Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35839 * 117.00165 * 2 1 4 4 C 1.38561 * 120.11100 * 359.72592 * 3 2 1 5 5 C 1.38295 * 120.04736 * 180.29449 * 4 3 2 6 6 Cl 1.73606 * 119.85977 * 180.02562 * 5 4 3 7 7 C 1.38514 * 120.28157 * 359.96041 * 5 4 3 8 8 C 1.37980 * 120.21868 * 0.03777 * 7 5 4 9 9 C 1.39304 * 119.94980 * 359.97438 * 8 7 5 10 10 C 1.48338 * 120.14155 * 179.97438 * 9 8 7 11 11 C 1.39763 * 120.00642 * 130.01445 * 10 9 8 12 12 C 1.38380 * 120.37135 * 180.02562 * 11 10 9 13 13 C 1.37726 * 120.38857 * 0.02562 * 12 11 10 14 14 C 1.40763 * 119.99292 * 0.02562 * 13 12 11 15 15 C 1.41418 * 120.18737 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00392 * 204.51481 * 15 14 13 17 17 C 1.39938 * 119.99960 * 24.51426 * 15 14 13 18 18 N 1.30831 * 119.99727 * 17.90447 * 17 15 14 19 19 Si 1.86798 * 119.99981 * 197.90394 * 17 15 14 20 20 H 1.48494 * 109.46987 * 90.00065 * 19 17 15 21 21 H 1.48504 * 109.46725 * 210.00058 * 19 17 15 22 22 H 1.48501 * 109.47262 * 330.00061 * 19 17 15 23 23 C 1.38767 * 119.99600 * 309.74689 * 10 9 8 24 24 H 1.08999 * 109.47172 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99484 * 1 2 3 26 26 H 1.09000 * 109.47261 * 59.99731 * 1 2 3 27 27 H 1.07999 * 119.97125 * 0.25534 * 4 3 2 28 28 H 1.07996 * 119.88757 * 180.02562 * 7 5 4 29 29 H 1.08001 * 120.02635 * 179.97438 * 8 7 5 30 30 H 1.07992 * 119.80882 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.80960 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.00477 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99784 * 180.02562 * 18 17 15 34 34 H 1.07991 * 120.18974 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2933 2.3739 -0.0057 5 6 1.9226 3.6053 -0.0119 6 17 0.9752 5.0601 -0.0184 7 6 3.3056 3.6830 -0.0115 8 6 4.0658 2.5316 -0.0058 9 6 3.4417 1.2862 0.0002 10 6 4.2549 0.0456 0.0058 11 6 3.9874 -0.9613 0.9375 12 6 4.7416 -2.1214 0.9498 13 6 5.7646 -2.2970 0.0446 14 6 6.0484 -1.2928 -0.9001 15 6 7.0982 -1.4686 -1.8311 16 1 7.5785 -0.6078 -2.2724 17 6 7.5149 -2.7579 -2.1807 18 7 6.7392 -3.7837 -1.9402 19 14 9.1784 -3.0145 -2.9907 20 1 10.2096 -3.2334 -1.9449 21 1 9.1173 -4.2009 -3.8818 22 1 9.5306 -1.8131 -3.7894 23 6 5.2776 -0.1177 -0.9178 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2148 2.3189 -0.0060 28 1 3.7903 4.6481 -0.0159 29 1 5.1439 2.5958 -0.0059 30 1 3.1882 -0.8327 1.6523 31 1 4.5268 -2.8938 1.6735 32 1 6.3490 -3.2051 0.0594 33 1 7.0281 -4.6775 -2.1821 34 1 5.4839 0.6562 -1.6421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241896819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -20.983772 kcal Electronic energy + Delta-G solvation = -19417.690882 eV Core-core repulsion = 16305.405362 eV Total energy + Delta-G solvation = -3112.285520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29147 -39.22170 -38.52683 -37.27912 -35.58528 -33.07958 -31.78796 -31.25460 -29.56640 -28.04922 -27.13695 -24.20928 -23.37604 -22.27485 -21.84544 -19.48775 -18.75668 -17.38662 -17.23232 -16.76911 -16.67431 -16.31443 -15.94368 -15.21166 -15.15006 -14.81631 -14.44213 -14.27479 -14.08477 -13.46646 -13.21751 -13.06124 -12.90577 -12.74105 -12.67722 -12.44728 -12.29073 -12.07590 -11.94712 -11.75127 -11.40750 -11.28095 -11.00584 -9.99073 -9.48664 -9.36808 -8.75759 -8.59521 -6.32330 -0.05230 0.33219 1.01610 1.05246 1.14686 1.39463 1.52596 1.54915 2.22732 2.38524 2.57801 2.80207 3.67197 3.81682 3.85317 4.09909 4.13832 4.36123 4.38997 4.48730 4.57597 4.64963 4.72029 4.74159 4.98979 5.04644 5.14557 5.16285 5.23839 5.36631 5.52485 5.64933 5.69863 6.02602 6.09812 6.19406 6.37407 6.44921 6.70684 6.96377 7.04407 8.36679 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.003943 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.675693 B = 7100.119388 C = 7815.186457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.138 3.862 4 C -0.199 4.199 5 C -0.005 4.005 6 Cl -0.058 7.058 7 C -0.142 4.142 8 C -0.067 4.067 9 C -0.078 4.078 10 C -0.026 4.026 11 C -0.202 4.202 12 C -0.112 4.112 13 C -0.184 4.184 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.829 5.829 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.219 4.219 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.287 0.713 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 10.810 3.330 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.092 3.908 4 C -0.218 4.218 5 C -0.032 4.032 6 Cl -0.029 7.029 7 C -0.160 4.160 8 C -0.085 4.085 9 C -0.079 4.079 10 C -0.026 4.026 11 C -0.221 4.221 12 C -0.130 4.130 13 C -0.203 4.203 14 C 0.077 3.923 15 C -0.533 4.533 16 H 0.093 0.907 17 C -0.178 4.178 18 N -0.455 5.455 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.182 1.182 23 C -0.239 4.239 24 H 0.131 0.869 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.102 10.489 3.288 14.929 hybrid contribution 0.370 -0.348 -0.418 0.658 sum -9.732 10.141 2.870 14.345 Atomic orbital electron populations 1.23401 0.76658 1.05506 1.02471 1.86262 1.23235 1.26112 1.88000 1.18965 0.91096 0.84828 0.95931 1.21116 1.01372 0.89781 1.09533 1.20710 0.91956 0.87337 1.03219 1.98356 1.72243 1.35516 1.96819 1.21072 0.91409 0.99671 1.03878 1.21179 1.00772 0.89778 0.96748 1.18642 0.90365 0.94017 1.04839 1.18365 0.95057 0.93039 0.96145 1.20556 1.03392 0.95114 1.03078 1.20881 0.96406 0.97086 0.98620 1.21345 1.00948 1.00857 0.97196 1.17861 0.91505 0.91575 0.91368 1.19799 1.16716 0.93549 1.23208 0.90671 1.26734 1.01422 0.94871 0.94819 1.69891 1.36487 1.00990 1.38110 0.85215 0.77187 0.78823 0.78535 1.18656 1.19341 1.18210 1.21146 0.99727 1.00416 1.02585 0.86889 0.90975 0.91508 0.82266 0.82425 0.84001 0.87640 0.87160 0.88041 0.90233 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -10.74 8.84 -91.74 -0.81 -11.55 16 3 C 0.14 4.57 6.59 22.73 0.15 4.72 16 4 C -0.20 -5.21 8.81 22.36 0.20 -5.01 16 5 C -0.01 -0.14 6.32 22.35 0.14 0.00 16 6 Cl -0.06 -1.20 28.95 -2.72 -0.08 -1.28 16 7 C -0.14 -3.63 9.81 22.27 0.22 -3.41 16 8 C -0.07 -2.10 9.50 22.47 0.21 -1.88 16 9 C -0.08 -2.92 5.48 -19.95 -0.11 -3.03 16 10 C -0.03 -1.18 5.27 -20.09 -0.11 -1.29 16 11 C -0.20 -9.24 8.79 22.67 0.20 -9.04 16 12 C -0.11 -5.38 10.01 22.18 0.22 -5.16 16 13 C -0.18 -9.97 8.69 22.77 0.20 -9.77 16 14 C 0.08 4.38 5.57 -21.32 -0.12 4.26 16 15 C -0.50 -27.70 9.05 23.47 0.21 -27.49 16 16 H 0.08 3.99 7.91 -2.92 -0.02 3.96 16 17 C 0.04 1.85 5.14 85.25 0.44 2.28 16 18 N -0.83 -44.29 10.96 21.83 0.24 -44.05 16 19 Si 0.98 38.81 29.60 68.60 2.03 40.84 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 C -0.22 -11.08 9.25 22.96 0.21 -10.87 16 24 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 26 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 27 H 0.16 3.25 6.30 -2.91 -0.02 3.23 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.14 4.29 8.04 -2.91 -0.02 4.27 16 30 H 0.11 4.40 7.68 -2.91 -0.02 4.37 16 31 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.10 5.72 6.15 -2.91 -0.02 5.70 16 33 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 34 H 0.10 4.65 8.04 -2.92 -0.02 4.62 16 Total: -1.00 -62.55 309.72 5.68 -56.87 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.12 Total: 23.46 kcal Atomic # 6 Polarization: -67.46 SS G_CDS: 3.18 Total: -64.28 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.24 Total: -44.05 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.81 Total: -11.55 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -62.55 5.68 -56.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241896819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.881 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds