Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42106 * 109.46789 * 2 1 4 4 C 1.76198 * 103.00030 * 250.94961 * 2 1 3 5 5 C 1.38408 * 119.85521 * 89.99983 * 4 2 1 6 6 C 1.37912 * 120.15435 * 179.97438 * 5 4 2 7 7 C 1.39659 * 119.84470 * 0.02562 * 6 5 4 8 8 C 1.47940 * 120.14321 * 179.97438 * 7 6 5 9 9 C 1.40427 * 120.78695 * 180.02562 * 8 7 6 10 10 N 1.31594 * 119.09445 * 180.02562 * 9 8 7 11 11 C 1.33645 * 120.82396 * 0.02562 * 10 9 8 12 12 C 1.41094 * 119.12560 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00541 * 359.97438 * 12 11 10 14 14 C 1.40148 * 119.99489 * 179.97438 * 12 11 10 15 15 N 1.30652 * 120.00351 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99686 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46804 * 60.00407 * 16 14 12 18 18 H 1.48504 * 109.46720 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47499 * 300.00280 * 16 14 12 20 20 N 1.33640 * 121.73978 * 359.97438 * 11 10 9 21 21 C 1.31591 * 120.82751 * 0.02562 * 20 11 10 22 22 C 1.39651 * 119.70753 * 0.25532 * 7 6 5 23 23 C 1.37918 * 119.84484 * 359.46531 * 22 7 6 24 24 H 1.08997 * 109.46797 * 169.05554 * 1 2 3 25 25 H 1.09004 * 109.47164 * 289.05045 * 1 2 3 26 26 H 1.08996 * 109.46884 * 49.05392 * 1 2 3 27 27 H 1.08005 * 119.92396 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.08057 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.45563 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00474 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.45030 * 180.02562 * 21 20 11 32 32 H 1.08001 * 120.07724 * 179.72167 * 22 7 6 33 33 H 1.08001 * 119.92529 * 180.27665 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3654 0.3552 -2.6492 6 6 2.6761 -0.0766 -3.9216 7 6 2.8339 -1.4412 -4.1733 8 6 3.1667 -1.9117 -5.5358 9 6 3.3279 -3.2806 -5.8042 10 7 3.6243 -3.6622 -7.0282 11 6 3.7722 -2.7655 -8.0081 12 6 4.0906 -3.2143 -9.3074 13 1 4.2121 -4.2701 -9.4994 14 6 4.2493 -2.2898 -10.3487 15 7 4.1029 -1.0125 -10.1163 16 14 4.6716 -2.8839 -12.0687 17 1 3.6022 -3.7921 -12.5551 18 1 4.7845 -1.7178 -12.9812 19 1 5.9644 -3.6138 -12.0368 20 7 3.6264 -1.4551 -7.7899 21 6 3.3300 -1.0000 -6.5913 22 6 2.6703 -2.3601 -3.1344 23 6 2.3653 -1.9142 -1.8655 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3634 0.3354 0.9714 26 1 -0.3633 0.6735 -0.7762 27 1 2.2427 1.4102 -2.4532 28 1 2.7964 0.6388 -4.7217 29 1 3.2102 -4.0104 -5.0168 30 1 4.2131 -0.3726 -10.8369 31 1 3.2132 0.0602 -6.4219 32 1 2.7865 -3.4170 -3.3234 33 1 2.2429 -2.6233 -1.0601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241484666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = 5.129735 kcal Electronic energy + Delta-G solvation = -18928.473093 eV Core-core repulsion = 15851.656397 eV Total energy + Delta-G solvation = -3076.816696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09702 -39.58880 -36.80099 -35.93269 -34.03566 -33.68335 -31.85131 -30.75548 -29.55964 -27.93910 -25.25980 -24.56779 -22.89636 -22.33640 -19.94846 -19.03590 -18.02129 -17.77147 -17.08313 -16.63050 -16.31320 -15.74824 -15.63243 -15.11496 -15.08960 -14.67473 -14.45163 -14.30171 -13.87671 -13.78523 -13.61857 -13.26087 -13.17514 -12.94986 -12.79756 -12.64306 -12.03592 -11.92732 -11.50932 -11.35555 -11.29097 -11.02520 -10.73307 -9.86093 -9.47960 -9.39055 -9.06046 -8.57614 -6.82500 -0.30606 0.52860 0.77903 0.98201 1.17336 1.36497 1.51464 1.51925 1.91241 2.13094 2.57692 2.90409 3.11706 3.80963 3.82993 3.83487 3.96161 4.07216 4.16385 4.28692 4.37562 4.51208 4.54607 4.64188 4.83985 4.93979 4.98777 5.18482 5.22063 5.22936 5.36099 5.39452 5.70087 5.81661 6.00776 6.10986 6.37520 6.45326 7.03686 8.06650 8.20790 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.049768 B = 0.003048 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.474663 B = 9184.299602 C = 9563.996947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.408 4.592 3 O -0.934 6.934 4 C -0.498 4.498 5 C -0.063 4.063 6 C -0.176 4.176 7 C 0.044 3.956 8 C -0.329 4.329 9 C 0.185 3.815 10 N -0.615 5.615 11 C 0.349 3.651 12 C -0.409 4.409 13 H 0.100 0.900 14 C 0.017 3.983 15 N -0.734 5.734 16 Si 1.005 2.995 17 H -0.254 1.254 18 H -0.262 1.262 19 H -0.254 1.254 20 N -0.542 5.542 21 C 0.162 3.838 22 C -0.163 4.163 23 C -0.015 4.015 24 H 0.141 0.859 25 H 0.122 0.878 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.178 0.822 30 H 0.289 0.711 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -3.685 16.602 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.606 4.394 3 O -0.930 6.930 4 C -0.595 4.595 5 C -0.083 4.083 6 C -0.196 4.196 7 C 0.042 3.958 8 C -0.338 4.338 9 C 0.011 3.989 10 N -0.334 5.334 11 C 0.116 3.884 12 C -0.442 4.442 13 H 0.118 0.882 14 C -0.208 4.208 15 N -0.355 5.355 16 Si 0.823 3.177 17 H -0.178 1.178 18 H -0.186 1.186 19 H -0.178 1.178 20 N -0.259 5.259 21 C -0.014 4.014 22 C -0.182 4.182 23 C -0.034 4.034 24 H 0.159 0.841 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.194 0.806 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.315 -3.528 16.127 17.063 hybrid contribution -0.863 2.137 -2.009 3.057 sum -5.179 -1.392 14.117 15.102 Atomic orbital electron populations 1.27782 1.21244 1.09317 1.07269 1.68294 0.85488 0.96088 0.89507 1.92957 1.75866 1.41072 1.83120 1.27807 1.15362 1.00148 1.16158 1.20910 0.95577 0.98928 0.92835 1.21238 1.05501 0.95523 0.97311 1.18897 0.92007 0.93243 0.91684 1.20061 1.22649 0.95995 0.95138 1.23391 0.88232 0.93524 0.93786 1.68694 1.23721 1.39239 1.01779 1.20398 0.89746 0.84516 0.93725 1.19889 1.37354 0.96213 0.90789 0.88241 1.27267 0.93174 0.94291 1.06050 1.70174 1.26311 1.03423 1.35569 0.84914 0.80186 0.79106 0.73477 1.17785 1.18610 1.17822 1.69320 1.19271 1.16206 1.21133 1.23450 0.89523 0.99505 0.88874 1.21626 1.03620 1.00028 0.92964 1.21281 0.91551 0.93473 0.97056 0.84092 0.85941 0.92587 0.87762 0.87399 0.80552 0.89971 0.84064 0.83552 0.78826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -6.40 10.70 113.37 1.21 -5.19 16 2 S 1.41 22.53 14.18 -56.49 -0.80 21.73 16 3 O -0.93 -29.51 16.88 -148.98 -2.52 -32.02 16 4 C -0.50 -11.77 5.62 22.35 0.13 -11.64 16 5 C -0.06 -2.05 9.42 22.23 0.21 -1.84 16 6 C -0.18 -6.34 9.45 22.54 0.21 -6.13 16 7 C 0.04 1.57 5.88 -20.02 -0.12 1.45 16 8 C -0.33 -14.39 5.94 -19.64 -0.12 -14.51 16 9 C 0.18 8.07 10.70 85.26 0.91 8.98 16 10 N -0.62 -32.12 10.34 -193.16 -2.00 -34.12 16 11 C 0.35 19.89 7.35 134.91 0.99 20.89 16 12 C -0.41 -22.29 9.35 23.43 0.22 -22.07 16 13 H 0.10 5.12 7.85 -2.91 -0.02 5.10 16 14 C 0.02 0.85 5.50 85.33 0.47 1.32 16 15 N -0.73 -38.45 11.40 21.86 0.25 -38.20 16 16 Si 1.01 36.28 29.56 68.60 2.03 38.31 16 17 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 19 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 20 N -0.54 -30.76 7.83 -193.17 -1.51 -32.27 16 21 C 0.16 8.02 10.70 85.26 0.91 8.94 16 22 C -0.16 -4.33 9.45 22.54 0.21 -4.12 16 23 C -0.02 -0.29 9.73 22.23 0.22 -0.07 16 24 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 3.59 7.44 -2.91 -0.02 3.56 16 28 H 0.11 3.98 6.29 -2.91 -0.02 3.96 16 29 H 0.18 5.91 6.33 -2.91 -0.02 5.89 16 30 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 31 H 0.14 6.40 6.33 -2.91 -0.02 6.38 16 32 H 0.15 3.20 6.29 -2.91 -0.02 3.18 16 33 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -81.98 302.63 2.07 -79.92 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.15 Total: 20.65 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.46 Total: -24.00 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.26 Total: -104.60 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -2.52 Total: -32.02 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 22.53 SS G_CDS: -0.80 Total: 21.73 kcal Total: -81.98 2.07 -79.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.048 kcal (2) G-P(sol) polarization free energy of solvation -81.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds