Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 109.46665 * 2 1 4 4 C 1.76202 * 102.99886 * 250.94661 * 2 1 3 5 5 C 1.38408 * 119.84271 * 89.99779 * 4 2 1 6 6 C 1.37918 * 120.15131 * 179.97438 * 5 4 2 7 7 C 1.39688 * 119.84379 * 0.02562 * 6 5 4 8 8 C 1.47792 * 120.15163 * 179.97438 * 7 6 5 9 9 N 1.32859 * 120.24704 * 316.46005 * 8 7 6 10 10 C 1.32008 * 120.07696 * 179.97438 * 9 8 7 11 11 C 1.39197 * 120.58858 * 0.02562 * 10 9 8 12 12 N 1.31606 * 120.50624 * 359.67541 * 11 10 9 13 13 C 1.33979 * 119.89452 * 0.60172 * 12 11 10 14 14 C 1.40795 * 120.28676 * 179.69933 * 13 12 11 15 15 H 1.08000 * 120.00638 * 157.49835 * 14 13 12 16 16 C 1.40180 * 119.99498 * 337.49795 * 14 13 12 17 17 N 1.30678 * 120.00508 * 339.76201 * 16 14 13 18 18 Si 1.86802 * 119.99566 * 159.49001 * 16 14 13 19 19 H 1.48507 * 109.46964 * 270.27500 * 18 16 14 20 20 H 1.48504 * 109.47314 * 30.27452 * 18 16 14 21 21 H 1.48495 * 109.47265 * 150.27491 * 18 16 14 22 22 C 1.39693 * 119.69390 * 0.25173 * 7 6 5 23 23 C 1.37914 * 119.84638 * 359.49233 * 22 7 6 24 24 H 1.09006 * 109.46804 * 169.05571 * 1 2 3 25 25 H 1.09000 * 109.46902 * 289.05047 * 1 2 3 26 26 H 1.08991 * 109.47815 * 49.05420 * 1 2 3 27 27 H 1.08001 * 119.92689 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.07517 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.70259 * 180.02562 * 10 9 8 30 30 H 1.08001 * 119.74539 * 179.97438 * 11 10 9 31 31 H 0.97009 * 119.99757 * 353.70158 * 17 16 14 32 32 H 1.08004 * 120.07464 * 179.72356 * 22 7 6 33 33 H 1.07996 * 119.92588 * 180.24914 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6228 5 6 2.3652 0.3552 -2.6491 6 6 2.6759 -0.0764 -3.9216 7 6 2.8338 -1.4413 -4.1735 8 6 3.1662 -1.9114 -5.5346 9 7 2.5464 -1.3959 -6.5907 10 6 2.8463 -1.8179 -7.8050 11 6 3.8106 -2.8038 -7.9943 12 7 4.4430 -3.3261 -6.9650 13 6 4.1502 -2.9165 -5.7234 14 6 4.8172 -3.4742 -4.6160 15 1 4.8672 -2.9292 -3.6850 16 6 5.4164 -4.7371 -4.7218 17 7 5.0431 -5.5605 -5.6654 18 14 6.7538 -5.2400 -3.5186 19 1 8.0787 -4.8347 -4.0534 20 1 6.5218 -4.5718 -2.2128 21 1 6.7244 -6.7130 -3.3331 22 6 2.6703 -2.3602 -3.1341 23 6 2.3648 -1.9143 -1.8654 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3633 0.3354 0.9714 26 1 -0.3634 0.6734 -0.7761 27 1 2.2433 1.4102 -2.4528 28 1 2.7961 0.6392 -4.7216 29 1 2.3390 -1.3945 -8.6592 30 1 4.0450 -3.1393 -8.9937 31 1 4.2905 -5.3363 -6.2350 32 1 2.7865 -3.4173 -3.3230 33 1 2.2421 -2.6233 -1.0601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241482885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -8.305141 kcal Electronic energy + Delta-G solvation = -19642.882150 eV Core-core repulsion = 16565.482874 eV Total energy + Delta-G solvation = -3077.399276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31575 -39.60894 -36.81736 -36.36673 -34.51879 -33.11906 -31.91786 -30.52967 -29.53169 -27.94222 -25.41383 -24.13911 -23.32300 -22.46705 -20.21654 -18.99887 -18.07546 -17.97352 -17.03236 -16.67717 -16.11585 -15.76917 -15.69915 -15.42305 -15.18206 -14.78291 -14.52187 -14.45569 -14.11141 -13.89763 -13.52911 -13.39937 -13.03226 -12.87161 -12.54420 -12.11297 -12.01996 -11.96919 -11.79402 -11.67740 -11.23105 -11.09065 -10.40444 -9.91450 -9.75532 -9.62209 -9.26433 -9.03599 -6.76935 -0.26485 0.47655 0.54628 0.83000 1.09250 1.56078 1.66833 1.84578 1.85831 2.31244 2.63266 2.74848 3.06298 3.46963 3.56189 3.91508 3.95319 4.08423 4.20361 4.37346 4.43613 4.51925 4.53999 4.65121 4.73756 4.85017 4.93226 5.14615 5.21764 5.31678 5.35246 5.49925 5.62080 5.70147 5.78593 6.03732 6.38746 6.51207 7.06500 7.53996 7.93561 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.005495 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.107080 B = 5094.731832 C = 6410.100840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.411 4.589 3 O -0.927 6.927 4 C -0.477 4.477 5 C -0.072 4.072 6 C -0.143 4.143 7 C 0.030 3.970 8 C -0.050 4.050 9 N -0.426 5.426 10 C -0.123 4.123 11 C 0.096 3.904 12 N -0.547 5.547 13 C 0.182 3.818 14 C -0.465 4.465 15 H 0.104 0.896 16 C 0.005 3.995 17 N -0.766 5.766 18 Si 1.117 2.883 19 H -0.275 1.275 20 H -0.239 1.239 21 H -0.265 1.265 22 C -0.126 4.126 23 C -0.029 4.029 24 H 0.139 0.861 25 H 0.126 0.874 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.291 0.709 32 H 0.130 0.870 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 0.065 13.383 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.609 4.391 3 O -0.924 6.924 4 C -0.572 4.572 5 C -0.091 4.091 6 C -0.163 4.163 7 C 0.028 3.972 8 C -0.197 4.197 9 N -0.138 5.138 10 C -0.284 4.284 11 C -0.074 4.074 12 N -0.266 5.266 13 C 0.059 3.941 14 C -0.495 4.495 15 H 0.122 0.878 16 C -0.219 4.219 17 N -0.386 5.386 18 Si 0.932 3.068 19 H -0.201 1.201 20 H -0.162 1.162 21 H -0.189 1.189 22 C -0.146 4.146 23 C -0.048 4.048 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.183 0.817 30 H 0.187 0.813 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.582 -0.889 14.390 14.855 hybrid contribution -1.998 2.934 -3.633 5.079 sum -5.580 2.045 10.757 12.289 Atomic orbital electron populations 1.27771 1.20922 1.09366 1.07511 1.68461 0.85711 0.96062 0.88885 1.92951 1.75850 1.40879 1.82672 1.27964 1.13140 0.99666 1.16475 1.20920 0.96552 0.99177 0.92444 1.21203 1.03237 0.94854 0.97036 1.18647 0.94161 0.93228 0.91134 1.20654 1.01656 1.04806 0.92548 1.67770 1.23161 1.23223 0.99692 1.23122 1.06028 1.04458 0.94747 1.23937 0.91926 0.92417 0.99085 1.69046 1.27824 1.30529 0.99241 1.19632 0.91095 0.91369 0.92000 1.20977 1.27053 1.03444 0.98042 0.87773 1.28684 1.01274 0.92445 0.99450 1.70305 1.19977 1.36893 1.11449 0.83047 0.72053 0.77552 0.74169 1.20057 1.16222 1.18939 1.21639 0.99958 0.99822 0.93208 1.21274 0.92954 0.93927 0.96641 0.84216 0.85567 0.92358 0.86975 0.88204 0.81724 0.81285 0.89557 0.85256 0.78789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -7.34 10.70 113.37 1.21 -6.13 16 2 S 1.41 26.15 14.18 -56.49 -0.80 25.35 16 3 O -0.93 -30.66 16.88 -148.98 -2.52 -33.17 16 4 C -0.48 -13.32 5.62 22.35 0.13 -13.20 16 5 C -0.07 -2.62 9.42 22.23 0.21 -2.41 16 6 C -0.14 -6.04 9.67 22.54 0.22 -5.82 16 7 C 0.03 1.33 5.25 -20.05 -0.11 1.22 16 8 C -0.05 -2.55 6.42 42.43 0.27 -2.28 16 9 N -0.43 -21.25 10.30 -182.30 -1.88 -23.12 16 10 C -0.12 -5.51 11.22 84.90 0.95 -4.56 16 11 C 0.10 4.34 11.22 84.96 0.95 5.30 16 12 N -0.55 -28.76 8.03 -187.84 -1.51 -30.26 16 13 C 0.18 9.63 6.06 40.35 0.24 9.87 16 14 C -0.47 -22.91 6.96 23.37 0.16 -22.75 16 15 H 0.10 4.84 6.13 -2.91 -0.02 4.82 16 16 C 0.00 0.21 5.30 85.34 0.45 0.67 16 17 N -0.77 -39.25 13.11 21.86 0.29 -38.96 16 18 Si 1.12 38.39 29.98 68.60 2.06 40.45 16 19 H -0.28 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.24 -7.02 7.11 99.48 0.71 -6.31 16 21 H -0.27 -8.75 7.11 99.48 0.71 -8.04 16 22 C -0.13 -4.65 7.71 22.54 0.17 -4.48 16 23 C -0.03 -0.76 9.73 22.23 0.22 -0.55 16 24 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 4.14 7.44 -2.91 -0.02 4.12 16 28 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.17 6.07 8.06 -2.91 -0.02 6.05 16 30 H 0.17 6.23 8.06 -2.91 -0.02 6.20 16 31 H 0.29 15.85 6.60 -92.70 -0.61 15.24 16 32 H 0.13 4.96 6.76 -2.91 -0.02 4.94 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -78.03 302.68 2.03 -76.00 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 1.30 Total: 28.82 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 5.09 Total: -45.11 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.10 Total: -92.35 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -2.52 Total: -33.17 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.06 Total: 40.45 kcal Atomic # 16 Polarization: 26.15 SS G_CDS: -0.80 Total: 25.35 kcal Total: -78.03 2.03 -76.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.700 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds