Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35932 * 116.99763 * 2 1 4 4 C 1.38837 * 119.99257 * 0.25495 * 3 2 1 5 5 C 1.38322 * 120.26486 * 180.29896 * 4 3 2 6 6 C 1.37945 * 120.23492 * 359.72174 * 5 4 3 7 7 C 1.39676 * 119.96605 * 0.02562 * 6 5 4 8 8 C 1.47851 * 120.12848 * 179.97438 * 7 6 5 9 9 C 1.39173 * 120.33876 * 64.74733 * 8 7 6 10 10 C 1.38075 * 119.98027 * 179.69688 * 9 8 7 11 11 C 1.38931 * 120.67526 * 0.60308 * 10 9 8 12 12 C 1.36429 * 120.69087 * 359.67557 * 11 10 9 13 13 C 1.40754 * 119.98634 * 0.02562 * 12 11 10 14 14 C 1.40876 * 120.32992 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99679 * 204.99012 * 14 13 12 16 16 C 1.40062 * 119.99913 * 24.99771 * 14 13 12 17 17 N 1.30776 * 120.00142 * 16.70019 * 16 14 13 18 18 Si 1.86796 * 119.99860 * 196.70831 * 16 14 13 19 19 H 1.48502 * 109.47359 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47322 * 119.99543 * 18 16 14 21 21 H 1.48500 * 109.47075 * 239.99552 * 18 16 14 22 22 C 1.38537 * 119.98235 * 179.97438 * 3 2 1 23 23 Cl 1.73598 * 120.11682 * 359.97438 * 22 3 2 24 24 H 1.08998 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46932 * 300.00111 * 1 2 3 26 26 H 1.09004 * 109.46716 * 60.00050 * 1 2 3 27 27 H 1.08008 * 119.86239 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.88265 * 179.69978 * 5 4 3 29 29 H 1.07992 * 120.02014 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.00508 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.66165 * 180.27080 * 10 9 8 32 32 H 1.08006 * 119.65530 * 179.69187 * 11 10 9 33 33 H 1.08000 * 120.00668 * 180.02562 * 12 11 10 34 34 H 0.97001 * 120.00068 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2898 2.3754 0.0054 5 6 1.9118 3.6109 -0.0009 6 6 3.2886 3.6954 -0.0066 7 6 4.0591 2.5303 -0.0067 8 6 5.5351 2.6166 -0.0135 9 6 6.2117 3.1723 1.0684 10 6 7.5905 3.2435 1.0570 11 6 8.3154 2.7763 -0.0322 12 6 7.6800 2.2316 -1.1097 13 6 6.2756 2.1392 -1.1255 14 6 5.6121 1.5776 -2.2341 15 1 4.5898 1.8527 -2.4476 16 6 6.2781 0.6626 -3.0591 17 7 7.3720 0.0806 -2.6407 18 14 5.6042 0.2736 -4.7573 19 1 4.3648 1.0580 -4.9896 20 1 6.6156 0.6295 -5.7848 21 1 5.2961 -1.1763 -4.8474 22 6 3.4296 1.2833 0.0005 23 17 4.3777 -0.1709 0.0019 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2113 2.3161 0.0099 28 1 1.3174 4.5126 -0.0015 29 1 3.7706 4.6617 -0.0119 30 1 5.6586 3.5435 1.9184 31 1 8.1106 3.6717 1.9011 32 1 9.3933 2.8446 -0.0258 33 1 8.2545 1.8714 -1.9503 34 1 7.8334 -0.5529 -3.2122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241858524.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -15.527486 kcal Electronic energy + Delta-G solvation = -20239.005205 eV Core-core repulsion = 17126.956287 eV Total energy + Delta-G solvation = -3112.048918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02179 -39.53284 -37.94793 -36.88968 -35.49830 -33.08353 -31.41329 -31.16345 -29.59356 -28.02484 -27.04606 -23.84843 -23.36138 -22.53269 -21.35452 -19.21576 -18.70501 -17.27859 -17.13509 -16.97644 -16.63334 -16.32666 -15.62944 -15.29891 -14.95249 -14.67291 -14.39995 -14.10099 -13.76317 -13.42885 -13.08296 -12.93019 -12.81067 -12.67465 -12.50455 -12.19987 -12.13525 -11.96064 -11.90546 -11.48290 -11.40942 -11.14224 -10.92218 -9.65105 -9.22587 -9.04955 -8.98934 -8.56938 -6.21150 0.28397 0.48115 1.03262 1.20211 1.35438 1.47174 1.52343 1.66298 2.20717 2.40796 2.78186 2.84633 3.80286 3.96288 4.06188 4.29998 4.41444 4.44719 4.46132 4.50847 4.63457 4.69548 4.75598 4.86160 5.05133 5.19406 5.24377 5.37958 5.46301 5.50686 5.66504 5.76699 5.82674 6.10344 6.18538 6.27096 6.44210 6.46296 6.75948 7.01257 7.11894 8.36308 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.008472 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.198810 B = 3304.170184 C = 4439.839347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.210 4.210 5 C -0.071 4.071 6 C -0.160 4.160 7 C 0.036 3.964 8 C -0.196 4.196 9 C -0.075 4.075 10 C -0.247 4.247 11 C -0.106 4.106 12 C -0.188 4.188 13 C 0.116 3.884 14 C -0.448 4.448 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.810 5.810 18 Si 0.954 3.046 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.271 1.271 22 C -0.081 4.081 23 Cl -0.069 7.069 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.166 0.834 28 H 0.165 0.835 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 2.992 2.886 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.229 4.229 5 C -0.088 4.088 6 C -0.178 4.178 7 C 0.035 3.965 8 C -0.198 4.198 9 C -0.093 4.093 10 C -0.266 4.266 11 C -0.125 4.125 12 C -0.207 4.207 13 C 0.113 3.887 14 C -0.477 4.477 15 H 0.080 0.920 16 C -0.168 4.168 17 N -0.436 5.436 18 Si 0.777 3.223 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.196 1.196 22 C -0.109 4.109 23 Cl -0.040 7.040 24 H 0.134 0.866 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.183 0.817 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.933 2.471 2.815 12.507 hybrid contribution 0.193 -0.613 -0.782 1.012 sum -11.740 1.858 2.033 12.059 Atomic orbital electron populations 1.23375 0.76220 1.05482 1.02542 1.86137 1.23698 1.26250 1.88681 1.18807 0.89919 0.86223 0.97945 1.21452 1.01075 0.90735 1.09610 1.21249 0.93608 0.98227 0.95750 1.21404 0.94342 0.97162 1.04898 1.18641 0.93202 0.90750 0.93913 1.18664 0.90554 1.13695 0.96841 1.20796 0.94291 0.97845 0.96338 1.20563 0.93795 1.11926 1.00333 1.20721 0.98578 0.98604 0.94585 1.21050 0.95197 1.05087 0.99390 1.17679 0.91760 0.88298 0.90943 1.19372 0.98866 1.21064 1.08402 0.92022 1.26465 0.94295 0.93995 1.02040 1.69853 1.16374 1.20256 1.37092 0.85558 0.79691 0.78680 0.78416 1.18501 1.18516 1.19603 1.20670 0.89114 0.88731 1.12357 1.98336 1.72627 1.36100 1.96897 0.86642 0.90992 0.91537 0.81695 0.81706 0.84814 0.87135 0.86713 0.87673 0.87958 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.96 9.95 -92.78 -0.92 -11.88 16 3 C 0.12 4.19 6.67 22.48 0.15 4.34 16 4 C -0.21 -5.79 9.04 22.43 0.20 -5.59 16 5 C -0.07 -1.91 10.02 22.22 0.22 -1.69 16 6 C -0.16 -5.56 9.74 22.55 0.22 -5.34 16 7 C 0.04 1.54 4.38 -20.04 -0.09 1.46 16 8 C -0.20 -9.44 4.70 -19.61 -0.09 -9.53 16 9 C -0.07 -3.32 9.73 22.46 0.22 -3.10 16 10 C -0.25 -10.83 10.03 22.40 0.22 -10.60 16 11 C -0.11 -5.00 9.96 22.01 0.22 -4.78 16 12 C -0.19 -9.90 8.63 22.46 0.19 -9.70 16 13 C 0.12 6.14 5.08 -21.12 -0.11 6.03 16 14 C -0.45 -23.80 6.71 23.36 0.16 -23.64 16 15 H 0.06 3.35 7.08 -2.91 -0.02 3.33 16 16 C 0.05 2.45 5.16 85.29 0.44 2.89 16 17 N -0.81 -42.33 10.92 21.85 0.24 -42.09 16 18 Si 0.95 39.57 29.59 68.60 2.03 41.60 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 C -0.08 -3.52 5.71 22.69 0.13 -3.39 16 23 Cl -0.07 -3.26 25.72 -2.72 -0.07 -3.33 16 24 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.12 7.64 -2.39 -0.02 1.10 16 26 H 0.07 1.12 7.67 -2.38 -0.02 1.10 16 27 H 0.17 3.13 6.28 -2.91 -0.02 3.11 16 28 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 34 H 0.29 13.61 8.29 -92.71 -0.77 12.85 16 Total: -1.00 -63.38 304.42 5.60 -57.78 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.12 Total: 19.12 kcal Atomic # 6 Polarization: -64.40 SS G_CDS: 3.20 Total: -61.20 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.92 Total: -11.88 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.07 Total: -3.33 kcal Total: -63.38 5.60 -57.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241858524.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -63.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds