Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99686 * 2 1 4 4 C 1.39350 * 119.57361 * 180.02562 * 3 2 1 5 5 C 1.37975 * 119.22339 * 179.70369 * 4 3 2 6 6 C 1.40081 * 118.40241 * 0.54090 * 5 4 3 7 7 C 1.48204 * 120.45337 * 179.73440 * 6 5 4 8 8 C 1.39484 * 119.66078 * 184.74197 * 7 6 5 9 9 C 1.38186 * 119.14675 * 179.97438 * 8 7 6 10 10 C 1.39444 * 118.46238 * 359.73716 * 9 8 7 11 11 O 1.35718 * 120.38155 * 180.26485 * 10 9 8 12 12 C 1.34813 * 117.00376 * 354.78231 * 11 10 9 13 13 H 1.08007 * 119.99590 * 5.07408 * 12 11 10 14 14 C 1.38635 * 120.00289 * 185.07936 * 12 11 10 15 15 N 1.31561 * 120.00331 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99588 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47491 * 90.00108 * 16 14 12 18 18 H 1.48507 * 109.46914 * 209.99320 * 16 14 12 19 19 H 1.48498 * 109.47439 * 329.98976 * 16 14 12 20 20 C 1.38933 * 119.23885 * 0.50543 * 10 9 8 21 21 N 1.31688 * 120.79156 * 359.48040 * 20 10 9 22 22 C 1.39260 * 119.09352 * 359.46009 * 6 5 4 23 23 N 1.31769 * 120.67897 * 0.27350 * 22 6 5 24 24 H 1.09002 * 109.47211 * 299.99226 * 1 2 3 25 25 H 1.08997 * 109.47311 * 60.00054 * 1 2 3 26 26 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.38407 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.79536 * 180.29889 * 5 4 3 29 29 H 1.08000 * 120.42274 * 0.02562 * 8 7 6 30 30 H 1.07994 * 120.76580 * 180.02562 * 9 8 7 31 31 H 0.96997 * 120.00416 * 180.02562 * 15 14 12 32 32 H 1.08000 * 119.60157 * 179.75299 * 20 10 9 33 33 H 1.08000 * 119.66109 * 180.30127 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5458 2.1145 -0.0005 5 6 3.8479 3.4607 -0.0068 6 6 2.7915 4.3807 -0.0007 7 6 3.0641 5.8375 -0.0011 8 6 2.0043 6.7380 0.1052 9 6 2.2706 8.0940 0.1043 10 6 3.5974 8.5106 0.0021 11 8 3.9037 9.8327 0.0028 12 6 2.8717 10.7002 -0.0036 13 1 1.8584 10.3344 0.0736 14 6 3.1110 12.0616 -0.1096 15 7 4.3453 12.5072 -0.2033 16 14 1.6809 13.2634 -0.1178 17 1 1.3744 13.6777 1.2748 18 1 2.0434 14.4585 -0.9213 19 1 0.4882 12.6095 -0.7138 20 6 4.6018 7.5567 -0.1056 21 7 4.3143 6.2716 -0.1017 22 6 1.4817 3.9077 -0.0001 23 7 1.2343 2.6135 0.0002 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3352 1.3774 -0.0005 28 1 4.8742 3.7971 -0.0122 29 1 0.9887 6.3801 0.1880 30 1 1.4700 8.8142 0.1857 31 1 4.5128 13.4597 -0.2771 32 1 5.6311 7.8730 -0.1891 33 1 0.6603 4.6089 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241633854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = 37.511537 kcal Electronic energy + Delta-G solvation = -18703.022079 eV Core-core repulsion = 15627.609564 eV Total energy + Delta-G solvation = -3075.412516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22339 -39.32184 -37.31243 -33.02210 -32.46458 -32.11568 -31.20677 -29.12459 -28.46675 -25.84284 -24.02203 -23.83096 -22.23129 -21.34966 -18.34747 -18.12126 -17.42085 -16.58602 -16.11532 -15.22260 -15.12707 -14.69379 -14.47710 -14.23721 -14.12583 -13.86024 -13.53101 -13.43498 -13.19475 -12.60198 -12.58823 -12.48783 -12.03384 -11.92840 -11.38821 -11.22551 -10.66820 -10.64311 -10.04380 -9.95368 -9.71726 -9.59772 -9.21806 -8.99616 -8.93665 -7.94948 -7.15141 -6.74290 -4.29645 0.72869 1.33658 1.41461 1.91126 2.16122 2.19075 2.97926 2.99002 3.04083 3.73358 3.76557 4.50746 4.51360 4.60511 4.85904 4.97231 5.01220 5.05113 5.05303 5.10059 5.19128 5.33872 5.61413 5.62379 5.74139 5.81311 5.88264 6.12823 6.32379 6.46099 6.58379 6.74227 6.85495 7.05056 7.29440 7.67804 7.77537 8.58093 8.69622 9.32250 10.41460 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042997 B = 0.002852 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.056363 B = 9815.524321 C =10447.589955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.095 6.095 3 C 0.099 3.901 4 C -0.145 4.145 5 C -0.045 4.045 6 C -0.049 4.049 7 C 0.035 3.965 8 C -0.096 4.096 9 C -0.202 4.202 10 C 0.109 3.891 11 O -0.154 6.154 12 C -0.393 4.393 13 H 0.096 0.904 14 C 0.043 3.957 15 N -0.847 5.847 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.265 1.265 20 C 0.037 3.963 21 N -0.430 5.430 22 C 0.107 3.893 23 N -0.486 5.486 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.276 0.724 32 H 0.155 0.845 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -16.485 0.403 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.143 5.857 3 C -0.149 4.149 4 C -0.170 4.170 5 C -0.073 4.073 6 C -0.054 4.054 7 C -0.099 4.099 8 C -0.116 4.116 9 C -0.228 4.228 10 C 0.050 3.950 11 O -0.054 6.054 12 C -0.469 4.469 13 H 0.114 0.886 14 C -0.164 4.164 15 N -0.479 5.479 16 Si 0.770 3.230 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.128 4.128 21 N -0.140 5.140 22 C -0.054 4.054 23 N -0.198 5.198 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.152 -18.034 0.314 18.758 hybrid contribution -1.430 2.768 0.086 3.117 sum -6.582 -15.266 0.400 16.629 Atomic orbital electron populations 1.23392 0.93779 1.05702 1.06672 1.85347 1.07839 1.00177 1.92386 1.22858 0.92242 0.97691 1.02139 1.21560 0.95421 0.96786 1.03264 1.21618 1.00519 0.91186 0.93974 1.19462 0.93883 0.92333 0.99722 1.18811 0.89309 0.91015 1.10775 1.21667 0.98858 0.93020 0.98038 1.21453 0.97116 0.95768 1.08440 1.20545 0.93628 0.86609 0.94206 1.83955 1.35344 1.10086 1.75987 1.21452 0.86723 0.86358 1.52391 0.88628 1.25404 0.98396 0.96796 0.95785 1.70027 1.19215 1.15730 1.42963 0.85628 0.79328 0.79132 0.78943 1.19545 1.19927 1.18916 1.21748 0.98736 0.86094 1.06200 1.67309 1.20905 1.16165 1.09597 1.22715 0.95401 0.91097 0.96220 1.67892 1.34661 1.02508 1.14692 0.89569 0.89568 0.88238 0.84561 0.83376 0.86008 0.84289 0.91406 0.82799 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 10.01 101.05 1.01 -0.10 16 2 S -0.10 -1.05 22.55 -107.50 -2.42 -3.48 16 3 C 0.10 1.35 7.00 -16.84 -0.12 1.24 16 4 C -0.14 -1.89 9.82 -39.26 -0.39 -2.28 16 5 C -0.05 -0.66 9.68 -38.99 -0.38 -1.04 16 6 C -0.05 -0.77 5.89 -104.73 -0.62 -1.39 16 7 C 0.04 0.64 6.73 -82.92 -0.56 0.08 16 8 C -0.10 -1.67 9.45 -39.14 -0.37 -2.04 16 9 C -0.20 -4.04 9.25 -39.15 -0.36 -4.40 16 10 C 0.11 2.44 6.67 -38.88 -0.26 2.18 16 11 O -0.15 -4.05 9.76 0.20 0.00 -4.05 16 12 C -0.39 -10.11 9.49 30.88 0.29 -9.81 16 13 H 0.10 2.24 5.25 -52.48 -0.28 1.96 16 14 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 15 N -0.85 -23.10 13.67 55.48 0.76 -22.34 16 16 Si 0.95 18.93 29.55 -169.99 -5.02 13.91 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C 0.04 0.76 11.14 -17.36 -0.19 0.57 16 21 N -0.43 -8.33 9.50 -9.62 -0.09 -8.43 16 22 C 0.11 1.55 10.58 -17.20 -0.18 1.36 16 23 N -0.49 -7.00 9.40 -11.79 -0.11 -7.11 16 24 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.15 2.07 7.63 -52.49 -0.40 1.67 16 29 H 0.12 1.69 6.23 -52.49 -0.33 1.37 16 30 H 0.14 2.68 5.75 -52.49 -0.30 2.37 16 31 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 33 H 0.16 1.95 6.21 -52.49 -0.33 1.63 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -28.70 306.88 -7.36 -36.05 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.88 Total: 5.44 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.21 Total: -14.63 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.56 Total: -37.87 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.00 Total: -4.05 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.42 Total: -3.48 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.70 -7.36 -36.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241633854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.566 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds