Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47192 * 270.00328 * 3 2 1 5 5 H 1.48500 * 109.47036 * 30.00390 * 3 2 1 6 6 H 1.48499 * 109.47124 * 150.00345 * 3 2 1 7 7 C 1.39894 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00629 * 163.00468 * 7 2 1 9 9 C 1.41385 * 119.99972 * 343.00804 * 7 2 1 10 10 C 1.40793 * 120.57368 * 155.77682 * 9 7 2 11 11 N 1.31507 * 120.69560 * 179.70523 * 10 9 7 12 12 C 1.32163 * 122.07037 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.45200 * 179.97438 * 12 11 10 14 14 C 1.40051 * 121.08663 * 359.97438 * 12 11 10 15 15 C 1.48401 * 120.41693 * 180.02562 * 14 12 11 16 16 C 1.39455 * 120.47104 * 129.99692 * 15 14 12 17 17 N 1.31781 * 120.92627 * 179.97438 * 16 15 14 18 18 C 1.31721 * 122.02330 * 0.02562 * 17 16 15 19 19 C 1.39636 * 120.82282 * 0.02562 * 18 17 16 20 20 C 1.47733 * 120.50612 * 180.02562 * 19 18 17 21 21 O 1.21466 * 120.00442 * 180.02562 * 20 19 18 22 22 O 1.34711 * 119.99840 * 359.97438 * 20 19 18 23 23 C 1.39470 * 120.46678 * 309.71543 * 15 14 12 24 24 C 1.38994 * 119.16567 * 0.02562 * 14 12 11 25 25 H 0.96995 * 120.00420 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.65633 * 359.72497 * 10 9 7 27 27 H 1.08000 * 119.53793 * 359.97438 * 16 15 14 28 28 H 1.07993 * 119.58748 * 180.02562 * 18 17 16 29 29 H 0.96707 * 116.99919 * 180.02562 * 22 20 19 30 30 H 1.08001 * 120.91269 * 359.97438 * 23 15 14 31 31 H 1.08000 * 120.94060 * 180.02562 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4400 2.6526 0.7001 6 1 3.5402 1.4402 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0528 -1.2318 -0.2739 9 6 1.3476 -2.4094 0.3567 10 6 1.8236 -3.6533 -0.0997 11 7 1.2145 -4.7694 0.2358 12 6 0.1408 -4.7785 1.0064 13 9 -0.4434 -5.9562 1.3178 14 6 -0.4013 -3.5875 1.5055 15 6 -1.6071 -3.6151 2.3700 16 6 -1.6239 -2.9264 3.5825 17 7 -2.6900 -2.9443 4.3570 18 6 -3.7805 -3.6063 4.0290 19 6 -3.8493 -4.3240 2.8331 20 6 -5.0761 -5.0635 2.4719 21 8 -5.1259 -5.6852 1.4296 22 8 -6.1393 -5.0493 3.2991 23 6 -2.7418 -4.3254 1.9787 24 6 0.2044 -2.3793 1.1809 25 1 -0.4850 0.8400 0.0004 26 1 2.6984 -3.6913 -0.7319 27 1 -0.7509 -2.3705 3.8912 28 1 -4.6319 -3.5939 4.6932 29 1 -6.9193 -5.5483 3.0201 30 1 -2.7632 -4.8652 1.0435 31 1 -0.1893 -1.4439 1.5503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241802473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -96.582903 kcal Electronic energy + Delta-G solvation = -21475.940553 eV Core-core repulsion = 17828.500090 eV Total energy + Delta-G solvation = -3647.440463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.49995 -41.84399 -40.69029 -39.93599 -37.18666 -36.04906 -34.84077 -33.54733 -32.28632 -30.53369 -27.45711 -26.45424 -25.18279 -24.07992 -23.09701 -22.12274 -19.66748 -19.08934 -18.63462 -18.37060 -17.89156 -17.73106 -17.11435 -16.84411 -16.78740 -16.47726 -15.78275 -15.10390 -14.89052 -14.55390 -14.38228 -14.25239 -14.09490 -13.90193 -13.68015 -13.38794 -13.12888 -12.84579 -12.68058 -12.35906 -12.09179 -11.88352 -11.30228 -11.24496 -10.92531 -10.72879 -10.29876 -9.96612 -9.41158 -8.81819 -6.52990 -0.68711 -0.21061 0.55364 0.79321 1.38145 1.43773 1.49828 1.59370 1.86271 2.17298 2.51088 2.64702 3.16681 3.27103 3.42124 3.46351 3.64264 3.70497 4.01498 4.10370 4.21048 4.52157 4.59918 4.77792 4.80951 4.97889 5.07208 5.14406 5.34926 5.46416 5.50945 5.68996 5.85422 6.31392 6.56360 6.61688 6.64856 6.88970 7.28551 8.12634 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.004855 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.554994 B = 5765.806127 C = 6616.644777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.453 4.453 8 H 0.100 0.900 9 C 0.037 3.963 10 C 0.001 3.999 11 N -0.501 5.501 12 C 0.134 3.866 13 F -0.146 7.146 14 C -0.092 4.092 15 C -0.095 4.095 16 C 0.152 3.848 17 N -0.493 5.493 18 C 0.165 3.835 19 C -0.187 4.187 20 C 0.547 3.453 21 O -0.546 6.546 22 O -0.491 6.491 23 C -0.006 4.006 24 C -0.109 4.109 25 H 0.298 0.702 26 H 0.158 0.842 27 H 0.175 0.825 28 H 0.208 0.792 29 H 0.438 0.562 30 H 0.129 0.871 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 0.818 7.266 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.118 0.882 9 C 0.032 3.968 10 C -0.161 4.161 11 N -0.213 5.213 12 C -0.019 4.019 13 F -0.126 7.126 14 C -0.096 4.096 15 C -0.098 4.098 16 C -0.004 4.004 17 N -0.201 5.201 18 C 0.007 3.993 19 C -0.190 4.190 20 C 0.392 3.608 21 O -0.437 6.437 22 O -0.305 6.305 23 C -0.032 4.032 24 C -0.134 4.134 25 H 0.109 0.891 26 H 0.175 0.825 27 H 0.192 0.808 28 H 0.225 0.775 29 H 0.301 0.699 30 H 0.147 0.853 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.332 0.632 7.622 10.595 hybrid contribution -0.528 0.044 -1.209 1.319 sum -7.859 0.676 6.414 10.167 Atomic orbital electron populations 1.69798 1.09262 1.31838 1.32250 1.26880 0.95454 1.04929 0.90674 0.85072 0.79268 0.75116 0.79696 1.18715 1.19148 1.17561 1.19954 0.98814 0.90905 1.38455 0.88155 1.18798 0.92657 0.94558 0.90791 1.22637 1.02746 0.86247 1.04434 1.66272 1.08121 1.34429 1.12516 1.17720 0.96722 0.80125 1.07304 1.91394 1.82705 1.46645 1.91895 1.19011 0.96487 0.92953 1.01136 1.19620 0.93509 1.00070 0.96621 1.23356 0.96699 0.92357 0.88009 1.67866 1.00184 1.19290 1.32716 1.23724 0.96169 0.87208 0.92193 1.20048 0.93437 1.05961 0.99543 1.20330 0.83247 0.76894 0.80365 1.90911 1.83376 1.42840 1.26606 1.84470 1.25606 1.70616 1.49821 1.21750 0.90572 0.92695 0.98157 1.21710 0.97753 0.95350 0.98593 0.89121 0.82481 0.80776 0.77506 0.69866 0.85316 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.44 10.94 21.82 0.24 -36.20 16 2 C 0.04 1.67 5.18 85.24 0.44 2.11 16 3 Si 0.99 32.19 29.59 68.60 2.03 34.22 16 4 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 5 H -0.27 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.25 -8.00 7.11 99.48 0.71 -7.29 16 7 C -0.45 -20.67 9.08 23.45 0.21 -20.45 16 8 H 0.10 4.24 7.90 -2.91 -0.02 4.22 16 9 C 0.04 1.77 5.58 -21.21 -0.12 1.65 16 10 C 0.00 0.06 10.96 85.37 0.94 1.00 16 11 N -0.50 -24.93 10.34 -193.74 -2.00 -26.94 16 12 C 0.13 6.52 8.32 85.08 0.71 7.23 16 13 F -0.15 -6.91 15.98 44.97 0.72 -6.19 16 14 C -0.09 -4.12 5.50 -19.95 -0.11 -4.23 16 15 C -0.10 -3.66 5.32 -19.98 -0.11 -3.77 16 16 C 0.15 5.02 10.70 84.99 0.91 5.93 16 17 N -0.49 -14.55 10.33 -193.87 -2.00 -16.55 16 18 C 0.17 4.17 10.78 85.05 0.92 5.09 16 19 C -0.19 -5.47 5.89 -20.03 -0.12 -5.59 16 20 C 0.55 14.30 8.28 70.33 0.58 14.89 16 21 O -0.55 -18.26 17.20 19.95 0.34 -17.91 16 22 O -0.49 -7.67 12.70 -56.21 -0.71 -8.38 16 23 C -0.01 -0.22 8.56 22.97 0.20 -0.03 16 24 C -0.11 -5.10 8.30 23.12 0.19 -4.91 16 25 H 0.30 12.08 8.30 -92.71 -0.77 11.31 16 26 H 0.16 6.61 8.06 -2.91 -0.02 6.58 16 27 H 0.18 5.32 8.05 -2.91 -0.02 5.30 16 28 H 0.21 3.51 7.61 -2.91 -0.02 3.49 16 29 H 0.44 2.61 9.11 -74.05 -0.67 1.93 16 30 H 0.13 5.13 7.55 -2.91 -0.02 5.11 16 31 H 0.14 6.42 6.22 -2.91 -0.02 6.40 16 Total: -1.00 -61.18 293.64 3.80 -57.38 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.54 Total: 21.67 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.64 Total: -1.09 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.77 Total: -79.69 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.37 Total: -26.30 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.72 Total: -6.19 kcal Atomic # 14 Polarization: 32.19 SS G_CDS: 2.03 Total: 34.22 kcal Total: -61.18 3.80 -57.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241802473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.204 kcal (2) G-P(sol) polarization free energy of solvation -61.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds