Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35925 * 117.00248 * 2 1 4 4 C 1.38833 * 119.98919 * 359.97438 * 3 2 1 5 5 C 1.38315 * 120.25419 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.22798 * 359.73631 * 5 4 3 7 7 C 1.39624 * 119.97296 * 0.53898 * 6 5 4 8 8 C 1.47960 * 120.12729 * 179.74120 * 7 6 5 9 9 C 1.39954 * 119.88658 * 129.97022 * 8 7 6 10 10 C 1.36244 * 120.12477 * 180.29833 * 9 8 7 11 11 C 1.40934 * 119.87586 * 359.47610 * 10 9 8 12 12 C 1.41024 * 120.11720 * 180.26964 * 11 10 9 13 13 H 1.08003 * 119.99571 * 24.67550 * 12 11 10 14 14 C 1.39999 * 120.00242 * 204.66780 * 12 11 10 15 15 N 1.30805 * 120.00151 * 17.96171 * 14 12 11 16 16 Si 1.86797 * 120.00208 * 197.95492 * 14 12 11 17 17 H 1.48495 * 109.47027 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47139 * 120.00256 * 16 14 12 19 19 H 1.48500 * 109.47188 * 240.00290 * 16 14 12 20 20 C 1.40939 * 119.76756 * 0.25527 * 11 10 9 21 21 C 1.36243 * 119.87913 * 0.02562 * 20 11 10 22 22 C 1.38549 * 119.98782 * 179.97438 * 3 2 1 23 23 Cl 1.73593 * 120.11269 * 0.02865 * 22 3 2 24 24 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46986 * 299.99757 * 1 2 3 26 26 H 1.09006 * 109.46673 * 59.99993 * 1 2 3 27 27 H 1.07999 * 119.86932 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.88340 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.01624 * 180.26051 * 6 5 4 30 30 H 1.08006 * 119.93616 * 0.05047 * 9 8 7 31 31 H 1.08000 * 120.06347 * 179.74947 * 10 9 8 32 32 H 0.97002 * 120.00363 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.06020 * 180.02562 * 20 11 10 34 34 H 1.07998 * 119.94583 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2899 2.3753 -0.0005 5 6 1.9122 3.6106 0.0000 6 6 3.2891 3.6946 0.0065 7 6 4.0591 2.5298 0.0013 8 6 5.5362 2.6160 0.0025 9 6 6.2772 1.8739 0.9293 10 6 7.6373 1.9542 0.9387 11 6 8.2983 2.7781 0.0056 12 6 9.7061 2.8606 0.0072 13 1 10.2942 2.0481 0.4077 14 6 10.3414 3.9956 -0.5107 15 7 9.6692 5.1066 -0.6684 16 14 12.1489 3.9236 -0.9764 17 1 12.6764 2.5625 -0.7039 18 1 12.3007 4.2328 -2.4209 19 1 12.9066 4.9182 -0.1751 20 6 7.5475 3.5189 -0.9291 21 6 6.1876 3.4357 -0.9261 22 6 3.4298 1.2832 0.0005 23 17 4.3777 -0.1710 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 0.2115 2.3162 -0.0005 28 1 1.3180 4.5124 0.0000 29 1 3.7715 4.6609 0.0112 30 1 5.7698 1.2394 1.6409 31 1 8.2080 1.3842 1.6569 32 1 10.1092 5.8930 -1.0275 33 1 8.0493 4.1514 -1.6465 34 1 5.6113 4.0026 -1.6422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241857061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -19.638425 kcal Electronic energy + Delta-G solvation = -19344.893200 eV Core-core repulsion = 16232.666019 eV Total energy + Delta-G solvation = -3112.227182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10320 -39.62057 -38.16309 -37.16651 -35.65108 -32.93254 -31.60056 -31.10446 -30.24678 -28.13661 -26.89202 -23.82392 -23.47403 -22.46789 -21.62944 -19.29482 -18.98212 -17.35765 -17.25047 -17.00344 -16.68778 -16.25363 -15.72670 -15.31614 -15.03458 -14.71735 -14.47738 -14.06373 -13.88728 -13.70043 -13.29744 -12.99151 -12.86282 -12.69498 -12.50297 -12.38913 -12.20639 -11.98931 -11.97380 -11.78913 -11.32644 -11.23914 -11.07095 -9.88435 -9.44177 -9.17489 -8.95837 -8.69190 -6.34747 0.08431 0.37878 1.00321 1.21573 1.38567 1.39514 1.51174 1.54243 2.19295 2.32207 2.60950 2.82389 3.72838 3.87020 3.99288 4.22746 4.31550 4.43736 4.44016 4.45067 4.47489 4.59756 4.76830 4.81075 5.01201 5.10847 5.15483 5.27873 5.37965 5.41942 5.56898 5.68959 5.70771 6.02229 6.08032 6.19588 6.33336 6.38976 6.64854 6.88446 6.99805 8.26529 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.003952 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.968757 B = 7083.304951 C = 7678.818824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.131 3.869 4 C -0.210 4.210 5 C -0.062 4.062 6 C -0.161 4.161 7 C 0.029 3.971 8 C -0.199 4.199 9 C -0.051 4.051 10 C -0.248 4.248 11 C 0.092 3.908 12 C -0.490 4.490 13 H 0.077 0.923 14 C 0.037 3.963 15 N -0.813 5.813 16 Si 0.984 3.016 17 H -0.259 1.259 18 H -0.262 1.262 19 H -0.263 1.263 20 C -0.193 4.193 21 C -0.074 4.074 22 C -0.100 4.100 23 Cl -0.073 7.073 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.292 0.708 33 H 0.105 0.895 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 -2.767 -0.275 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.085 3.915 4 C -0.229 4.229 5 C -0.080 4.080 6 C -0.180 4.180 7 C 0.028 3.972 8 C -0.201 4.201 9 C -0.069 4.069 10 C -0.268 4.268 11 C 0.089 3.911 12 C -0.519 4.519 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.438 5.438 16 Si 0.804 3.196 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.188 1.188 20 C -0.212 4.212 21 C -0.092 4.092 22 C -0.128 4.128 23 Cl -0.044 7.044 24 H 0.135 0.865 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.183 0.817 29 H 0.148 0.852 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.708 -2.852 -0.335 15.969 hybrid contribution 1.010 -0.019 -0.092 1.014 sum -14.699 -2.871 -0.427 14.983 Atomic orbital electron populations 1.23411 0.75971 1.05667 1.02670 1.86135 1.23839 1.25923 1.88414 1.18708 0.89671 0.86274 0.96849 1.21489 1.01302 0.90613 1.09454 1.21291 0.93463 0.98487 0.94752 1.21365 0.94443 0.97153 1.05015 1.18692 0.92752 0.91044 0.94705 1.18148 0.90336 1.07459 1.04119 1.20482 0.93398 0.96120 0.96913 1.20814 0.94314 1.08634 1.02996 1.18014 0.93993 0.89897 0.89147 1.19910 0.92307 1.03232 1.36416 0.90485 1.26813 1.05517 0.93569 0.92081 1.69861 1.40660 1.01523 1.31712 0.85135 0.75823 0.79671 0.78971 1.18275 1.18692 1.18789 1.20919 0.93255 1.05408 1.01644 1.20604 0.94178 0.97009 0.97414 1.20526 0.89316 0.87934 1.14994 1.98318 1.72648 1.36242 1.97211 0.86471 0.91159 0.91196 0.81441 0.81744 0.85160 0.87889 0.88586 0.89759 0.87742 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.70 9.95 -92.71 -0.92 -9.62 16 3 C 0.13 3.87 6.67 22.49 0.15 4.02 16 4 C -0.21 -4.76 9.04 22.43 0.20 -4.55 16 5 C -0.06 -1.45 10.03 22.22 0.22 -1.23 16 6 C -0.16 -5.08 9.51 22.54 0.21 -4.86 16 7 C 0.03 1.11 5.47 -20.03 -0.11 1.00 16 8 C -0.20 -9.03 5.14 -19.87 -0.10 -9.13 16 9 C -0.05 -2.40 8.10 22.22 0.18 -2.22 16 10 C -0.25 -12.76 9.73 22.47 0.22 -12.54 16 11 C 0.09 5.07 5.57 -21.27 -0.12 4.95 16 12 C -0.49 -26.63 9.03 23.38 0.21 -26.42 16 13 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 14 C 0.04 1.84 5.13 85.27 0.44 2.27 16 15 N -0.81 -41.86 10.96 21.84 0.24 -41.62 16 16 Si 0.98 37.78 29.60 68.60 2.03 39.81 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 C -0.19 -10.28 8.63 22.47 0.19 -10.09 16 21 C -0.07 -3.51 9.44 22.22 0.21 -3.30 16 22 C -0.10 -3.65 6.29 22.68 0.14 -3.50 16 23 Cl -0.07 -2.77 25.49 -2.72 -0.07 -2.84 16 24 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 26 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 27 H 0.17 2.41 6.28 -2.91 -0.02 2.39 16 28 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.13 4.01 8.04 -2.91 -0.02 3.99 16 30 H 0.10 4.52 7.11 -2.91 -0.02 4.50 16 31 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 33 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 34 H 0.11 4.58 8.04 -2.91 -0.02 4.55 16 Total: -1.00 -63.30 306.31 5.57 -57.73 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.12 Total: 20.80 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 3.17 Total: -64.26 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.92 Total: -9.62 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.07 Total: -2.84 kcal Total: -63.30 5.57 -57.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241857061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.092 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds