Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35927 * 116.99767 * 2 1 4 4 C 1.38401 * 119.99032 * 0.29997 * 3 2 1 5 5 C 1.39540 * 119.81019 * 180.27585 * 4 3 2 6 6 C 1.47958 * 120.10418 * 179.72248 * 5 4 3 7 7 C 1.39959 * 119.88133 * 179.72700 * 6 5 4 8 8 C 1.36245 * 120.12066 * 180.02562 * 7 6 5 9 9 C 1.40933 * 119.87800 * 359.97393 * 8 7 6 10 10 C 1.41023 * 120.11680 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00210 * 335.47006 * 10 9 8 12 12 C 1.40004 * 119.99654 * 155.19071 * 10 9 8 13 13 N 1.30799 * 120.00178 * 342.10416 * 12 10 9 14 14 Si 1.86801 * 119.99745 * 162.10969 * 12 10 9 15 15 H 1.48504 * 109.47275 * 60.00243 * 14 12 10 16 16 H 1.48504 * 109.46956 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47319 * 299.99943 * 14 12 10 18 18 C 1.40940 * 119.76741 * 0.25482 * 9 8 7 19 19 C 1.36237 * 119.87912 * 359.53025 * 18 9 8 20 20 C 1.39659 * 119.78646 * 359.44806 * 5 4 3 21 21 C 1.37926 * 119.97294 * 0.27258 * 20 5 4 22 22 C 1.38419 * 120.19342 * 359.97438 * 21 20 5 23 23 Cl 1.73601 * 119.89722 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47128 * 300.00263 * 1 2 3 25 25 H 1.09004 * 109.46729 * 60.00109 * 1 2 3 26 26 H 1.08993 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.09293 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.93623 * 359.97438 * 7 6 5 29 29 H 1.07996 * 120.06091 * 179.97438 * 8 7 6 30 30 H 0.97004 * 119.99949 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.06003 * 179.71918 * 18 9 8 32 32 H 1.08000 * 119.94660 * 180.20615 * 19 18 9 33 33 H 1.08001 * 120.00926 * 180.29976 * 20 5 4 34 34 H 1.08000 * 119.90289 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2921 2.3717 0.0063 5 6 1.9294 3.6131 0.0004 6 6 1.1296 4.8579 0.0009 7 6 1.7737 6.1004 0.0008 8 6 1.0421 7.2498 0.0017 9 6 -0.3658 7.1858 0.0022 10 6 -1.1280 8.3723 0.0038 11 1 -0.7039 9.2861 0.3928 12 6 -2.4326 8.3668 -0.5045 13 7 -2.8263 7.3939 -1.2850 14 14 -3.6108 9.7491 -0.0679 15 1 -3.0500 11.0430 -0.5331 16 1 -4.9193 9.5112 -0.7285 17 1 -3.7995 9.7921 1.4044 18 6 -1.0093 5.9319 0.0072 19 6 -0.2682 4.7887 0.0018 20 6 3.3245 3.6767 -0.0001 21 6 4.0673 2.5145 -0.0004 22 6 3.4341 1.2836 0.0002 23 17 4.3765 -0.1743 0.0004 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2136 2.3167 0.0116 28 1 2.8527 6.1482 0.0008 29 1 1.5401 8.2081 0.0021 30 1 -3.7300 7.3903 -1.6375 31 1 -2.0879 5.8774 0.0122 32 1 -0.7602 3.8273 0.0023 33 1 3.8215 4.6355 0.0003 34 1 5.1461 2.5650 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241734031.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = -21.401103 kcal Electronic energy + Delta-G solvation = -19171.287719 eV Core-core repulsion = 16058.984102 eV Total energy + Delta-G solvation = -3112.303617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17106 -39.61536 -38.23582 -37.26327 -35.67727 -33.04024 -31.81091 -30.90177 -30.35022 -28.26677 -26.84815 -23.92060 -23.82691 -21.99517 -21.75900 -19.39391 -19.04691 -17.38020 -17.31845 -17.04955 -16.73773 -16.28886 -15.70827 -15.29405 -14.90906 -14.58051 -14.44189 -14.26770 -13.97774 -13.74488 -13.40099 -13.00225 -12.90578 -12.76540 -12.65905 -12.42188 -12.32749 -12.00969 -11.92259 -11.76644 -11.54033 -11.19785 -11.07419 -10.09976 -9.51301 -9.40366 -8.82088 -8.65387 -6.36506 -0.11159 0.41845 1.08125 1.18757 1.27999 1.38258 1.49480 1.56060 2.16353 2.28796 2.53364 2.94354 3.75054 3.80006 3.88886 4.18165 4.25988 4.34757 4.35546 4.42112 4.51780 4.58046 4.70857 4.83390 4.96570 5.05107 5.14336 5.17813 5.29063 5.33473 5.57747 5.65979 5.70763 5.97257 6.04005 6.22100 6.27774 6.31426 6.59712 6.82141 6.94780 8.19984 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.003476 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.497906 B = 8052.403136 C = 8820.973281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.320 6.320 3 C 0.139 3.861 4 C -0.227 4.227 5 C 0.042 3.958 6 C -0.210 4.210 7 C -0.060 4.060 8 C -0.247 4.247 9 C 0.091 3.909 10 C -0.483 4.483 11 H 0.083 0.917 12 C 0.036 3.964 13 N -0.809 5.809 14 Si 0.985 3.015 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.195 4.195 19 C -0.078 4.078 20 C -0.169 4.169 21 C -0.057 4.057 22 C -0.111 4.111 23 Cl -0.067 7.067 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.293 0.707 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -9.128 1.834 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.234 6.234 3 C 0.093 3.907 4 C -0.246 4.246 5 C 0.042 3.958 6 C -0.212 4.212 7 C -0.078 4.078 8 C -0.266 4.266 9 C 0.088 3.912 10 C -0.511 4.511 11 H 0.102 0.898 12 C -0.181 4.181 13 N -0.433 5.433 14 Si 0.805 3.195 15 H -0.182 1.182 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.215 4.215 19 C -0.096 4.096 20 C -0.187 4.187 21 C -0.075 4.075 22 C -0.138 4.138 23 Cl -0.038 7.038 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.304 -9.546 1.672 11.048 hybrid contribution -0.962 0.634 -0.044 1.153 sum 4.342 -8.912 1.628 10.046 Atomic orbital electron populations 1.23339 0.76626 1.05671 1.01951 1.86088 1.23146 1.25733 1.88415 1.18652 0.90779 0.84980 0.96306 1.21294 1.00509 0.90954 1.11844 1.18880 0.93383 0.91730 0.91824 1.18326 0.92432 0.91750 1.18645 1.20742 0.98984 0.91551 0.96496 1.20916 0.93748 0.97544 1.14393 1.18099 0.92347 0.93678 0.87093 1.19979 0.98568 0.96855 1.35667 0.89846 1.26866 0.99929 0.99645 0.91700 1.69850 1.20011 1.32245 1.21221 0.85202 0.76636 0.77902 0.79779 1.18151 1.19067 1.18347 1.20952 0.99158 0.92351 1.09014 1.20730 0.93392 0.97231 0.98265 1.21268 0.92436 0.99001 1.06034 1.20983 1.01232 0.88837 0.96441 1.20243 0.88497 0.88834 1.16271 1.98313 1.71808 1.36298 1.97429 0.92227 0.92392 0.85476 0.84485 0.85537 0.87743 0.89597 0.87893 0.87433 0.83773 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.32 -9.11 9.94 -92.73 -0.92 -10.03 16 3 C 0.14 4.37 6.68 22.49 0.15 4.52 16 4 C -0.23 -7.62 8.41 22.62 0.19 -7.43 16 5 C 0.04 1.53 5.88 -20.04 -0.12 1.41 16 6 C -0.21 -8.87 5.90 -19.87 -0.12 -8.99 16 7 C -0.06 -2.50 9.36 22.22 0.21 -2.30 16 8 C -0.25 -11.54 9.73 22.47 0.22 -11.32 16 9 C 0.09 4.69 5.57 -21.27 -0.12 4.57 16 10 C -0.48 -24.68 9.03 23.38 0.21 -24.47 16 11 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 12 C 0.04 1.71 5.13 85.27 0.44 2.15 16 13 N -0.81 -40.06 10.98 21.84 0.24 -39.82 16 14 Si 0.98 35.70 29.60 68.60 2.03 37.73 16 15 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 16 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 17 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 18 C -0.20 -9.89 8.63 22.47 0.19 -9.70 16 19 C -0.08 -3.51 9.36 22.22 0.21 -3.30 16 20 C -0.17 -5.19 9.42 22.54 0.21 -4.98 16 21 C -0.06 -1.54 9.81 22.24 0.22 -1.32 16 22 C -0.11 -3.29 6.34 22.49 0.14 -3.15 16 23 Cl -0.07 -1.77 28.49 -2.72 -0.08 -1.85 16 24 H 0.06 1.22 7.64 -2.39 -0.02 1.20 16 25 H 0.06 1.21 7.67 -2.38 -0.02 1.20 16 26 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.14 4.37 4.41 -2.91 -0.01 4.36 16 28 H 0.13 4.37 6.17 -2.91 -0.02 4.35 16 29 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 31 H 0.10 5.41 6.19 -2.91 -0.02 5.39 16 32 H 0.11 4.30 6.17 -2.91 -0.02 4.28 16 33 H 0.14 3.92 6.18 -2.91 -0.02 3.91 16 34 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -56.92 304.27 5.56 -51.36 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 1.14 Total: 25.42 kcal Atomic # 6 Polarization: -65.96 SS G_CDS: 3.15 Total: -62.81 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.24 Total: -39.82 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.92 Total: -10.03 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -56.92 5.56 -51.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241734031.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.955 kcal (2) G-P(sol) polarization free energy of solvation -56.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds