30 16 3 O -0.87 -15.25 16.88 -35.23 -0.59 -15.85 16 4 C -0.48 -7.34 5.62 -39.46 -0.22 -7.56 16 5 C -0.06 -1.04 9.42 -39.64 -0.37 -1.41 16 6 C -0.13 -2.59 9.67 -39.16 -0.38 -2.97 16 7 C 0.07 1.44 5.25 -104.91 -0.55 0.89 16 8 C -0.04 -0.90 6.42 -82.11 -0.53 -1.43 16 9 N -0.40 -9.70 10.30 -8.97 -0.09 -9.79 16 10 C -0.12 -2.64 11.22 -17.12 -0.19 -2.83 16 11 C 0.11 2.35 11.22 -17.29 -0.19 2.16 16 12 N -0.52 -13.13 8.03 -10.72 -0.09 -13.22 16 13 C 0.21 5.33 6.06 -84.55 -0.51 4.82 16 14 C -0.45 -10.89 6.96 -37.89 -0.26 -11.16 16 15 H 0.10 2.26 6.13 -52.49 -0.32 1.94 16 16 C 0.03 0.80 5.30 -17.31 -0.09 0.71 16 17 N -0.74 -18.54 13.11 55.56 0.73 -17.81 16 18 Si 1.07 19.59 29.98 -169.99 -5.10 14.50 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 20 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 C -0.12 -2.19 7.71 -39.16 -0.30 -2.49 16 23 C -0.05 -0.75 9.73 -39.64 -0.39 -1.13 16 24 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 25 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.12 2.13 7.44 -52.49 -0.39 1.74 16 28 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 29 H 0.13 2.49 8.06 -52.49 -0.42 2.06 16 30 H 0.14 2.51 8.06 -52.49 -0.42 2.08 16 31 H 0.31 8.07 6.60 -40.82 -0.27 7.80 16 32 H 0.14 2.66 6.76 -52.48 -0.35 2.30 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -33.49 302.68 -8.11 -41.60 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.09 Total: 8.89 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.91 Total: -26.18 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.55 Total: -40.82 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.59 Total: -15.85 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.10 Total: 14.50 kcal Atomic # 16 Polarization: 14.83 SS G_CDS: -1.52 Total: 13.30 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.49 -8.11 -41.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.796 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds