Wall clock time and date at job start Tue Mar 31 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76198 * 99.99947 * 2 1 4 4 N 1.32601 * 119.07619 * 179.97438 * 3 2 1 5 5 C 1.32099 * 120.87376 * 180.02562 * 4 3 2 6 6 C 1.39800 * 119.04123 * 0.02562 * 5 4 3 7 7 C 1.48262 * 120.83866 * 179.97438 * 6 5 4 8 8 C 1.39299 * 120.16289 * 309.98248 * 7 6 5 9 9 C 1.38015 * 119.94260 * 180.02562 * 8 7 6 10 10 C 1.38444 * 120.27390 * 359.97438 * 9 8 7 11 11 C 1.38125 * 120.32413 * 359.97438 * 10 9 8 12 12 C 1.38743 * 120.04918 * 0.02562 * 11 10 9 13 13 O 1.35678 * 120.13491 * 179.97438 * 12 11 10 14 14 C 1.34811 * 116.99762 * 354.40051 * 13 12 11 15 15 H 1.08002 * 120.00039 * 5.06751 * 14 13 12 16 16 C 1.38640 * 119.99934 * 185.05914 * 14 13 12 17 17 N 1.31558 * 119.99970 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47174 * 90.00050 * 18 16 14 20 20 H 1.48502 * 109.46763 * 209.99932 * 18 16 14 21 21 H 1.48494 * 109.47058 * 329.99907 * 18 16 14 22 22 C 1.39795 * 118.32115 * 0.27449 * 6 5 4 23 23 N 1.32104 * 119.04361 * 359.44606 * 22 6 5 24 24 H 1.08998 * 109.47396 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.46816 * 60.00343 * 1 2 3 26 26 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.07989 * 120.48507 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.02807 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.86663 * 180.02562 * 9 8 7 30 30 H 1.08002 * 119.83858 * 180.28266 * 10 9 8 31 31 H 1.08000 * 119.97365 * 180.02562 * 11 10 9 32 32 H 0.97002 * 120.00358 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.47990 * 179.72260 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.3691 2.1686 0.0005 5 6 3.6392 3.4617 0.0010 6 6 2.5815 4.3759 0.0016 7 6 2.8389 5.8360 0.0028 8 6 3.7224 6.3902 0.9262 9 6 3.9583 7.7500 0.9235 10 6 3.3206 8.5672 0.0059 11 6 2.4432 8.0294 -0.9154 12 6 2.1961 6.6642 -0.9248 13 8 1.3342 6.1341 -1.8286 14 6 0.6622 6.9996 -2.6140 15 1 0.8814 8.0560 -2.5644 16 6 -0.3102 6.5336 -3.4854 17 7 -0.5775 5.2468 -3.5455 18 14 -1.2409 7.7327 -4.5742 19 1 -0.5185 7.8959 -5.8613 20 1 -2.6052 7.2077 -4.8354 21 1 -1.3388 9.0477 -3.8914 22 6 1.2750 3.8785 0.0075 23 7 1.0865 2.5710 0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6621 3.8077 0.0010 28 1 4.2218 5.7564 1.6441 29 1 4.6439 8.1783 1.6397 30 1 3.5139 9.6298 0.0071 31 1 1.9491 8.6721 -1.6290 32 1 -1.2575 4.9206 -4.1555 33 1 0.4319 4.5535 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241627793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:42 Heat of formation + Delta-G solvation = 25.587128 kcal Electronic energy + Delta-G solvation = -19667.708850 eV Core-core repulsion = 16591.779253 eV Total energy + Delta-G solvation = -3075.929597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93451 -40.60626 -38.13617 -34.85936 -34.49640 -34.15591 -30.93940 -30.26566 -29.69395 -27.39517 -25.73682 -25.55409 -23.16067 -22.47936 -19.86014 -19.57270 -18.93062 -18.54966 -17.09465 -16.43883 -16.34774 -16.22624 -15.91700 -15.47766 -15.31693 -14.97416 -14.72826 -14.61403 -14.41735 -14.27393 -13.56510 -13.46840 -13.09543 -12.81056 -12.58937 -12.39703 -12.16135 -12.11463 -11.92110 -11.64353 -11.22372 -11.16314 -10.82149 -10.45367 -9.65856 -9.07222 -8.61044 -8.47597 -6.14721 -0.45702 0.04372 0.21708 0.60928 0.75369 1.16803 1.33994 1.42142 1.50044 2.14596 2.57670 2.84125 3.11722 3.18376 3.43239 3.57674 3.64657 3.78405 4.05943 4.25633 4.29305 4.31273 4.33920 4.58924 4.66933 4.85782 4.93828 5.02890 5.13368 5.15631 5.24339 5.62666 5.64953 5.75745 5.84439 5.99191 6.20764 6.77840 6.96915 7.74811 8.72905 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.006210 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.381250 B = 4507.611372 C = 6508.574789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S 0.001 5.999 3 C 0.256 3.744 4 N -0.514 5.514 5 C 0.163 3.837 6 C -0.123 4.123 7 C -0.140 4.140 8 C -0.052 4.052 9 C -0.188 4.188 10 C -0.062 4.062 11 C -0.245 4.245 12 C 0.129 3.871 13 O -0.215 6.215 14 C -0.412 4.412 15 H 0.103 0.897 16 C -0.016 4.016 17 N -0.911 5.911 18 Si 1.011 2.989 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.251 1.251 22 C 0.177 3.823 23 N -0.530 5.530 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.204 0.796 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.121 0.879 32 H 0.270 0.730 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -1.335 8.560 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.233 5.767 3 C -0.118 4.118 4 N -0.230 5.230 5 C -0.006 4.006 6 C -0.131 4.131 7 C -0.142 4.142 8 C -0.070 4.070 9 C -0.206 4.206 10 C -0.080 4.080 11 C -0.264 4.264 12 C 0.077 3.923 13 O -0.120 6.120 14 C -0.488 4.488 15 H 0.120 0.880 16 C -0.215 4.215 17 N -0.548 5.548 18 Si 0.832 3.168 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.175 1.175 22 C 0.009 3.991 23 N -0.248 5.248 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.158 0.842 27 H 0.220 0.780 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.164 0.836 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.734 -3.745 8.394 10.834 hybrid contribution -1.518 2.590 -0.986 3.160 sum 4.217 -1.155 7.408 8.602 Atomic orbital electron populations 1.23590 0.92358 1.07914 1.06514 1.85269 1.08868 0.91792 1.90759 1.25424 0.87515 1.01878 0.97019 1.68455 1.20832 1.17533 1.16148 1.23807 1.00601 0.86606 0.89559 1.20383 0.94929 0.95329 1.02420 1.17789 1.05986 0.89556 1.00898 1.21151 0.94237 0.96059 0.95522 1.21127 1.04312 0.92888 1.02266 1.21301 0.93147 1.00804 0.92703 1.21267 1.06090 0.94068 1.05020 1.19875 0.90477 0.92780 0.89130 1.83937 1.49108 1.36061 1.42923 1.21777 1.17792 0.90796 1.18408 0.88008 1.26439 0.97357 0.98704 0.98994 1.70193 1.32352 1.14878 1.37398 0.84676 0.77058 0.77424 0.77686 1.19216 1.20005 1.17493 1.23147 0.96866 0.90674 0.88375 1.68648 1.34677 1.04592 1.16841 0.89344 0.90735 0.84216 0.77971 0.83268 0.82697 0.83588 0.86153 0.92133 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.61 113.37 1.09 -2.27 16 2 S 0.00 0.02 22.89 -56.49 -1.29 -1.28 16 3 C 0.26 9.89 7.85 180.40 1.42 11.30 16 4 N -0.51 -19.32 10.38 -195.55 -2.03 -21.35 16 5 C 0.16 5.71 10.84 85.03 0.92 6.63 16 6 C -0.12 -4.91 5.28 -19.86 -0.10 -5.01 16 7 C -0.14 -5.41 5.52 -19.93 -0.11 -5.52 16 8 C -0.05 -1.52 9.54 22.47 0.21 -1.30 16 9 C -0.19 -4.93 10.03 22.27 0.22 -4.71 16 10 C -0.06 -1.84 10.03 22.29 0.22 -1.62 16 11 C -0.25 -9.73 9.16 22.36 0.20 -9.53 16 12 C 0.13 5.91 6.58 22.81 0.15 6.06 16 13 O -0.21 -11.96 8.21 -21.75 -0.18 -12.14 16 14 C -0.41 -22.69 9.49 67.92 0.64 -22.05 16 15 H 0.10 5.14 5.21 -2.91 -0.02 5.13 16 16 C -0.02 -0.89 5.49 84.83 0.47 -0.43 16 17 N -0.91 -54.36 13.67 21.61 0.30 -54.07 16 18 Si 1.01 41.82 29.55 68.60 2.03 43.85 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 22 C 0.18 7.83 10.11 85.03 0.86 8.69 16 23 N -0.53 -22.34 9.10 -195.54 -1.78 -24.12 16 24 H 0.09 2.24 8.11 -2.40 -0.02 2.22 16 25 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 26 H 0.14 2.36 8.14 -2.40 -0.02 2.34 16 27 H 0.20 5.39 8.06 -2.92 -0.02 5.36 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.12 4.90 5.64 -2.91 -0.02 4.89 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.15 7.06 7.79 -2.91 -0.02 7.03 16 Total: -1.00 -69.66 308.20 4.38 -65.27 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 1.14 Total: 23.59 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 6.20 Total: -19.76 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.51 Total: -99.54 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.18 Total: -12.14 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.29 Total: -1.28 kcal Total: -69.66 4.38 -65.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241627793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.861 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds