Wall clock time and date at job start Tue Mar 31 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76198 * 99.99947 * 2 1 4 4 N 1.32601 * 119.07619 * 179.97438 * 3 2 1 5 5 C 1.32099 * 120.87376 * 180.02562 * 4 3 2 6 6 C 1.39800 * 119.04123 * 0.02562 * 5 4 3 7 7 C 1.48262 * 120.83866 * 179.97438 * 6 5 4 8 8 C 1.39299 * 120.16289 * 309.98248 * 7 6 5 9 9 C 1.38015 * 119.94260 * 180.02562 * 8 7 6 10 10 C 1.38444 * 120.27390 * 359.97438 * 9 8 7 11 11 C 1.38125 * 120.32413 * 359.97438 * 10 9 8 12 12 C 1.38743 * 120.04918 * 0.02562 * 11 10 9 13 13 O 1.35678 * 120.13491 * 179.97438 * 12 11 10 14 14 C 1.34811 * 116.99762 * 354.40051 * 13 12 11 15 15 H 1.08002 * 120.00039 * 5.06751 * 14 13 12 16 16 C 1.38640 * 119.99934 * 185.05914 * 14 13 12 17 17 N 1.31558 * 119.99970 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47174 * 90.00050 * 18 16 14 20 20 H 1.48502 * 109.46763 * 209.99932 * 18 16 14 21 21 H 1.48494 * 109.47058 * 329.99907 * 18 16 14 22 22 C 1.39795 * 118.32115 * 0.27449 * 6 5 4 23 23 N 1.32104 * 119.04361 * 359.44606 * 22 6 5 24 24 H 1.08998 * 109.47396 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.46816 * 60.00343 * 1 2 3 26 26 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.07989 * 120.48507 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.02807 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.86663 * 180.02562 * 9 8 7 30 30 H 1.08002 * 119.83858 * 180.28266 * 10 9 8 31 31 H 1.08000 * 119.97365 * 180.02562 * 11 10 9 32 32 H 0.97002 * 120.00358 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.47990 * 179.72260 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.3691 2.1686 0.0005 5 6 3.6392 3.4617 0.0010 6 6 2.5815 4.3759 0.0016 7 6 2.8389 5.8360 0.0028 8 6 3.7224 6.3902 0.9262 9 6 3.9583 7.7500 0.9235 10 6 3.3206 8.5672 0.0059 11 6 2.4432 8.0294 -0.9154 12 6 2.1961 6.6642 -0.9248 13 8 1.3342 6.1341 -1.8286 14 6 0.6622 6.9996 -2.6140 15 1 0.8814 8.0560 -2.5644 16 6 -0.3102 6.5336 -3.4854 17 7 -0.5775 5.2468 -3.5455 18 14 -1.2409 7.7327 -4.5742 19 1 -0.5185 7.8959 -5.8613 20 1 -2.6052 7.2077 -4.8354 21 1 -1.3388 9.0477 -3.8914 22 6 1.2750 3.8785 0.0075 23 7 1.0865 2.5710 0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6621 3.8077 0.0010 28 1 4.2218 5.7564 1.6441 29 1 4.6439 8.1783 1.6397 30 1 3.5139 9.6298 0.0071 31 1 1.9491 8.6721 -1.6290 32 1 -1.2575 4.9206 -4.1555 33 1 0.4319 4.5535 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241627793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:42 Heat of formation + Delta-G solvation = 42.744094 kcal Electronic energy + Delta-G solvation = -19666.964869 eV Core-core repulsion = 16591.779253 eV Total energy + Delta-G solvation = -3075.185615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43614 -39.02163 -36.54950 -33.35694 -32.94938 -32.36198 -29.50052 -28.89981 -28.43019 -25.55267 -24.27073 -24.03262 -21.60096 -21.01187 -18.23669 -18.07926 -17.28504 -17.02939 -15.59095 -14.97064 -14.85581 -14.66077 -14.37219 -13.90335 -13.78652 -13.65588 -13.25301 -13.18397 -13.07933 -12.72156 -12.38505 -11.82403 -11.52735 -11.39214 -11.02489 -10.93724 -10.71626 -10.55292 -10.39697 -10.25833 -9.75859 -9.51126 -8.98744 -8.93534 -8.24765 -7.60612 -7.17984 -6.58670 -4.18081 1.03413 1.52857 1.56906 2.06914 2.21854 2.35438 3.04832 3.05744 3.10574 3.84251 4.08736 4.40751 4.60638 4.94158 5.01610 5.07084 5.10378 5.24172 5.29831 5.38620 5.48712 5.62594 5.70196 5.95375 5.99815 6.11055 6.35206 6.51040 6.58977 6.72638 6.92472 7.04620 7.19508 7.21966 7.35448 7.62817 7.83819 8.28631 8.85687 9.50386 10.57333 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.006210 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.381250 B = 4507.611372 C = 6508.574789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.023 6.023 3 C 0.275 3.725 4 N -0.505 5.505 5 C 0.154 3.846 6 C -0.111 4.111 7 C -0.136 4.136 8 C -0.055 4.055 9 C -0.213 4.213 10 C -0.065 4.065 11 C -0.230 4.230 12 C 0.166 3.834 13 O -0.167 6.167 14 C -0.396 4.396 15 H 0.094 0.906 16 C 0.043 3.957 17 N -0.852 5.852 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C 0.196 3.804 23 N -0.517 5.517 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -2.302 6.890 8.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.209 5.791 3 C -0.100 4.100 4 N -0.221 5.221 5 C -0.015 4.015 6 C -0.118 4.118 7 C -0.138 4.138 8 C -0.074 4.074 9 C -0.232 4.232 10 C -0.083 4.083 11 C -0.249 4.249 12 C 0.110 3.890 13 O -0.069 6.069 14 C -0.472 4.472 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.486 5.486 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C 0.027 3.973 23 N -0.233 5.233 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.185 0.815 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.637 -4.741 6.679 8.962 hybrid contribution -1.114 2.898 -0.743 3.192 sum 2.523 -1.843 5.937 6.709 Atomic orbital electron populations 1.23495 0.94119 1.05707 1.07488 1.85404 1.06991 0.94994 1.91676 1.24634 0.87563 1.00033 0.97787 1.68325 1.20992 1.17095 1.15670 1.23268 0.99566 0.87186 0.91459 1.20291 0.95122 0.94701 1.01707 1.17484 1.05784 0.89724 1.00852 1.20701 0.95459 0.94928 0.96278 1.20535 1.05884 0.93523 1.03258 1.20871 0.94758 0.98676 0.94014 1.21127 1.04903 0.94984 1.03906 1.19289 0.90145 0.91117 0.88418 1.83948 1.46830 1.35294 1.40806 1.21347 1.17503 0.90155 1.18220 0.88872 1.25297 0.96466 0.96959 0.97516 1.70036 1.30591 1.12601 1.35337 0.85715 0.78729 0.79361 0.79697 1.19822 1.20159 1.19091 1.23340 0.96557 0.90337 0.87061 1.68664 1.33939 1.04703 1.15996 0.89297 0.88888 0.88133 0.81543 0.86777 0.87218 0.87219 0.85181 0.91809 0.81098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.61 101.05 0.97 -0.80 16 2 S -0.02 -0.36 22.89 -107.50 -2.46 -2.82 16 3 C 0.28 5.28 7.85 -90.76 -0.71 4.57 16 4 N -0.50 -9.67 10.38 -13.16 -0.14 -9.81 16 5 C 0.15 2.77 10.84 -16.85 -0.18 2.59 16 6 C -0.11 -2.19 5.28 -104.61 -0.55 -2.74 16 7 C -0.14 -2.66 5.52 -104.73 -0.58 -3.24 16 8 C -0.06 -0.91 9.54 -39.27 -0.37 -1.29 16 9 C -0.21 -3.35 10.03 -39.59 -0.40 -3.74 16 10 C -0.06 -1.09 10.03 -39.55 -0.40 -1.48 16 11 C -0.23 -4.60 9.16 -39.44 -0.36 -4.96 16 12 C 0.17 3.69 6.58 -38.74 -0.25 3.44 16 13 O -0.17 -4.36 8.21 0.33 0.00 -4.35 16 14 C -0.40 -10.35 9.49 30.88 0.29 -10.05 16 15 H 0.09 2.25 5.21 -52.49 -0.27 1.97 16 16 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 17 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 18 Si 0.94 19.64 29.55 -169.99 -5.02 14.61 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 C 0.20 4.08 10.11 -16.85 -0.17 3.91 16 23 N -0.52 -10.44 9.10 -13.16 -0.12 -10.56 16 24 H 0.09 1.14 8.11 -51.92 -0.42 0.72 16 25 H 0.09 1.34 8.11 -51.91 -0.42 0.92 16 26 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.17 3.69 7.79 -52.49 -0.41 3.28 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -29.57 308.20 -8.22 -37.79 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.07 Total: 6.30 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.81 Total: -12.77 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.50 Total: -43.41 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.00 Total: -4.35 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.46 Total: -2.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.57 -8.22 -37.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241627793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.532 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds