Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35607 * 117.00123 * 2 1 4 4 C 1.39150 * 119.88409 * 0.03291 * 3 2 1 5 5 C 1.36410 * 120.44174 * 179.97438 * 4 3 2 6 6 C 1.40912 * 120.18643 * 359.96578 * 5 4 3 7 7 C 1.41245 * 120.12088 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99530 * 24.50334 * 7 6 5 9 9 C 1.39852 * 120.00319 * 204.50420 * 7 6 5 10 10 N 1.30897 * 120.00181 * 17.84773 * 9 7 6 11 11 Si 1.86801 * 120.00333 * 197.84160 * 9 7 6 12 12 H 1.48508 * 109.46773 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47115 * 119.99702 * 11 9 7 14 14 H 1.48496 * 109.47663 * 240.00434 * 11 9 7 15 15 C 1.40614 * 119.76055 * 359.78399 * 6 5 4 16 16 C 1.38590 * 119.57137 * 0.46880 * 15 6 5 17 17 C 1.48342 * 120.09727 * 179.80115 * 16 15 6 18 18 C 1.39396 * 120.11737 * 129.97524 * 17 16 15 19 19 C 1.37993 * 119.90177 * 180.23472 * 18 17 16 20 20 C 1.38333 * 120.13460 * 359.79101 * 19 18 17 21 21 C 1.38419 * 120.23934 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 119.95224 * 179.97438 * 21 20 19 23 23 C 1.38156 * 120.09572 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47476 * 59.99186 * 1 2 3 25 25 H 1.08999 * 109.47441 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46796 * 299.99606 * 1 2 3 27 27 H 1.07996 * 119.77871 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.90752 * 179.97438 * 5 4 3 29 29 H 0.97002 * 120.00518 * 179.97438 * 10 9 7 30 30 H 1.08006 * 120.21029 * 180.25288 * 15 6 5 31 31 H 1.07996 * 120.05136 * 359.97438 * 18 17 16 32 32 H 1.07991 * 119.93347 * 179.76892 * 19 18 17 33 33 H 1.08000 * 119.87944 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.06789 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2844 2.3737 0.0007 5 6 1.8919 3.5951 0.0012 6 6 3.2980 3.6871 0.0018 7 6 3.9256 4.9525 0.0029 8 1 3.4028 5.8141 0.3913 9 6 5.2237 5.0897 -0.4988 10 7 5.7271 4.1631 -1.2743 11 14 6.2395 6.5955 -0.0626 12 1 5.4476 7.4873 0.8224 13 1 7.4761 6.1714 0.6416 14 1 6.6022 7.3248 -1.3042 15 6 4.0742 2.5146 0.0064 16 6 3.4466 1.2789 0.0005 17 6 4.2541 0.0345 0.0009 18 6 3.9810 -0.9763 0.9211 19 6 4.7380 -2.1300 0.9206 20 6 5.7641 -2.2869 0.0062 21 6 6.0372 -1.2889 -0.9132 22 17 7.3270 -1.4934 -2.0569 23 6 5.2847 -0.1303 -0.9221 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2063 2.3109 0.0016 28 1 1.2935 4.4941 0.0013 29 1 6.6274 4.2584 -1.6227 30 1 5.1524 2.5767 0.0110 31 1 3.1808 -0.8549 1.6361 32 1 4.5293 -2.9118 1.6358 33 1 6.3543 -3.1914 0.0098 34 1 5.4978 0.6478 -1.6400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242147428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = -8.536034 kcal Electronic energy + Delta-G solvation = -19736.645035 eV Core-core repulsion = 16624.899289 eV Total energy + Delta-G solvation = -3111.745746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.33822 -38.22932 -36.42206 -36.04760 -33.45732 -31.94654 -30.31173 -29.16879 -28.31445 -26.89046 -24.70916 -22.76138 -22.13948 -20.66627 -20.06332 -17.56497 -16.94153 -16.25047 -15.40194 -15.27524 -14.95515 -14.76782 -14.47190 -13.86324 -13.32946 -13.14754 -13.08804 -12.62568 -12.59763 -12.08360 -11.69831 -11.38650 -11.26487 -11.14511 -11.06216 -11.00696 -10.80753 -10.68156 -10.53560 -10.08038 -9.87380 -9.50936 -9.10337 -8.62361 -8.33343 -7.47070 -7.07136 -6.76511 -4.32232 1.53569 1.68957 2.45694 2.70868 2.81626 3.07489 3.11580 3.14871 3.92045 4.11197 4.26099 4.55607 5.18842 5.24722 5.51588 5.53206 5.59479 5.65624 5.72966 5.82412 5.87760 6.02271 6.12341 6.28281 6.44049 6.65521 6.73729 6.85020 6.95105 7.03003 7.15202 7.20516 7.35833 7.41672 7.67315 7.89040 8.08893 8.35828 8.54453 8.82505 8.87278 10.16562 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.006729 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.297267 B = 4160.142807 C = 6190.019233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.013 3.987 4 C -0.169 4.169 5 C -0.185 4.185 6 C 0.086 3.914 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.905 3.095 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.275 1.275 15 C -0.113 4.113 16 C -0.071 4.071 17 C 0.010 3.990 18 C -0.095 4.095 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.035 4.035 22 Cl -0.087 7.087 23 C -0.099 4.099 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.281 0.719 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -8.694 2.010 9.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C -0.031 4.031 4 C -0.188 4.188 5 C -0.205 4.205 6 C 0.083 3.917 7 C -0.491 4.491 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.422 5.422 11 Si 0.730 3.270 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.200 1.200 15 C -0.132 4.132 16 C -0.072 4.072 17 C 0.010 3.990 18 C -0.113 4.113 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.061 4.061 22 Cl -0.058 7.058 23 C -0.118 4.118 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.963 -8.940 1.762 9.163 hybrid contribution 0.309 0.874 -0.096 0.932 sum -0.654 -8.066 1.666 8.262 Atomic orbital electron populations 1.22727 0.81037 1.01795 1.00341 1.85870 1.18997 1.28234 1.90883 1.18484 0.90642 0.83129 1.10836 1.20357 0.97486 0.92808 1.08108 1.20652 0.94857 0.95183 1.09822 1.17507 0.90567 0.93335 0.90264 1.19467 0.98419 0.94949 1.36301 0.90392 1.25854 0.97964 0.97749 0.92590 1.69807 1.16280 1.33574 1.22533 0.86302 0.79874 0.81539 0.79281 1.18469 1.19690 1.20026 1.21347 1.00034 0.89151 1.02701 1.17836 0.88786 0.92002 1.08531 1.18821 0.93268 0.93741 0.93198 1.21315 0.98829 0.92758 0.98432 1.20925 0.95735 0.97930 0.98816 1.20884 0.99460 0.98431 0.96082 1.20777 0.93407 0.97084 0.94882 1.98333 1.49755 1.97407 1.60301 1.21304 0.94763 0.96158 0.99538 0.93917 0.89985 0.93909 0.88330 0.88510 0.90816 0.85160 0.85594 0.85802 0.85874 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.80 101.05 0.99 1.53 16 2 O -0.32 -6.28 8.79 -18.52 -0.16 -6.45 16 3 C 0.01 0.28 6.62 -38.44 -0.25 0.02 16 4 C -0.17 -3.63 8.95 -39.90 -0.36 -3.99 16 5 C -0.19 -4.34 9.72 -39.23 -0.38 -4.73 16 6 C 0.09 2.19 5.57 -106.85 -0.60 1.59 16 7 C -0.46 -11.81 9.04 -37.84 -0.34 -12.15 16 8 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 9 C 0.08 1.85 5.13 -17.35 -0.09 1.76 16 10 N -0.80 -19.93 10.97 55.54 0.61 -19.32 16 11 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 12 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 C -0.11 -2.81 8.14 -38.56 -0.31 -3.13 16 16 C -0.07 -1.62 5.48 -104.80 -0.57 -2.19 16 17 C 0.01 0.20 5.27 -104.90 -0.55 -0.35 16 18 C -0.10 -1.67 8.77 -39.24 -0.34 -2.02 16 19 C -0.12 -1.72 10.03 -39.64 -0.40 -2.12 16 20 C -0.13 -1.95 9.82 -39.48 -0.39 -2.34 16 21 C -0.04 -0.60 6.31 -39.54 -0.25 -0.85 16 22 Cl -0.09 -1.34 28.95 -51.86 -1.50 -2.84 16 23 C -0.10 -1.93 9.29 -39.21 -0.36 -2.30 16 24 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 27 H 0.10 1.83 6.26 -52.49 -0.33 1.50 16 28 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.13 3.37 6.15 -52.48 -0.32 3.05 16 31 H 0.13 2.15 7.66 -52.49 -0.40 1.75 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.86 8.04 -52.49 -0.42 2.44 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -26.61 309.51 -9.15 -35.76 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.51 Total: 6.11 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -4.21 Total: -31.25 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.16 Total: -6.45 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.61 -9.15 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242147428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.221 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds