Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47192 * 270.00328 * 3 2 1 5 5 H 1.48500 * 109.47036 * 30.00390 * 3 2 1 6 6 H 1.48499 * 109.47124 * 150.00345 * 3 2 1 7 7 C 1.39894 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00629 * 163.00468 * 7 2 1 9 9 C 1.41385 * 119.99972 * 343.00804 * 7 2 1 10 10 C 1.40793 * 120.57368 * 155.77682 * 9 7 2 11 11 N 1.31507 * 120.69560 * 179.70523 * 10 9 7 12 12 C 1.32163 * 122.07037 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.45200 * 179.97438 * 12 11 10 14 14 C 1.40051 * 121.08663 * 359.97438 * 12 11 10 15 15 C 1.48401 * 120.41693 * 180.02562 * 14 12 11 16 16 C 1.39455 * 120.47104 * 129.99692 * 15 14 12 17 17 N 1.31781 * 120.92627 * 179.97438 * 16 15 14 18 18 C 1.31721 * 122.02330 * 0.02562 * 17 16 15 19 19 C 1.39636 * 120.82282 * 0.02562 * 18 17 16 20 20 C 1.47733 * 120.50612 * 180.02562 * 19 18 17 21 21 O 1.21466 * 120.00442 * 180.02562 * 20 19 18 22 22 O 1.34711 * 119.99840 * 359.97438 * 20 19 18 23 23 C 1.39470 * 120.46678 * 309.71543 * 15 14 12 24 24 C 1.38994 * 119.16567 * 0.02562 * 14 12 11 25 25 H 0.96995 * 120.00420 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.65633 * 359.72497 * 10 9 7 27 27 H 1.08000 * 119.53793 * 359.97438 * 16 15 14 28 28 H 1.07993 * 119.58748 * 180.02562 * 18 17 16 29 29 H 0.96707 * 116.99919 * 180.02562 * 22 20 19 30 30 H 1.08001 * 120.91269 * 359.97438 * 23 15 14 31 31 H 1.08000 * 120.94060 * 180.02562 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4400 2.6526 0.7001 6 1 3.5402 1.4402 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0528 -1.2318 -0.2739 9 6 1.3476 -2.4094 0.3567 10 6 1.8236 -3.6533 -0.0997 11 7 1.2145 -4.7694 0.2358 12 6 0.1408 -4.7785 1.0064 13 9 -0.4434 -5.9562 1.3178 14 6 -0.4013 -3.5875 1.5055 15 6 -1.6071 -3.6151 2.3700 16 6 -1.6239 -2.9264 3.5825 17 7 -2.6900 -2.9443 4.3570 18 6 -3.7805 -3.6063 4.0290 19 6 -3.8493 -4.3240 2.8331 20 6 -5.0761 -5.0635 2.4719 21 8 -5.1259 -5.6852 1.4296 22 8 -6.1393 -5.0493 3.2991 23 6 -2.7418 -4.3254 1.9787 24 6 0.2044 -2.3793 1.1809 25 1 -0.4850 0.8400 0.0004 26 1 2.6984 -3.6913 -0.7319 27 1 -0.7509 -2.3705 3.8912 28 1 -4.6319 -3.5939 4.6932 29 1 -6.9193 -5.5483 3.0201 30 1 -2.7632 -4.8652 1.0435 31 1 -0.1893 -1.4439 1.5503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241802473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -79.080435 kcal Electronic energy + Delta-G solvation = -21475.181589 eV Core-core repulsion = 17828.500090 eV Total energy + Delta-G solvation = -3646.681499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.71717 -40.63423 -39.42709 -38.29211 -36.18393 -34.32937 -33.34531 -32.24606 -30.54861 -28.98059 -25.73781 -25.17957 -23.74502 -22.50519 -21.53628 -20.77325 -18.36020 -17.73457 -17.15324 -16.72586 -16.54698 -16.23845 -15.75055 -15.62703 -15.22852 -14.73312 -14.35350 -13.61996 -13.56247 -13.30600 -13.01861 -12.66542 -12.47260 -12.27237 -11.92003 -11.90397 -11.69104 -11.49053 -11.33159 -10.90033 -10.80013 -10.35804 -9.88044 -9.61771 -9.55995 -9.33667 -8.56208 -8.28533 -7.71721 -7.14598 -4.75691 0.56876 1.20518 2.19408 2.49265 2.59532 2.88461 2.89446 2.90595 2.96932 3.66074 3.89601 4.23909 4.45486 4.75657 4.88970 4.96635 5.10230 5.14678 5.22321 5.52741 5.68520 5.95462 6.08079 6.23854 6.35086 6.35795 6.57892 6.65222 6.78940 6.81125 7.25932 7.45412 7.60216 7.76886 7.94464 8.07010 8.31985 8.35457 9.07717 9.77282 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.004855 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.554994 B = 5765.806127 C = 6616.644777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.436 4.436 8 H 0.090 0.910 9 C 0.055 3.945 10 C 0.016 3.984 11 N -0.486 5.486 12 C 0.164 3.836 13 F -0.145 7.145 14 C -0.105 4.105 15 C -0.069 4.069 16 C 0.145 3.855 17 N -0.490 5.490 18 C 0.145 3.855 19 C -0.185 4.185 20 C 0.535 3.465 21 O -0.510 6.510 22 O -0.512 6.512 23 C 0.003 3.997 24 C -0.094 4.094 25 H 0.289 0.711 26 H 0.141 0.859 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.414 0.586 30 H 0.148 0.852 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -0.641 5.919 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.465 4.465 8 H 0.108 0.892 9 C 0.051 3.949 10 C -0.146 4.146 11 N -0.197 5.197 12 C 0.010 3.990 13 F -0.124 7.124 14 C -0.109 4.109 15 C -0.071 4.071 16 C -0.011 4.011 17 N -0.198 5.198 18 C -0.014 4.014 19 C -0.188 4.188 20 C 0.379 3.621 21 O -0.398 6.398 22 O -0.324 6.324 23 C -0.022 4.022 24 C -0.119 4.119 25 H 0.100 0.900 26 H 0.158 0.842 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.272 0.728 30 H 0.166 0.834 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.248 -0.800 6.255 8.877 hybrid contribution -0.710 0.494 -0.834 1.201 sum -6.958 -0.306 5.421 8.826 Atomic orbital electron populations 1.69755 1.07821 1.30391 1.32664 1.26043 0.94865 1.02016 0.91823 0.86152 0.80616 0.79610 0.79664 1.19090 1.19764 1.18026 1.19598 0.98188 0.90412 1.38312 0.89160 1.18475 0.92118 0.93917 0.90439 1.22362 1.02004 0.86470 1.03747 1.66311 1.07589 1.33776 1.12043 1.17477 0.96031 0.79545 1.05898 1.91419 1.82653 1.46589 1.91785 1.18895 0.96123 0.93955 1.01966 1.19720 0.94024 0.97726 0.95670 1.23265 0.95894 0.93124 0.88795 1.67746 1.00028 1.18860 1.33172 1.23098 0.95917 0.89594 0.92744 1.19936 0.93471 1.05776 0.99628 1.20657 0.82855 0.77872 0.80733 1.90909 1.82672 1.41314 1.24932 1.84542 1.25723 1.70731 1.51439 1.21847 0.89557 0.92681 0.98113 1.21716 0.97205 0.95182 0.97829 0.89998 0.84166 0.81683 0.81549 0.72757 0.83412 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.75 10.94 55.54 0.61 -17.14 16 2 C 0.07 1.58 5.18 -17.35 -0.09 1.49 16 3 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 4 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 7 C -0.44 -9.94 9.08 -37.77 -0.34 -10.28 16 8 H 0.09 1.93 7.90 -52.49 -0.41 1.51 16 9 C 0.06 1.30 5.58 -106.70 -0.60 0.70 16 10 C 0.02 0.36 10.96 -16.73 -0.18 0.18 16 11 N -0.49 -11.67 10.34 -12.59 -0.13 -11.80 16 12 C 0.16 3.84 8.32 -16.73 -0.14 3.70 16 13 F -0.14 -3.28 15.98 2.25 0.04 -3.24 16 14 C -0.10 -2.29 5.50 -104.75 -0.58 -2.86 16 15 C -0.07 -1.30 5.32 -104.80 -0.56 -1.86 16 16 C 0.15 2.45 10.70 -17.12 -0.18 2.27 16 17 N -0.49 -7.78 10.33 -12.63 -0.13 -7.91 16 18 C 0.15 2.05 10.78 -17.08 -0.18 1.87 16 19 C -0.18 -2.85 5.89 -104.88 -0.62 -3.46 16 20 C 0.54 7.52 8.28 34.61 0.29 7.81 16 21 O -0.51 -8.69 17.20 -19.24 -0.33 -9.02 16 22 O -0.51 -4.96 12.70 -40.52 -0.51 -5.47 16 23 C 0.00 0.06 8.56 -38.51 -0.33 -0.27 16 24 C -0.09 -2.15 8.30 -38.27 -0.32 -2.46 16 25 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 26 H 0.14 2.89 8.06 -52.49 -0.42 2.46 16 27 H 0.17 2.55 8.05 -52.49 -0.42 2.13 16 28 H 0.17 1.83 7.61 -52.49 -0.40 1.43 16 29 H 0.41 2.03 9.11 45.56 0.42 2.45 16 30 H 0.15 2.80 7.55 -52.49 -0.40 2.40 16 31 H 0.14 3.20 6.22 -52.49 -0.33 2.87 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -28.05 293.64 -6.00 -34.05 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -1.10 Total: 8.04 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.83 Total: -3.18 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.35 Total: -36.85 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.85 Total: -14.49 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.05 -6.00 -34.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241802473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.032 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds