Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35864 * 116.99974 * 2 1 4 4 C 1.39467 * 119.78459 * 0.02997 * 3 2 1 5 5 C 1.37947 * 120.61757 * 179.69132 * 4 3 2 6 6 C 1.39161 * 120.16775 * 0.56111 * 5 4 3 7 7 C 1.47844 * 120.22102 * 179.71803 * 6 5 4 8 8 C 1.39697 * 120.14195 * 309.72471 * 7 6 5 9 9 C 1.37902 * 119.87215 * 180.02562 * 8 7 6 10 10 C 1.38397 * 120.16466 * 0.25825 * 9 8 7 11 11 C 1.38495 * 120.29151 * 359.48517 * 10 9 8 12 12 Cl 1.73604 * 119.93600 * 180.28199 * 11 10 9 13 13 C 1.38053 * 120.12683 * 0.51237 * 11 10 9 14 14 C 1.41898 * 119.56189 * 359.44120 * 6 5 4 15 15 C 1.40897 * 120.30179 * 180.29511 * 14 6 5 16 16 H 1.07993 * 119.99843 * 332.97752 * 15 14 6 17 17 C 1.40042 * 119.99651 * 152.97358 * 15 14 6 18 18 N 1.30783 * 120.00460 * 344.44693 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 164.44975 * 17 15 14 20 20 H 1.48507 * 109.47042 * 89.99713 * 19 17 15 21 21 H 1.48504 * 109.47020 * 209.99807 * 19 17 15 22 22 H 1.48494 * 109.46993 * 329.99879 * 19 17 15 23 23 C 1.37939 * 119.77993 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46440 * 299.99347 * 1 2 3 26 26 H 1.08998 * 109.47180 * 59.99657 * 1 2 3 27 27 H 1.08005 * 119.68858 * 359.97398 * 4 3 2 28 28 H 1.08003 * 119.91506 * 180.30028 * 5 4 3 29 29 H 1.07998 * 120.06177 * 0.04165 * 8 7 6 30 30 H 1.08001 * 119.92052 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.85365 * 179.72025 * 10 9 8 32 32 H 1.07999 * 120.08915 * 179.72393 * 13 11 10 33 33 H 0.97002 * 120.00437 * 179.97438 * 18 17 15 34 34 H 1.07998 * 120.09202 * 0.05385 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2819 2.3774 0.0006 5 6 1.8902 3.6154 0.0070 6 6 3.2784 3.7126 0.0012 7 6 3.9316 5.0389 0.0017 8 6 3.5447 6.0117 -0.9232 9 6 4.1581 7.2468 -0.9180 10 6 5.1589 7.5225 -0.0027 11 6 5.5441 6.5649 0.9207 12 17 6.7954 6.9231 2.0695 13 6 4.9382 5.3245 0.9264 14 6 4.0629 2.5302 0.0006 15 6 5.4696 2.6104 0.0010 16 1 5.9614 3.4732 -0.4233 17 6 6.2300 1.5713 0.5516 18 7 5.6614 0.6845 1.3267 19 14 8.0566 1.4518 0.1791 20 1 8.8205 2.2168 1.1972 21 1 8.4764 0.0277 0.2121 22 1 8.3249 2.0159 -1.1681 23 6 3.4236 1.2775 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2039 2.3109 0.0007 28 1 1.2875 4.5117 0.0124 29 1 2.7667 5.7970 -1.6407 30 1 3.8599 7.9994 -1.6330 31 1 5.6390 8.4899 -0.0061 32 1 5.2421 4.5767 1.6439 33 1 6.1880 -0.0355 1.7078 34 1 4.0098 0.3704 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242146753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = -23.693108 kcal Electronic energy + Delta-G solvation = -19754.826535 eV Core-core repulsion = 16642.423529 eV Total energy + Delta-G solvation = -3112.403006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70748 -39.86657 -38.02607 -37.19339 -35.45169 -32.82385 -31.84394 -31.27299 -29.72638 -27.75786 -27.03036 -23.90983 -23.51877 -22.51075 -21.40700 -19.54809 -17.98847 -17.97243 -16.93753 -16.55276 -16.47850 -16.34835 -15.90166 -15.42068 -14.88748 -14.62458 -14.50862 -14.29421 -13.90406 -13.53477 -13.11747 -13.02386 -12.84259 -12.75288 -12.51343 -12.31619 -12.23763 -12.13823 -11.92251 -11.62857 -11.43107 -11.32275 -11.01960 -9.72568 -9.58103 -9.38046 -8.77305 -8.43929 -6.37190 0.25191 0.46218 0.96171 1.16262 1.30386 1.35125 1.45379 1.50476 2.16816 2.67111 2.77591 2.89011 3.67977 4.05479 4.12835 4.30144 4.34759 4.47240 4.49023 4.50806 4.57166 4.66492 4.74975 4.94197 5.04457 5.12614 5.15119 5.29215 5.43691 5.49723 5.53543 5.74285 5.88192 5.92031 6.03290 6.15115 6.17082 6.47513 6.87669 6.90913 7.03037 8.28003 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.006836 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.982459 B = 4095.046046 C = 5801.453784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.130 3.870 4 C -0.314 4.314 5 C -0.040 4.040 6 C -0.218 4.218 7 C 0.009 3.991 8 C -0.128 4.128 9 C -0.099 4.099 10 C -0.130 4.130 11 C -0.043 4.043 12 Cl -0.084 7.084 13 C -0.109 4.109 14 C 0.131 3.869 15 C -0.467 4.467 16 H 0.079 0.921 17 C 0.040 3.960 18 N -0.813 5.813 19 Si 0.964 3.036 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.229 4.229 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.288 0.712 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 8.298 -2.722 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.086 3.914 4 C -0.333 4.333 5 C -0.059 4.059 6 C -0.219 4.219 7 C 0.009 3.991 8 C -0.146 4.146 9 C -0.116 4.116 10 C -0.148 4.148 11 C -0.070 4.070 12 Cl -0.056 7.056 13 C -0.128 4.128 14 C 0.129 3.871 15 C -0.496 4.496 16 H 0.097 0.903 17 C -0.176 4.176 18 N -0.438 5.438 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.249 4.249 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.237 7.922 -2.459 8.904 hybrid contribution 0.763 -0.620 0.396 1.060 sum -2.475 7.302 -2.062 7.981 Atomic orbital electron populations 1.23157 0.77505 1.04555 1.01599 1.85973 1.22894 1.28408 1.89431 1.19131 0.92132 0.83997 0.96155 1.20713 0.98915 0.91703 1.21966 1.20699 0.92875 0.96569 0.95712 1.18822 0.92998 0.91454 1.18633 1.18744 0.93951 0.92799 0.93644 1.21601 1.01260 0.93471 0.98303 1.21303 0.95088 0.96765 0.98489 1.21257 0.99158 0.99251 0.95182 1.20952 0.94588 0.95860 0.95569 1.98322 1.52436 1.94790 1.60010 1.21153 0.97003 0.94832 0.99827 1.17529 0.93447 0.89746 0.86418 1.19621 0.91379 1.04313 1.34285 0.90278 1.26680 1.05190 0.93600 0.92165 1.69872 1.40212 1.12035 1.21717 0.85456 0.77041 0.78796 0.80198 1.18663 1.18981 1.18099 1.20468 0.90645 0.98513 1.15308 0.86689 0.92728 0.92222 0.85284 0.85612 0.84657 0.81737 0.82973 0.87541 0.90093 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.80 113.37 1.11 1.88 16 2 O -0.35 -15.24 10.48 -92.02 -0.96 -16.20 16 3 C 0.13 6.25 6.67 22.50 0.15 6.40 16 4 C -0.31 -13.18 9.02 22.50 0.20 -12.97 16 5 C -0.04 -1.69 9.49 22.42 0.21 -1.48 16 6 C -0.22 -10.15 5.53 -19.61 -0.11 -10.26 16 7 C 0.01 0.37 4.92 -20.05 -0.10 0.27 16 8 C -0.13 -4.17 9.52 22.54 0.21 -3.95 16 9 C -0.10 -2.58 10.03 22.23 0.22 -2.36 16 10 C -0.13 -3.62 9.82 22.37 0.22 -3.40 16 11 C -0.04 -1.49 6.31 22.29 0.14 -1.35 16 12 Cl -0.08 -2.69 28.95 -2.72 -0.08 -2.76 16 13 C -0.11 -4.51 7.78 22.56 0.18 -4.34 16 14 C 0.13 6.97 5.55 -21.13 -0.12 6.85 16 15 C -0.47 -24.61 7.09 23.36 0.17 -24.44 16 16 H 0.08 4.11 6.64 -2.91 -0.02 4.09 16 17 C 0.04 2.04 5.17 85.29 0.44 2.48 16 18 N -0.81 -43.09 10.99 21.84 0.24 -42.85 16 19 Si 0.96 38.99 29.59 68.60 2.03 41.02 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.23 -12.42 8.59 22.79 0.20 -12.22 16 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.05 1.50 7.64 -2.39 -0.02 1.49 16 26 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 27 H 0.13 4.49 6.25 -2.91 -0.02 4.48 16 28 H 0.13 4.38 8.04 -2.91 -0.02 4.35 16 29 H 0.14 3.93 8.05 -2.91 -0.02 3.91 16 30 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.11 5.03 7.30 -2.91 -0.02 5.01 16 33 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 34 H 0.10 5.82 6.26 -2.91 -0.02 5.80 16 Total: -1.00 -61.26 306.99 5.48 -55.78 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.13 Total: 23.91 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 3.13 Total: -58.90 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.24 Total: -42.85 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.96 Total: -16.20 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -0.08 Total: -2.76 kcal Total: -61.26 5.48 -55.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242146753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.088 kcal (2) G-P(sol) polarization free energy of solvation -61.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds