Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35864 * 116.99974 * 2 1 4 4 C 1.39467 * 119.78459 * 0.02997 * 3 2 1 5 5 C 1.37947 * 120.61757 * 179.69132 * 4 3 2 6 6 C 1.39161 * 120.16775 * 0.56111 * 5 4 3 7 7 C 1.47844 * 120.22102 * 179.71803 * 6 5 4 8 8 C 1.39697 * 120.14195 * 309.72471 * 7 6 5 9 9 C 1.37902 * 119.87215 * 180.02562 * 8 7 6 10 10 C 1.38397 * 120.16466 * 0.25825 * 9 8 7 11 11 C 1.38495 * 120.29151 * 359.48517 * 10 9 8 12 12 Cl 1.73604 * 119.93600 * 180.28199 * 11 10 9 13 13 C 1.38053 * 120.12683 * 0.51237 * 11 10 9 14 14 C 1.41898 * 119.56189 * 359.44120 * 6 5 4 15 15 C 1.40897 * 120.30179 * 180.29511 * 14 6 5 16 16 H 1.07993 * 119.99843 * 332.97752 * 15 14 6 17 17 C 1.40042 * 119.99651 * 152.97358 * 15 14 6 18 18 N 1.30783 * 120.00460 * 344.44693 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 164.44975 * 17 15 14 20 20 H 1.48507 * 109.47042 * 89.99713 * 19 17 15 21 21 H 1.48504 * 109.47020 * 209.99807 * 19 17 15 22 22 H 1.48494 * 109.46993 * 329.99879 * 19 17 15 23 23 C 1.37939 * 119.77993 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46440 * 299.99347 * 1 2 3 26 26 H 1.08998 * 109.47180 * 59.99657 * 1 2 3 27 27 H 1.08005 * 119.68858 * 359.97398 * 4 3 2 28 28 H 1.08003 * 119.91506 * 180.30028 * 5 4 3 29 29 H 1.07998 * 120.06177 * 0.04165 * 8 7 6 30 30 H 1.08001 * 119.92052 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.85365 * 179.72025 * 10 9 8 32 32 H 1.07999 * 120.08915 * 179.72393 * 13 11 10 33 33 H 0.97002 * 120.00437 * 179.97438 * 18 17 15 34 34 H 1.07998 * 120.09202 * 0.05385 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2819 2.3774 0.0006 5 6 1.8902 3.6154 0.0070 6 6 3.2784 3.7126 0.0012 7 6 3.9316 5.0389 0.0017 8 6 3.5447 6.0117 -0.9232 9 6 4.1581 7.2468 -0.9180 10 6 5.1589 7.5225 -0.0027 11 6 5.5441 6.5649 0.9207 12 17 6.7954 6.9231 2.0695 13 6 4.9382 5.3245 0.9264 14 6 4.0629 2.5302 0.0006 15 6 5.4696 2.6104 0.0010 16 1 5.9614 3.4732 -0.4233 17 6 6.2300 1.5713 0.5516 18 7 5.6614 0.6845 1.3267 19 14 8.0566 1.4518 0.1791 20 1 8.8205 2.2168 1.1972 21 1 8.4764 0.0277 0.2121 22 1 8.3249 2.0159 -1.1681 23 6 3.4236 1.2775 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2039 2.3109 0.0007 28 1 1.2875 4.5117 0.0124 29 1 2.7667 5.7970 -1.6407 30 1 3.8599 7.9994 -1.6330 31 1 5.6390 8.4899 -0.0061 32 1 5.2421 4.5767 1.6439 33 1 6.1880 -0.0355 1.7078 34 1 4.0098 0.3704 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242146753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -11.828825 kcal Electronic energy + Delta-G solvation = -19754.312061 eV Core-core repulsion = 16642.423529 eV Total energy + Delta-G solvation = -3111.888532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.11082 -38.38204 -36.44447 -35.79452 -33.68002 -31.31574 -30.29589 -29.67136 -28.19192 -26.28590 -25.30202 -22.38256 -22.06975 -20.84536 -19.81443 -17.81836 -16.58149 -16.20987 -15.30252 -15.13743 -14.91412 -14.80699 -14.48202 -13.89267 -13.26690 -13.14933 -13.09462 -12.71372 -12.35214 -11.85448 -11.62200 -11.48405 -11.27524 -11.16886 -11.03121 -10.91061 -10.78670 -10.63388 -10.40716 -10.05667 -9.83319 -9.63119 -9.24723 -8.28714 -8.18516 -7.58244 -7.00011 -6.72043 -4.51745 1.67341 1.85400 2.59755 2.70049 2.92788 3.03921 3.07805 3.15612 3.86140 4.23933 4.28319 4.51524 5.31046 5.41988 5.49995 5.61041 5.68958 5.70443 5.84669 5.87338 6.01245 6.05282 6.25255 6.35633 6.52539 6.72930 6.83531 6.85677 6.91710 7.09102 7.23452 7.31805 7.43421 7.60059 7.70807 7.87150 7.95190 8.27401 8.64171 8.72614 8.79987 10.03894 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.006836 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.982459 B = 4095.046046 C = 5801.453784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.317 4.317 5 C -0.036 4.036 6 C -0.213 4.213 7 C 0.038 3.962 8 C -0.130 4.130 9 C -0.113 4.113 10 C -0.142 4.142 11 C -0.035 4.035 12 Cl -0.092 7.092 13 C -0.091 4.091 14 C 0.158 3.842 15 C -0.446 4.446 16 H 0.086 0.914 17 C 0.078 3.922 18 N -0.777 5.777 19 Si 0.903 3.097 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.193 4.193 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.284 0.716 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 5.853 -1.634 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.337 4.337 5 C -0.055 4.055 6 C -0.214 4.214 7 C 0.038 3.962 8 C -0.148 4.148 9 C -0.131 4.131 10 C -0.161 4.161 11 C -0.061 4.061 12 Cl -0.064 7.064 13 C -0.109 4.109 14 C 0.155 3.845 15 C -0.474 4.474 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.400 5.400 19 Si 0.727 3.273 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.212 4.212 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.296 5.479 -1.372 6.097 hybrid contribution 0.634 0.042 0.059 0.638 sum -1.662 5.521 -1.313 5.913 Atomic orbital electron populations 1.22770 0.80676 1.01940 1.00556 1.86009 1.19591 1.29069 1.89671 1.19017 0.92464 0.82520 0.96829 1.20366 0.97415 0.92444 1.23456 1.20320 0.93129 0.95355 0.96665 1.18469 0.92131 0.90830 1.20015 1.18731 0.92800 0.92891 0.91776 1.21403 1.00992 0.93358 0.99090 1.20840 0.96619 0.97020 0.98645 1.20819 0.99783 0.98735 0.96730 1.20832 0.94398 0.96185 0.94692 1.98324 1.52884 1.95000 1.60157 1.21404 0.95771 0.94208 0.99531 1.17200 0.92728 0.88855 0.85712 1.19571 0.90960 1.03852 1.33048 0.89618 1.25963 1.01399 0.94165 0.92725 1.69801 1.38668 1.11145 1.20430 0.86366 0.81881 0.78512 0.80579 1.19061 1.19906 1.18181 1.20530 0.89355 0.99103 1.12260 0.89867 0.93598 0.93660 0.88457 0.88761 0.86176 0.86201 0.86237 0.84194 0.90445 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.06 10.48 -19.31 -0.20 -7.26 16 3 C 0.14 3.19 6.67 -39.23 -0.26 2.92 16 4 C -0.32 -6.82 9.02 -39.23 -0.35 -7.17 16 5 C -0.04 -0.78 9.49 -39.35 -0.37 -1.15 16 6 C -0.21 -4.88 5.53 -104.22 -0.58 -5.45 16 7 C 0.04 0.79 4.92 -104.90 -0.52 0.27 16 8 C -0.13 -2.28 9.52 -39.16 -0.37 -2.66 16 9 C -0.11 -1.72 10.03 -39.65 -0.40 -2.12 16 10 C -0.14 -2.23 9.82 -39.43 -0.39 -2.62 16 11 C -0.03 -0.62 6.31 -39.55 -0.25 -0.87 16 12 Cl -0.09 -1.52 28.95 -51.86 -1.50 -3.02 16 13 C -0.09 -1.84 7.78 -39.13 -0.30 -2.14 16 14 C 0.16 3.98 5.55 -106.58 -0.59 3.39 16 15 C -0.45 -11.10 7.09 -37.90 -0.27 -11.37 16 16 H 0.09 2.11 6.64 -52.49 -0.35 1.76 16 17 C 0.08 1.87 5.17 -17.32 -0.09 1.78 16 18 N -0.78 -19.33 10.99 55.55 0.61 -18.72 16 19 Si 0.90 18.29 29.59 -169.99 -5.03 13.26 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.19 -4.93 8.59 -38.78 -0.33 -5.26 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.10 1.83 6.25 -52.48 -0.33 1.50 16 28 H 0.09 1.77 8.04 -52.48 -0.42 1.34 16 29 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.14 3.09 7.30 -52.49 -0.38 2.71 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.13 3.42 6.26 -52.49 -0.33 3.09 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -26.39 306.99 -9.01 -35.40 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.43 Total: 6.59 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -4.09 Total: -30.89 kcal Atomic # 7 Polarization: -19.33 SS G_CDS: 0.61 Total: -18.72 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.50 Total: -3.02 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.39 -9.01 -35.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242146753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.575 kcal (2) G-P(sol) polarization free energy of solvation -26.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds