Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42106 * 109.46789 * 2 1 4 4 C 1.76198 * 103.00030 * 250.94961 * 2 1 3 5 5 C 1.38408 * 119.85521 * 89.99983 * 4 2 1 6 6 C 1.37912 * 120.15435 * 179.97438 * 5 4 2 7 7 C 1.39659 * 119.84470 * 0.02562 * 6 5 4 8 8 C 1.47940 * 120.14321 * 179.97438 * 7 6 5 9 9 C 1.40427 * 120.78695 * 180.02562 * 8 7 6 10 10 N 1.31594 * 119.09445 * 180.02562 * 9 8 7 11 11 C 1.33645 * 120.82396 * 0.02562 * 10 9 8 12 12 C 1.41094 * 119.12560 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00541 * 359.97438 * 12 11 10 14 14 C 1.40148 * 119.99489 * 179.97438 * 12 11 10 15 15 N 1.30652 * 120.00351 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99686 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46804 * 60.00407 * 16 14 12 18 18 H 1.48504 * 109.46720 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47499 * 300.00280 * 16 14 12 20 20 N 1.33640 * 121.73978 * 359.97438 * 11 10 9 21 21 C 1.31591 * 120.82751 * 0.02562 * 20 11 10 22 22 C 1.39651 * 119.70753 * 0.25532 * 7 6 5 23 23 C 1.37918 * 119.84484 * 359.46531 * 22 7 6 24 24 H 1.08997 * 109.46797 * 169.05554 * 1 2 3 25 25 H 1.09004 * 109.47164 * 289.05045 * 1 2 3 26 26 H 1.08996 * 109.46884 * 49.05392 * 1 2 3 27 27 H 1.08005 * 119.92396 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.08057 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.45563 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00474 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.45030 * 180.02562 * 21 20 11 32 32 H 1.08001 * 120.07724 * 179.72167 * 22 7 6 33 33 H 1.08001 * 119.92529 * 180.27665 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3654 0.3552 -2.6492 6 6 2.6761 -0.0766 -3.9216 7 6 2.8339 -1.4412 -4.1733 8 6 3.1667 -1.9117 -5.5358 9 6 3.3279 -3.2806 -5.8042 10 7 3.6243 -3.6622 -7.0282 11 6 3.7722 -2.7655 -8.0081 12 6 4.0906 -3.2143 -9.3074 13 1 4.2121 -4.2701 -9.4994 14 6 4.2493 -2.2898 -10.3487 15 7 4.1029 -1.0125 -10.1163 16 14 4.6716 -2.8839 -12.0687 17 1 3.6022 -3.7921 -12.5551 18 1 4.7845 -1.7178 -12.9812 19 1 5.9644 -3.6138 -12.0368 20 7 3.6264 -1.4551 -7.7899 21 6 3.3300 -1.0000 -6.5913 22 6 2.6703 -2.3601 -3.1344 23 6 2.3653 -1.9142 -1.8655 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3634 0.3354 0.9714 26 1 -0.3633 0.6735 -0.7762 27 1 2.2427 1.4102 -2.4532 28 1 2.7964 0.6388 -4.7217 29 1 3.2102 -4.0104 -5.0168 30 1 4.2131 -0.3726 -10.8369 31 1 3.2132 0.0602 -6.4219 32 1 2.7865 -3.4170 -3.3234 33 1 2.2429 -2.6233 -1.0601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241484666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = 28.953476 kcal Electronic energy + Delta-G solvation = -18927.440018 eV Core-core repulsion = 15851.656397 eV Total energy + Delta-G solvation = -3075.783621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41348 -38.18196 -35.62674 -34.20477 -32.34630 -32.00561 -30.59155 -29.21693 -28.73493 -26.26955 -23.63816 -22.98609 -21.46601 -20.83365 -18.23801 -17.88014 -16.66127 -16.23661 -15.39772 -15.36158 -14.78985 -14.77158 -14.35638 -13.76999 -13.59410 -13.30403 -13.12479 -12.86614 -12.82486 -12.34365 -12.29238 -12.09517 -11.64358 -11.54051 -11.43855 -10.97626 -10.67515 -10.52820 -10.13895 -9.88935 -9.43432 -9.34792 -9.16793 -8.64467 -8.39595 -7.55375 -7.55058 -6.82616 -4.96870 1.02455 1.77765 1.94802 2.51518 2.79965 2.84690 2.89640 2.92601 3.00501 3.66444 3.91266 4.15865 4.50153 5.10114 5.12505 5.20141 5.24600 5.43204 5.57913 5.64347 5.69881 5.80355 5.87676 5.90084 6.07932 6.24439 6.25305 6.59032 6.60501 6.68994 6.72723 6.90693 7.28709 7.30165 7.43560 7.86290 8.19264 8.27496 8.84675 9.81246 10.00377 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.049768 B = 0.003048 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.474663 B = 9184.299602 C = 9563.996947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.326 4.674 3 O -0.869 6.869 4 C -0.505 4.505 5 C -0.038 4.038 6 C -0.165 4.165 7 C 0.080 3.920 8 C -0.344 4.344 9 C 0.196 3.804 10 N -0.592 5.592 11 C 0.376 3.624 12 C -0.365 4.365 13 H 0.099 0.901 14 C 0.057 3.943 15 N -0.690 5.690 16 Si 0.926 3.074 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.260 1.260 20 N -0.509 5.509 21 C 0.188 3.812 22 C -0.169 4.169 23 C -0.030 4.030 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.282 0.718 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -1.961 13.533 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.525 4.475 3 O -0.864 6.864 4 C -0.603 4.603 5 C -0.057 4.057 6 C -0.185 4.185 7 C 0.078 3.922 8 C -0.354 4.354 9 C 0.019 3.981 10 N -0.310 5.310 11 C 0.145 3.855 12 C -0.397 4.397 13 H 0.117 0.883 14 C -0.173 4.173 15 N -0.310 5.310 16 Si 0.748 3.252 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.184 1.184 20 N -0.224 5.224 21 C 0.010 3.990 22 C -0.189 4.189 23 C -0.050 4.050 24 H 0.127 0.873 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.260 -1.824 12.999 13.525 hybrid contribution -0.998 1.501 -1.597 2.409 sum -4.258 -0.323 11.402 12.176 Atomic orbital electron populations 1.27797 1.23492 1.07655 1.06625 1.69051 0.85528 0.99306 0.93654 1.93072 1.73057 1.37415 1.82901 1.27086 1.18343 0.99639 1.15282 1.20851 0.93879 0.98625 0.92345 1.21226 1.05005 0.95504 0.96768 1.18918 0.88675 0.92409 0.92226 1.19780 1.25299 0.96327 0.94010 1.22725 0.89077 0.92432 0.93831 1.68670 1.22419 1.39218 1.00700 1.19975 0.88928 0.84021 0.92609 1.19587 1.34535 0.95619 0.89968 0.88297 1.26294 0.94220 0.94577 1.02187 1.70098 1.24831 1.02109 1.33923 0.86067 0.80429 0.79456 0.79226 1.18394 1.19769 1.18383 1.69364 1.17620 1.15871 1.19565 1.23095 0.88988 0.98364 0.88588 1.21223 1.05423 0.99460 0.92767 1.20579 0.94710 0.93157 0.96549 0.87336 0.88256 0.90283 0.86533 0.86180 0.84775 0.90615 0.85052 0.85842 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.41 10.70 101.05 1.08 -3.33 16 2 S 1.33 13.28 14.18 -107.50 -1.52 11.76 16 3 O -0.87 -14.54 16.88 -35.23 -0.59 -15.14 16 4 C -0.50 -6.86 5.62 -39.46 -0.22 -7.08 16 5 C -0.04 -0.62 9.42 -39.64 -0.37 -1.00 16 6 C -0.17 -2.94 9.45 -39.17 -0.37 -3.31 16 7 C 0.08 1.47 5.88 -104.87 -0.62 0.86 16 8 C -0.34 -7.41 5.94 -104.28 -0.62 -8.03 16 9 C 0.20 4.28 10.70 -16.83 -0.18 4.10 16 10 N -0.59 -15.00 10.34 -12.41 -0.13 -15.13 16 11 C 0.38 10.16 7.35 -158.17 -1.16 9.00 16 12 C -0.36 -9.43 9.35 -37.78 -0.35 -9.78 16 13 H 0.10 2.41 7.85 -52.49 -0.41 2.00 16 14 C 0.06 1.35 5.50 -17.34 -0.10 1.25 16 15 N -0.69 -17.15 11.40 55.56 0.63 -16.52 16 16 Si 0.93 17.24 29.56 -169.99 -5.02 12.21 16 17 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 20 N -0.51 -13.59 7.83 -12.41 -0.10 -13.69 16 21 C 0.19 4.40 10.70 -16.83 -0.18 4.22 16 22 C -0.17 -2.57 9.45 -39.17 -0.37 -2.94 16 23 C -0.03 -0.37 9.73 -39.64 -0.39 -0.76 16 24 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.12 1.96 7.44 -52.48 -0.39 1.57 16 28 H 0.12 2.06 6.29 -52.49 -0.33 1.73 16 29 H 0.14 2.41 6.33 -52.48 -0.33 2.08 16 30 H 0.28 6.26 8.29 -40.82 -0.34 5.93 16 31 H 0.13 2.75 6.33 -52.49 -0.33 2.42 16 32 H 0.12 1.66 6.29 -52.49 -0.33 1.33 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -34.36 302.63 -8.98 -43.34 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.95 Total: 5.39 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -3.85 Total: -16.78 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.41 Total: -45.34 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.59 Total: -15.14 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.02 Total: 12.21 kcal Atomic # 16 Polarization: 13.28 SS G_CDS: -1.52 Total: 11.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.36 -8.98 -43.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.289 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds