Wall clock time and date at job start Tue Mar 31 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 117.00032 * 2 1 4 4 C 1.38491 * 120.00227 * 359.73429 * 3 2 1 5 5 C 1.39255 * 119.83688 * 179.72433 * 4 3 2 6 6 C 1.48413 * 120.08196 * 180.27143 * 5 4 3 7 7 C 1.39732 * 119.99904 * 359.97394 * 6 5 4 8 8 C 1.38388 * 120.37586 * 179.72082 * 7 6 5 9 9 C 1.37722 * 120.37887 * 0.56031 * 8 7 6 10 10 C 1.40756 * 119.99003 * 359.72089 * 9 8 7 11 11 C 1.41422 * 120.18418 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99883 * 150.18045 * 11 10 9 13 13 C 1.39930 * 120.00153 * 330.17289 * 11 10 9 14 14 N 1.30838 * 120.00023 * 161.73286 * 13 11 10 15 15 Si 1.86796 * 120.00132 * 341.73673 * 13 11 10 16 16 H 1.48504 * 109.47424 * 95.41294 * 15 13 11 17 17 H 1.48504 * 109.47409 * 215.40886 * 15 13 11 18 18 H 1.48496 * 109.47249 * 335.41391 * 15 13 11 19 19 C 1.38734 * 120.00032 * 180.25521 * 6 5 4 20 20 C 1.39357 * 119.83569 * 0.52035 * 5 4 3 21 21 C 1.38034 * 119.99725 * 359.75221 * 20 5 4 22 22 C 1.38339 * 120.16299 * 359.97438 * 21 20 5 23 23 Cl 1.73599 * 119.91479 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.46949 * 59.99701 * 1 2 3 25 25 H 1.08998 * 109.46464 * 299.99301 * 1 2 3 26 26 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.07867 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.81092 * 0.02562 * 7 6 5 29 29 H 1.07995 * 119.81298 * 180.25540 * 8 7 6 30 30 H 1.08004 * 120.00263 * 179.69795 * 9 8 7 31 31 H 0.96993 * 119.99702 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.18153 * 0.02562 * 19 6 5 33 33 H 1.07997 * 120.00262 * 179.77219 * 20 5 4 34 34 H 1.07996 * 119.91262 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3726 -0.0056 5 6 1.9277 3.6116 0.0003 6 6 1.1247 4.8597 0.0004 7 6 -0.2710 4.7926 -0.0058 8 6 -1.0273 5.9515 0.0001 9 6 -0.4131 7.1841 0.0006 10 6 0.9919 7.2700 0.0010 11 6 1.6269 8.5337 0.0021 12 1 2.5943 8.6514 0.4675 13 6 1.0020 9.6313 -0.6000 14 7 1.3873 10.8464 -0.3051 15 14 -0.3825 9.3620 -1.8247 16 1 -1.6887 9.4632 -1.1255 17 1 -0.3098 10.3948 -2.8893 18 1 -0.2500 8.0138 -2.4331 19 6 1.7599 6.0931 0.0009 20 6 3.3197 3.6765 0.0007 21 6 4.0648 2.5145 0.0005 22 6 3.4332 1.2838 0.0004 23 17 4.3765 -0.1735 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2133 2.3176 -0.0103 28 1 -0.7622 3.8308 -0.0103 29 1 -2.1055 5.8889 -0.0006 30 1 -1.0093 8.0846 0.0003 31 1 0.9538 11.6073 -0.7222 32 1 2.8385 6.1484 0.0007 33 1 3.8156 4.6359 0.0015 34 1 5.1435 2.5665 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241734555.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:59 Heat of formation + Delta-G solvation = -6.457581 kcal Electronic energy + Delta-G solvation = -19286.265699 eV Core-core repulsion = 16174.610082 eV Total energy + Delta-G solvation = -3111.655617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16374 -38.27113 -37.09827 -36.19853 -33.79313 -31.93600 -30.68280 -29.99210 -28.64377 -27.06385 -25.30904 -23.13565 -22.38433 -20.63575 -20.31463 -18.26482 -17.05303 -16.48816 -16.10504 -15.82404 -15.80077 -14.73217 -14.34152 -14.09553 -13.84740 -13.37705 -13.27216 -12.98766 -12.78571 -12.23973 -12.06540 -11.92634 -11.65875 -11.45468 -11.33478 -11.18357 -10.83188 -10.78138 -10.57809 -10.38791 -9.91490 -9.66776 -9.28963 -8.92065 -8.28491 -7.81449 -7.31020 -7.03116 -4.59070 1.01252 1.45953 2.29034 2.50191 2.60963 3.04284 3.15448 3.18600 3.25002 3.84268 3.91478 4.47602 4.81608 4.87039 5.08942 5.12697 5.25671 5.31796 5.35536 5.43356 5.54822 5.75865 5.92020 6.09676 6.15093 6.25267 6.40998 6.53255 6.57075 6.76386 6.87362 7.01968 7.26193 7.28613 7.45319 7.59433 7.73507 7.94968 8.24985 8.51464 8.69716 9.99176 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.003921 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.189633 B = 7139.929934 C = 7913.005666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.135 3.865 4 C -0.198 4.198 5 C 0.030 3.970 6 C -0.036 4.036 7 C -0.224 4.224 8 C -0.080 4.080 9 C -0.228 4.228 10 C 0.089 3.911 11 C -0.448 4.448 12 H 0.092 0.908 13 C 0.085 3.915 14 N -0.806 5.806 15 Si 0.910 3.090 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.244 1.244 19 C -0.180 4.180 20 C -0.142 4.142 21 C -0.071 4.071 22 C -0.083 4.083 23 Cl -0.073 7.073 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.286 0.714 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -15.223 -0.653 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.089 3.911 4 C -0.217 4.217 5 C 0.029 3.971 6 C -0.037 4.037 7 C -0.243 4.243 8 C -0.098 4.098 9 C -0.248 4.248 10 C 0.086 3.914 11 C -0.476 4.476 12 H 0.110 0.890 13 C -0.134 4.134 14 N -0.429 5.429 15 Si 0.736 3.264 16 H -0.196 1.196 17 H -0.217 1.217 18 H -0.167 1.167 19 C -0.199 4.199 20 C -0.160 4.160 21 C -0.090 4.090 22 C -0.111 4.111 23 Cl -0.044 7.044 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.157 0.843 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.262 -15.248 -0.660 15.265 hybrid contribution -0.837 0.167 -0.485 0.981 sum -1.098 -15.081 -1.145 15.164 Atomic orbital electron populations 1.23085 0.78303 1.03813 1.01739 1.86114 1.21370 1.26126 1.88655 1.18543 0.90363 0.84898 0.97261 1.21304 1.00413 0.90826 1.09114 1.18991 0.92866 0.92551 0.92671 1.18365 0.92703 0.90704 1.01880 1.20389 0.92422 0.96623 1.14906 1.20537 0.97686 0.92828 0.98788 1.21150 0.95006 0.96168 1.12432 1.17659 0.91265 0.93146 0.89286 1.19487 1.05743 0.90684 1.31683 0.89006 1.26146 0.96801 0.94227 0.96274 1.69695 1.38312 0.99494 1.35449 0.86327 0.80295 0.79786 0.79949 1.19615 1.21704 1.16729 1.21172 0.98345 0.90943 1.09457 1.21254 0.93181 0.98358 1.03221 1.20806 1.00288 0.89635 0.98265 1.20088 0.88467 0.88247 1.14255 1.98328 1.72086 1.36651 1.97333 0.92449 0.92429 0.88257 0.84322 0.88652 0.88519 0.88052 0.90351 0.87432 0.84274 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.16 9.95 -19.51 -0.19 -4.36 16 3 C 0.14 2.01 6.68 -39.25 -0.26 1.75 16 4 C -0.20 -3.05 8.41 -39.11 -0.33 -3.38 16 5 C 0.03 0.51 5.87 -104.91 -0.62 -0.11 16 6 C -0.04 -0.73 5.87 -104.96 -0.62 -1.35 16 7 C -0.22 -4.38 9.44 -38.97 -0.37 -4.75 16 8 C -0.08 -1.64 10.01 -39.71 -0.40 -2.04 16 9 C -0.23 -5.27 7.17 -38.82 -0.28 -5.55 16 10 C 0.09 2.17 5.10 -106.87 -0.55 1.62 16 11 C -0.45 -11.66 9.57 -37.74 -0.36 -12.02 16 12 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 13 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 14 N -0.81 -20.89 13.93 55.55 0.77 -20.12 16 15 Si 0.91 20.14 24.52 -169.99 -4.17 15.97 16 16 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.24 -5.54 6.86 56.52 0.39 -5.16 16 19 C -0.18 -3.96 9.17 -38.53 -0.35 -4.32 16 20 C -0.14 -2.22 9.42 -39.24 -0.37 -2.59 16 21 C -0.07 -0.99 9.81 -39.62 -0.39 -1.38 16 22 C -0.08 -1.22 6.33 -39.30 -0.25 -1.47 16 23 Cl -0.07 -0.96 28.49 -51.86 -1.48 -2.44 16 24 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 25 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.14 1.92 4.42 -52.48 -0.23 1.69 16 28 H 0.10 1.59 6.18 -52.49 -0.32 1.26 16 29 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 2.34 4.72 -52.48 -0.25 2.09 16 31 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.11 2.20 6.19 -52.49 -0.32 1.87 16 33 H 0.14 2.08 6.19 -52.49 -0.32 1.76 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -27.12 299.24 -7.90 -35.02 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.11 Total: 3.69 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -4.24 Total: -32.27 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.77 Total: -20.12 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.17 Total: 15.97 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.12 -7.90 -35.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241734555.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.561 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds