Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 109.46624 * 2 1 4 4 C 1.76197 * 103.00167 * 109.05276 * 2 1 3 5 5 C 1.38408 * 119.85196 * 90.00323 * 4 2 1 6 6 C 1.37912 * 120.15399 * 180.02562 * 5 4 2 7 7 C 1.39659 * 119.84470 * 359.97438 * 6 5 4 8 8 C 1.47940 * 120.14321 * 179.97438 * 7 6 5 9 9 C 1.40427 * 120.78695 * 180.02562 * 8 7 6 10 10 N 1.31594 * 119.09445 * 180.02562 * 9 8 7 11 11 C 1.33645 * 120.82396 * 0.02562 * 10 9 8 12 12 C 1.41094 * 119.12560 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00541 * 359.97438 * 12 11 10 14 14 C 1.40148 * 119.99489 * 179.97438 * 12 11 10 15 15 N 1.30652 * 120.00351 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99686 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46629 * 90.00769 * 16 14 12 18 18 H 1.48495 * 109.46893 * 210.00086 * 16 14 12 19 19 H 1.48494 * 109.47206 * 330.00527 * 16 14 12 20 20 N 1.33640 * 121.73978 * 359.97438 * 11 10 9 21 21 C 1.31591 * 120.82751 * 0.02562 * 20 11 10 22 22 C 1.39651 * 119.70753 * 0.25532 * 7 6 5 23 23 C 1.37917 * 119.84551 * 359.51320 * 22 7 6 24 24 H 1.08995 * 109.47389 * 310.94733 * 1 2 3 25 25 H 1.09002 * 109.47113 * 70.94766 * 1 2 3 26 26 H 1.09003 * 109.47059 * 190.94542 * 1 2 3 27 27 H 1.08005 * 119.92432 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.08057 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.45563 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00474 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.45030 * 180.02562 * 21 20 11 32 32 H 1.08001 * 120.07724 * 179.72167 * 22 7 6 33 33 H 1.08001 * 119.92524 * 180.23389 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2875 1.3398 0.0000 4 6 2.2104 -0.5604 1.6228 5 6 2.3654 -1.9142 1.8654 6 6 2.6752 -2.3598 3.1332 7 6 2.8329 -1.4414 4.1735 8 6 3.1646 -1.9121 5.5362 9 6 3.3258 -1.0005 6.5922 10 7 3.6212 -1.4557 7.7910 11 6 3.7681 -2.7661 8.0089 12 6 4.0855 -3.2148 9.3084 13 1 4.2070 -2.5026 10.1111 14 6 4.2433 -4.5849 9.5575 15 7 4.0969 -5.4466 8.5863 16 14 4.6642 -5.1791 11.2778 17 1 3.4116 -5.4394 12.0318 18 1 5.4576 -6.4311 11.1887 19 1 5.4578 -4.1390 11.9803 20 7 3.6223 -3.6625 7.0285 21 6 3.3269 -3.2809 5.8043 22 6 2.6703 -0.0772 3.9228 23 6 2.3653 0.3551 2.6492 24 1 -0.3634 0.6735 0.7762 25 1 -0.3633 0.3355 -0.9714 26 1 -0.3633 -1.0090 0.1951 27 1 2.2428 -2.6234 1.0601 28 1 2.7955 -3.4165 3.3213 29 1 3.2088 0.0597 6.4228 30 1 4.2064 -6.3949 8.7586 31 1 3.2101 -4.0106 5.0167 32 1 2.7865 0.6379 4.7238 33 1 2.2430 1.4101 2.4531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241484665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = 28.925580 kcal Electronic energy + Delta-G solvation = -18923.720047 eV Core-core repulsion = 15847.935217 eV Total energy + Delta-G solvation = -3075.784831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41524 -38.18359 -35.62986 -34.20751 -32.34331 -32.01382 -30.59016 -29.21880 -28.73626 -26.27134 -23.64298 -22.98073 -21.47946 -20.82535 -18.25397 -17.86411 -16.68334 -16.23154 -15.37600 -15.36392 -14.83683 -14.76260 -14.33110 -13.77658 -13.59860 -13.30531 -13.12555 -12.87565 -12.83009 -12.33982 -12.27909 -12.10140 -11.66827 -11.51982 -11.45584 -10.98918 -10.66792 -10.49893 -10.13803 -9.90178 -9.43627 -9.34849 -9.17305 -8.64602 -8.39578 -7.55464 -7.55322 -6.83406 -4.96951 1.02253 1.77678 1.94551 2.50774 2.79706 2.84074 2.89732 2.94171 2.99720 3.66404 3.90954 4.15652 4.49793 5.10047 5.12526 5.20328 5.25019 5.42504 5.57841 5.64881 5.69708 5.78988 5.87698 5.90341 6.07738 6.24382 6.24990 6.59443 6.60275 6.67117 6.74151 6.89956 7.28090 7.30405 7.43474 7.86903 8.18917 8.27517 8.84672 9.80663 10.00040 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.053203 B = 0.003023 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.157214 B = 9258.963013 C = 9606.870812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.326 4.674 3 O -0.869 6.869 4 C -0.505 4.505 5 C -0.030 4.030 6 C -0.167 4.167 7 C 0.080 3.920 8 C -0.344 4.344 9 C 0.195 3.805 10 N -0.592 5.592 11 C 0.376 3.624 12 C -0.365 4.365 13 H 0.099 0.901 14 C 0.057 3.943 15 N -0.690 5.690 16 Si 0.925 3.075 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.256 1.256 20 N -0.508 5.508 21 C 0.189 3.811 22 C -0.167 4.167 23 C -0.038 4.038 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.282 0.718 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -0.101 -12.910 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.525 4.475 3 O -0.865 6.865 4 C -0.603 4.603 5 C -0.050 4.050 6 C -0.187 4.187 7 C 0.078 3.922 8 C -0.354 4.354 9 C 0.018 3.982 10 N -0.310 5.310 11 C 0.145 3.855 12 C -0.397 4.397 13 H 0.117 0.883 14 C -0.172 4.172 15 N -0.309 5.309 16 Si 0.747 3.253 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.180 1.180 20 N -0.224 5.224 21 C 0.010 3.990 22 C -0.187 4.187 23 C -0.057 4.057 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.253 -0.477 -12.554 12.978 hybrid contribution -1.005 1.296 1.527 2.241 sum -4.259 0.819 -11.027 11.849 Atomic orbital electron populations 1.27797 1.23484 1.07669 1.06619 1.69065 0.85522 0.99273 0.93655 1.93067 1.73072 1.37428 1.82910 1.27086 1.18334 0.99638 1.15282 1.20589 0.94642 0.93155 0.96586 1.21248 1.05116 0.99593 0.92721 1.18919 0.88680 0.92363 0.92275 1.19783 1.25279 0.96561 0.93763 1.22734 0.89041 0.98124 0.88259 1.68676 1.22397 1.17617 1.22323 1.19983 0.88906 0.83128 0.93517 1.19621 1.34501 0.92414 0.93181 0.88303 1.26285 0.94189 0.96728 1.00016 1.70104 1.24990 1.03310 1.32546 0.86020 0.79676 0.79083 0.80477 1.18895 1.19620 1.17999 1.69359 1.17620 1.36511 0.98901 1.23089 0.89032 0.91926 0.94910 1.21203 1.05304 0.95461 0.96717 1.20841 0.93945 0.98595 0.92345 0.90296 0.88252 0.87320 0.85461 0.85719 0.84974 0.90685 0.84845 0.86298 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.41 10.70 101.05 1.08 -3.32 16 2 S 1.33 13.28 14.18 -107.50 -1.52 11.75 16 3 O -0.87 -14.47 16.88 -35.23 -0.59 -15.06 16 4 C -0.50 -6.85 5.62 -39.46 -0.22 -7.07 16 5 C -0.03 -0.38 9.73 -39.64 -0.39 -0.76 16 6 C -0.17 -2.59 9.45 -39.17 -0.37 -2.96 16 7 C 0.08 1.47 5.88 -104.87 -0.62 0.85 16 8 C -0.34 -7.40 5.94 -104.28 -0.62 -8.02 16 9 C 0.19 4.40 10.70 -16.83 -0.18 4.22 16 10 N -0.59 -15.25 10.34 -12.41 -0.13 -15.38 16 11 C 0.38 10.16 7.35 -158.17 -1.16 9.00 16 12 C -0.36 -9.43 9.35 -37.78 -0.35 -9.78 16 13 H 0.10 2.44 7.85 -52.49 -0.41 2.02 16 14 C 0.06 1.35 5.50 -17.34 -0.10 1.25 16 15 N -0.69 -16.87 11.40 55.56 0.63 -16.23 16 16 Si 0.92 17.13 29.56 -169.99 -5.03 12.10 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 N -0.51 -13.37 7.83 -12.41 -0.10 -13.46 16 21 C 0.19 4.29 10.70 -16.83 -0.18 4.11 16 22 C -0.17 -2.92 9.45 -39.17 -0.37 -3.29 16 23 C -0.04 -0.62 9.43 -39.64 -0.37 -1.00 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16 29 H 0.13 2.57 6.33 -52.48 -0.33 2.23 16 30 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 31 H 0.13 2.60 6.33 -52.49 -0.33 2.27 16 32 H 0.12 1.96 6.29 -52.49 -0.33 1.63 16 33 H 0.12 1.93 7.44 -52.49 -0.39 1.54 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -34.21 302.63 -8.98 -43.18 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.95 Total: 5.31 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.85 Total: -16.77 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.41 Total: -45.08 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.59 Total: -15.06 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 13.28 SS G_CDS: -1.52 Total: 11.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.21 -8.98 -43.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.111 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds