Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 109.46624 * 2 1 4 4 C 1.76197 * 103.00167 * 109.05276 * 2 1 3 5 5 C 1.38408 * 119.85196 * 90.00323 * 4 2 1 6 6 C 1.37912 * 120.15399 * 180.02562 * 5 4 2 7 7 C 1.39659 * 119.84470 * 359.97438 * 6 5 4 8 8 C 1.47940 * 120.14321 * 179.97438 * 7 6 5 9 9 C 1.40427 * 120.78695 * 180.02562 * 8 7 6 10 10 N 1.31594 * 119.09445 * 180.02562 * 9 8 7 11 11 C 1.33645 * 120.82396 * 0.02562 * 10 9 8 12 12 C 1.41094 * 119.12560 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00541 * 359.97438 * 12 11 10 14 14 C 1.40148 * 119.99489 * 179.97438 * 12 11 10 15 15 N 1.30652 * 120.00351 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99686 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46629 * 90.00769 * 16 14 12 18 18 H 1.48495 * 109.46893 * 210.00086 * 16 14 12 19 19 H 1.48494 * 109.47206 * 330.00527 * 16 14 12 20 20 N 1.33640 * 121.73978 * 359.97438 * 11 10 9 21 21 C 1.31591 * 120.82751 * 0.02562 * 20 11 10 22 22 C 1.39651 * 119.70753 * 0.25532 * 7 6 5 23 23 C 1.37917 * 119.84551 * 359.51320 * 22 7 6 24 24 H 1.08995 * 109.47389 * 310.94733 * 1 2 3 25 25 H 1.09002 * 109.47113 * 70.94766 * 1 2 3 26 26 H 1.09003 * 109.47059 * 190.94542 * 1 2 3 27 27 H 1.08005 * 119.92432 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.08057 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.45563 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00474 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.45030 * 180.02562 * 21 20 11 32 32 H 1.08001 * 120.07724 * 179.72167 * 22 7 6 33 33 H 1.08001 * 119.92524 * 180.23389 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2875 1.3398 0.0000 4 6 2.2104 -0.5604 1.6228 5 6 2.3654 -1.9142 1.8654 6 6 2.6752 -2.3598 3.1332 7 6 2.8329 -1.4414 4.1735 8 6 3.1646 -1.9121 5.5362 9 6 3.3258 -1.0005 6.5922 10 7 3.6212 -1.4557 7.7910 11 6 3.7681 -2.7661 8.0089 12 6 4.0855 -3.2148 9.3084 13 1 4.2070 -2.5026 10.1111 14 6 4.2433 -4.5849 9.5575 15 7 4.0969 -5.4466 8.5863 16 14 4.6642 -5.1791 11.2778 17 1 3.4116 -5.4394 12.0318 18 1 5.4576 -6.4311 11.1887 19 1 5.4578 -4.1390 11.9803 20 7 3.6223 -3.6625 7.0285 21 6 3.3269 -3.2809 5.8043 22 6 2.6703 -0.0772 3.9228 23 6 2.3653 0.3551 2.6492 24 1 -0.3634 0.6735 0.7762 25 1 -0.3633 0.3355 -0.9714 26 1 -0.3633 -1.0090 0.1951 27 1 2.2428 -2.6234 1.0601 28 1 2.7955 -3.4165 3.3213 29 1 3.2088 0.0597 6.4228 30 1 4.2064 -6.3949 8.7586 31 1 3.2101 -4.0106 5.0167 32 1 2.7865 0.6379 4.7238 33 1 2.2430 1.4101 2.4531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241484665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = 5.447671 kcal Electronic energy + Delta-G solvation = -18924.738126 eV Core-core repulsion = 15847.935217 eV Total energy + Delta-G solvation = -3076.802909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09659 -39.58848 -36.79611 -35.92557 -34.03834 -33.67461 -31.84992 -30.75256 -29.55899 -27.93530 -25.26422 -24.55787 -22.89219 -22.33702 -19.95250 -19.01879 -18.06855 -17.73024 -17.07524 -16.63191 -16.31840 -15.74192 -15.62259 -15.11613 -15.09211 -14.68332 -14.43882 -14.29159 -13.89947 -13.76640 -13.61258 -13.25810 -13.17031 -12.95349 -12.80906 -12.64132 -11.99740 -11.92794 -11.51437 -11.35297 -11.28919 -11.02520 -10.72436 -9.86132 -9.47390 -9.38833 -9.05637 -8.57177 -6.81853 -0.30533 0.53002 0.78356 0.97244 1.17034 1.37958 1.50205 1.54666 1.91327 2.14727 2.58127 2.90343 3.11766 3.77114 3.83071 3.86854 3.96046 4.07901 4.16296 4.28657 4.37677 4.51072 4.54487 4.64064 4.84271 4.95264 4.98618 5.18024 5.22164 5.23537 5.35835 5.39474 5.70179 5.81802 6.01728 6.10444 6.37048 6.46147 7.03910 8.07340 8.21535 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.053203 B = 0.003023 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.157214 B = 9258.963013 C = 9606.870812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.407 4.593 3 O -0.933 6.933 4 C -0.498 4.498 5 C -0.016 4.016 6 C -0.166 4.166 7 C 0.044 3.956 8 C -0.329 4.329 9 C 0.173 3.827 10 N -0.622 5.622 11 C 0.349 3.651 12 C -0.410 4.410 13 H 0.094 0.906 14 C 0.020 3.980 15 N -0.727 5.727 16 Si 1.004 2.996 17 H -0.258 1.258 18 H -0.258 1.258 19 H -0.257 1.257 20 N -0.537 5.537 21 C 0.173 3.827 22 C -0.174 4.174 23 C -0.063 4.063 24 H 0.056 0.944 25 H 0.122 0.878 26 H 0.139 0.861 27 H 0.192 0.808 28 H 0.141 0.859 29 H 0.155 0.845 30 H 0.291 0.709 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 -1.388 -15.850 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.605 4.395 3 O -0.929 6.929 4 C -0.595 4.595 5 C -0.034 4.034 6 C -0.185 4.185 7 C 0.042 3.958 8 C -0.338 4.338 9 C 0.000 4.000 10 N -0.341 5.341 11 C 0.116 3.884 12 C -0.443 4.443 13 H 0.112 0.888 14 C -0.206 4.206 15 N -0.348 5.348 16 Si 0.822 3.178 17 H -0.182 1.182 18 H -0.181 1.181 19 H -0.181 1.181 20 N -0.254 5.254 21 C -0.003 4.003 22 C -0.193 4.193 23 C -0.082 4.082 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.158 0.842 27 H 0.209 0.791 28 H 0.158 0.842 29 H 0.172 0.828 30 H 0.103 0.897 31 H 0.182 0.818 32 H 0.132 0.868 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.299 -1.731 -15.547 16.223 hybrid contribution -0.871 1.885 1.947 2.846 sum -5.169 0.154 -13.601 14.551 Atomic orbital electron populations 1.27780 1.21250 1.09275 1.07302 1.68345 0.85500 0.96100 0.89550 1.92954 1.75829 1.41001 1.83093 1.27803 1.15355 1.00035 1.16282 1.21246 0.91665 0.93592 0.96941 1.21603 1.03752 0.99931 0.93189 1.18893 0.91998 0.93339 0.91598 1.20059 1.22660 0.95953 0.95156 1.23208 0.89100 0.99593 0.88099 1.68676 1.24005 1.17527 1.23921 1.20391 0.89764 0.83749 0.94477 1.19879 1.37460 0.93922 0.93053 0.88829 1.27181 0.93295 0.95803 1.04304 1.70139 1.25910 1.03960 1.34755 0.84888 0.79556 0.78633 0.74758 1.18208 1.18134 1.18058 1.69331 1.19110 1.36951 0.99990 1.23631 0.88677 0.93266 0.94734 1.21250 1.05394 0.95309 0.97396 1.20932 0.95472 0.98965 0.92807 0.92477 0.85941 0.84217 0.79105 0.84178 0.82801 0.89744 0.81800 0.86772 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -6.41 10.70 113.37 1.21 -5.20 16 2 S 1.41 22.51 14.18 -56.49 -0.80 21.71 16 3 O -0.93 -29.10 16.88 -148.98 -2.52 -31.62 16 4 C -0.50 -11.77 5.62 22.35 0.13 -11.64 16 5 C -0.02 -0.31 9.73 22.23 0.22 -0.10 16 6 C -0.17 -4.61 9.45 22.54 0.21 -4.39 16 7 C 0.04 1.57 5.88 -20.02 -0.12 1.45 16 8 C -0.33 -14.39 5.94 -19.64 -0.12 -14.51 16 9 C 0.17 8.18 10.70 85.26 0.91 9.09 16 10 N -0.62 -33.85 10.34 -193.16 -2.00 -35.85 16 11 C 0.35 19.92 7.35 134.91 0.99 20.91 16 12 C -0.41 -22.40 9.35 23.43 0.22 -22.18 16 13 H 0.09 4.94 7.85 -2.91 -0.02 4.91 16 14 C 0.02 0.96 5.50 85.33 0.47 1.43 16 15 N -0.73 -36.62 11.40 21.86 0.25 -36.37 16 16 Si 1.00 35.82 29.56 68.60 2.03 37.85 16 17 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 20 N -0.54 -29.36 7.83 -193.17 -1.51 -30.87 16 21 C 0.17 7.98 10.70 85.26 0.91 8.90 16 22 C -0.17 -6.05 9.45 22.54 0.21 -5.84 16 23 C -0.06 -1.98 9.43 22.23 0.21 -1.77 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.14 3.44 6.29 -2.91 -0.02 3.42 16 29 H 0.15 6.27 6.33 -2.91 -0.02 6.25 16 30 H 0.29 12.85 8.29 -92.71 -0.77 12.08 16 31 H 0.17 6.25 6.33 -2.91 -0.02 6.23 16 32 H 0.11 3.91 6.29 -2.91 -0.02 3.89 16 33 H 0.11 3.55 7.44 -2.91 -0.02 3.53 16 Total: -1.00 -80.44 302.63 2.07 -78.37 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 1.15 Total: 20.60 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 5.46 Total: -23.84 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.26 Total: -103.08 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.52 Total: -31.62 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 22.51 SS G_CDS: -0.80 Total: 21.71 kcal Total: -80.44 2.07 -78.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.821 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds