Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35839 * 117.00165 * 2 1 4 4 C 1.38561 * 120.11100 * 359.72592 * 3 2 1 5 5 C 1.38295 * 120.04736 * 180.29449 * 4 3 2 6 6 Cl 1.73606 * 119.85977 * 180.02562 * 5 4 3 7 7 C 1.38514 * 120.28157 * 359.96041 * 5 4 3 8 8 C 1.37980 * 120.21868 * 0.03777 * 7 5 4 9 9 C 1.39304 * 119.94980 * 359.97438 * 8 7 5 10 10 C 1.48338 * 120.14155 * 179.97438 * 9 8 7 11 11 C 1.39763 * 120.00642 * 130.01445 * 10 9 8 12 12 C 1.38380 * 120.37135 * 180.02562 * 11 10 9 13 13 C 1.37726 * 120.38857 * 0.02562 * 12 11 10 14 14 C 1.40763 * 119.99292 * 0.02562 * 13 12 11 15 15 C 1.41418 * 120.18737 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00392 * 204.51481 * 15 14 13 17 17 C 1.39938 * 119.99960 * 24.51426 * 15 14 13 18 18 N 1.30831 * 119.99727 * 17.90447 * 17 15 14 19 19 Si 1.86798 * 119.99981 * 197.90394 * 17 15 14 20 20 H 1.48494 * 109.46987 * 90.00065 * 19 17 15 21 21 H 1.48504 * 109.46725 * 210.00058 * 19 17 15 22 22 H 1.48501 * 109.47262 * 330.00061 * 19 17 15 23 23 C 1.38767 * 119.99600 * 309.74689 * 10 9 8 24 24 H 1.08999 * 109.47172 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99484 * 1 2 3 26 26 H 1.09000 * 109.47261 * 59.99731 * 1 2 3 27 27 H 1.07999 * 119.97125 * 0.25534 * 4 3 2 28 28 H 1.07996 * 119.88757 * 180.02562 * 7 5 4 29 29 H 1.08001 * 120.02635 * 179.97438 * 8 7 5 30 30 H 1.07992 * 119.80882 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.80960 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.00477 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99784 * 180.02562 * 18 17 15 34 34 H 1.07991 * 120.18974 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2933 2.3739 -0.0057 5 6 1.9226 3.6053 -0.0119 6 17 0.9752 5.0601 -0.0184 7 6 3.3056 3.6830 -0.0115 8 6 4.0658 2.5316 -0.0058 9 6 3.4417 1.2862 0.0002 10 6 4.2549 0.0456 0.0058 11 6 3.9874 -0.9613 0.9375 12 6 4.7416 -2.1214 0.9498 13 6 5.7646 -2.2970 0.0446 14 6 6.0484 -1.2928 -0.9001 15 6 7.0982 -1.4686 -1.8311 16 1 7.5785 -0.6078 -2.2724 17 6 7.5149 -2.7579 -2.1807 18 7 6.7392 -3.7837 -1.9402 19 14 9.1784 -3.0145 -2.9907 20 1 10.2096 -3.2334 -1.9449 21 1 9.1173 -4.2009 -3.8818 22 1 9.5306 -1.8131 -3.7894 23 6 5.2776 -0.1177 -0.9178 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2148 2.3189 -0.0060 28 1 3.7903 4.6481 -0.0159 29 1 5.1439 2.5958 -0.0059 30 1 3.1882 -0.8327 1.6523 31 1 4.5268 -2.8938 1.6735 32 1 6.3490 -3.2051 0.0594 33 1 7.0281 -4.6775 -2.1821 34 1 5.4839 0.6562 -1.6421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241896819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -8.235563 kcal Electronic energy + Delta-G solvation = -19417.138078 eV Core-core repulsion = 16305.405362 eV Total energy + Delta-G solvation = -3111.732716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05169 -37.60379 -37.24050 -36.13119 -33.75549 -31.57498 -30.18915 -29.77206 -28.08522 -26.96448 -25.23179 -22.76711 -22.12308 -20.49335 -20.20001 -18.12317 -17.16305 -16.12515 -15.61852 -15.56225 -15.26448 -14.68191 -14.54152 -13.77739 -13.68738 -13.42690 -13.05712 -12.91121 -12.41260 -11.93068 -11.90166 -11.68319 -11.56329 -11.23006 -11.01855 -10.94791 -10.90250 -10.80512 -10.52744 -10.42498 -9.66794 -9.43226 -9.13695 -8.71466 -8.12284 -7.46228 -7.08756 -6.73297 -4.34076 1.22910 1.51978 2.15255 2.80558 2.93748 3.08607 3.11981 3.23052 3.47657 3.88308 3.95031 4.63597 4.90941 5.01923 5.16572 5.21149 5.23996 5.47535 5.54245 5.70347 5.79582 5.85701 6.24862 6.30145 6.35923 6.52798 6.59265 6.81417 6.92732 7.07136 7.24195 7.34473 7.49229 7.63215 7.88057 8.03194 8.08270 8.27366 8.63544 8.90490 8.96601 10.21711 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.003943 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.675693 B = 7100.119388 C = 7815.186457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.290 6.290 3 C 0.143 3.857 4 C -0.205 4.205 5 C -0.010 4.010 6 Cl -0.083 7.083 7 C -0.146 4.146 8 C -0.067 4.067 9 C -0.035 4.035 10 C -0.038 4.038 11 C -0.199 4.199 12 C -0.110 4.110 13 C -0.154 4.154 14 C 0.106 3.894 15 C -0.466 4.466 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.201 4.201 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.280 0.720 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 9.083 3.257 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.202 6.202 3 C 0.097 3.903 4 C -0.224 4.224 5 C -0.037 4.037 6 Cl -0.054 7.054 7 C -0.165 4.165 8 C -0.085 4.085 9 C -0.036 4.036 10 C -0.038 4.038 11 C -0.218 4.218 12 C -0.129 4.129 13 C -0.173 4.173 14 C 0.104 3.896 15 C -0.496 4.496 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.220 4.220 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.862 8.750 3.205 12.860 hybrid contribution 0.219 0.037 -0.455 0.506 sum -8.643 8.787 2.750 12.629 Atomic orbital electron populations 1.23076 0.79303 1.03945 1.00863 1.86321 1.20339 1.25617 1.87940 1.18917 0.91574 0.83852 0.95955 1.20911 1.00224 0.90626 1.10682 1.20521 0.91609 0.86460 1.05114 1.98339 1.72932 1.37108 1.97061 1.20841 0.91262 0.99385 1.05019 1.21111 1.00366 0.89866 0.97196 1.18677 0.89469 0.94701 1.00748 1.18075 0.96101 0.91725 0.97895 1.20306 1.03335 0.95358 1.02831 1.20617 0.97223 0.96109 0.98933 1.21416 0.99363 1.01014 0.95558 1.17505 0.90727 0.90514 0.90863 1.19538 1.15457 0.92635 1.21999 0.90479 1.25873 0.97920 0.95714 0.94539 1.69830 1.34725 1.00362 1.37280 0.86339 0.82372 0.78690 0.79464 1.19319 1.20397 1.18657 1.21012 0.98717 1.00760 1.01559 0.88207 0.92962 0.92903 0.84848 0.85122 0.84157 0.89328 0.89286 0.86411 0.90955 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.98 8.84 -19.23 -0.17 -5.15 16 3 C 0.14 2.47 6.59 -38.88 -0.26 2.21 16 4 C -0.20 -2.97 8.81 -39.44 -0.35 -3.32 16 5 C -0.01 -0.15 6.32 -39.46 -0.25 -0.40 16 6 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.51 16 7 C -0.15 -2.06 9.81 -39.57 -0.39 -2.45 16 8 C -0.07 -1.09 9.50 -39.28 -0.37 -1.46 16 9 C -0.04 -0.67 5.48 -104.76 -0.57 -1.24 16 10 C -0.04 -0.85 5.27 -104.98 -0.55 -1.40 16 11 C -0.20 -4.50 8.79 -38.96 -0.34 -4.84 16 12 C -0.11 -2.60 10.01 -39.72 -0.40 -2.99 16 13 C -0.15 -3.99 8.69 -38.82 -0.34 -4.33 16 14 C 0.11 2.81 5.57 -106.87 -0.60 2.21 16 15 C -0.47 -12.30 9.05 -37.74 -0.34 -12.64 16 16 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.80 -20.59 10.96 55.55 0.61 -19.98 16 19 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.20 -4.88 9.25 -38.52 -0.36 -5.23 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 26 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 27 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.14 2.13 8.04 -52.49 -0.42 1.71 16 30 H 0.09 1.86 7.68 -52.49 -0.40 1.46 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.09 2.16 8.04 -52.49 -0.42 1.74 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -28.01 309.72 -9.15 -37.16 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.51 Total: 5.01 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -4.21 Total: -32.78 kcal Atomic # 7 Polarization: -20.59 SS G_CDS: 0.61 Total: -19.98 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.17 Total: -5.15 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.01 -9.15 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241896819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.920 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds